ChromoView - clone / Assembly sequencing status

Gorilla: Chromosome U (TPF updated: 2008-09-03)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH255-522B23
Gorilla_fpcctg3
bGR522B23
EPN details
CU104671.1
finished
2 CH255-127C23
Gorilla_fpcctg3
bGR127C23
EPN details
CU104653.1
finished
3 CH255-37P17
Gorilla_fpcctg3
bGR37P17
EPN details
CU104661.1
finished
4 CH255-179G12
Gorilla_fpcctg3
bGR179G12
EPN details
CT025620.2
finished
5 CH255-451A14
Gorilla_fpcctg3
bGR451A14
EPN details
CU104667.1
finished
6 CH255-405H12
Gorilla_fpcctg3
bGR405H12
EPN details
CU104665.1
finished
7 CH255-259J17
Gorilla_fpcctg3
bGR259J17
EPN details
CU104658.1
finished
8 CH255-39I5
Gorilla_fpcctg3
bGR39I5
EPN details
CU104664.1
finished
9 CH255-83O18
Gorilla_fpcctg3
bGR83O18
EPN details
CU104675.1
finished
10 CH255-289P22
Gorilla_fpcctg3
bGR289P22
EPN details
CU104659.1
finished
11 CH255-201E9
Gorilla_fpcctg3
bGR201E9
EPN details
CU104656.1
finished
12 CH255-478L19
Gorilla_fpcctg3
bGR478L19
EPN details
CU104669.1
finished
13 CH255-48E14
Gorilla_fpcctg3
bGR48E14
EPN details
CU104670.1
finished
14 CH255-386C2
Gorilla_fpcctg3
bGR386C2
EPN details
CU104662.1
finished
15 CH255-375N4
Gorilla_fpcctg3
bGR375N4
EPN details
CU104660.1
finished
16 CH255-13G2
Gorilla_fpcctg3
bGR13G2
EPN details
CU104654.2
finished
17 CH255-415I16
Gorilla_fpcctg3
bGR415I16
EPN details
CU104666.2
finished
18 CH255-559J12
Gorilla_fpcctg3
bGR559J12
EPN details
CU104673.1
finished
19 CH255-397I3
Gorilla_fpcctg3
bGR397I3
EPN details
CU104663.1
finished
20 CH255-469C9
Gorilla_fpcctg3
bGR469C9
EPN details
CU104668.1
finished
21 CH255-56N15
Gorilla_fpcctg3
bGR56N15
EPN details
CU104674.1
finished
22 CH255-114D6
Gorilla_fpcctg3
bGR114D6
EPN details
CU104652.1
finished
23 CH255-58L21
Gorilla_fpcctg3
bGR58L21
EPN details
CU104676.1
finished
24 CH255-351B13
Gorilla_fpcctg3
bGR351B13
EPN details
CT025711.1
finished
25 CH255-354J20
Gorilla_fpcctg3
bGR354J20
EPN details
CT025621.2
finished
26 CH255-336G22
Gorilla_fpcctg3
bGR336G22
EPN details
CT025558.1
finished
27 CH255-191J6
Gorilla_fpcctg3
bGR191J6
EPN details
CU104655.1
finished
28 CH255-206J13
Gorilla_fpcctg3
bGR206J13
EPN details
CU104657.1
finished
29 CH255-529K7
Gorilla_fpcctg3
bGR529K7
EPN details
CU104672.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 191569 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104671.1 1 191569 +
191570 251278 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104653.1 2001 61709 +
251279 457384 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104661.1 2001 208106 +
457385 669784 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CT025620.2 2001 214400 +
669785 809925 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104667.1 2001 142141 +
809926 976250 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104665.1 2001 168325 +
976251 1175238 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104658.1 2001 200988 +
1175239 1400381 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104664.1 2001 227143 +
1400382 1542983 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104675.1 2001 144602 +
1542984 1808208 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104659.1 2001 267225 +
1808209 1986867 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104656.1 2001 180659 +
1986868 2145774 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104669.1 2001 160907 +
2145775 2313229 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104670.1 2001 169455 +
2313230 2426580 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104662.1 65340 178690 +
2426581 2546902 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104660.1 2001 122322 +
2546903 2716139 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104654.2 37061 206297 +
2716140 2906643 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104666.2 1 190504 +
2906644 2973176 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104673.1 103344 169876 +
2973177 3145973 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104663.1 2001 174797 +
3145974 3327978 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104668.1 2001 184005 +
3327979 3562186 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104674.1 1 234208 -
3562187 3752695 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104652.1 32413 222921 +
3752696 3770726 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104676.1 2001 20031 +
3770727 3933022 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CT025711.1 1 162296 -
3933023 4097212 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CT025621.2 29820 194009 +
4097213 4258737 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CT025558.1 2001 163525 +
4258738 4374295 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104655.1 2001 117558 +
4374296 4492257 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104657.1 2001 119962 +
4492258 4642341 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 29 CU104672.1 1 150084 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH255-522B23
Gorilla_fpcctg3
bGR522B23
EPN details
Analysed
30-AUG-06
CU104671.1
finished
191569 Gorilla CHORI-255 BACs 3' / 5'
191569 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
2 CH255-127C23
Gorilla_fpcctg3
bGR127C23
EPN details
Analysed
30-AUG-06
CU104653.1
finished
61709 Gorilla CHORI-255 BACs 3' / 5'
61709 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
3 CH255-37P17
Gorilla_fpcctg3
bGR37P17
EPN details
Analysed
30-AUG-06
CU104661.1
finished
208106 Gorilla CHORI-255 BACs 3' / 5'
208106 / 2001
- / -
2000
0
Identified
2006-09-05
find_overl...
jgrg
 
4 CH255-179G12
Gorilla_fpcctg3
bGR179G12
EPN details
Analysed
30-AUG-06
CT025620.2
finished
214400 Gorilla CHORI-255 BACs 3' / 5'
214400 / 2001
- / -
2000
0
Identified
2006-09-05
find_overl...
jgrg
 
5 CH255-451A14
Gorilla_fpcctg3
bGR451A14
EPN details
Analysed
30-AUG-06
CU104667.1
finished
142141 Gorilla CHORI-255 BACs 3' / 5'
142141 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
6 CH255-405H12
Gorilla_fpcctg3
bGR405H12
EPN details
Analysed
30-AUG-06
CU104665.1
finished
168325 Gorilla CHORI-255 BACs 3' / 5'
168325 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
7 CH255-259J17
Gorilla_fpcctg3
bGR259J17
EPN details
Analysed
30-AUG-06
CU104658.1
finished
200988 Gorilla CHORI-255 BACs 3' / 5'
200988 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
8 CH255-39I5
Gorilla_fpcctg3
bGR39I5
EPN details
Analysed
30-AUG-06
CU104664.1
finished
227143 Gorilla CHORI-255 BACs 3' / 5'
227143 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
9 CH255-83O18
Gorilla_fpcctg3
bGR83O18
EPN details
Analysed
30-AUG-06
CU104675.1
finished
144602 Gorilla CHORI-255 BACs 3' / 5'
144602 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
10 CH255-289P22
Gorilla_fpcctg3
bGR289P22
EPN details
Analysed
30-AUG-06
CU104659.1
finished
267225 Gorilla CHORI-255 BACs 3' / 5'
267225 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
11 CH255-201E9
Gorilla_fpcctg3
bGR201E9
EPN details
Analysed
30-AUG-06
CU104656.1
finished
180659 Gorilla CHORI-255 BACs 3' / 5'
180659 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
12 CH255-478L19
Gorilla_fpcctg3
bGR478L19
EPN details
Analysed
30-AUG-06
CU104669.1
finished
160907 Gorilla CHORI-255 BACs 3' / 5'
160907 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
13 CH255-48E14
Gorilla_fpcctg3
bGR48E14
EPN details
Analysed
30-AUG-06
CU104670.1
finished
169455 Gorilla CHORI-255 BACs 3' / 5'
169455 / 65340
- / -
65339
0
Identified
2006-09-01
find_overl...
jgrg
 
14 CH255-386C2
Gorilla_fpcctg3
bGR386C2
EPN details
Analysed
30-AUG-06
CU104662.1
finished
178690 Gorilla CHORI-255 BACs 3' / 5'
178690 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
15 CH255-375N4
Gorilla_fpcctg3
bGR375N4
EPN details
Analysed
30-AUG-06
CU104660.1
finished
122322 Gorilla CHORI-255 BACs 3' / 5'
122322 / 37061
- / -
37060
0
Identified
2007-02-20
find_overl...
jgrg
 
16 CH255-13G2
Gorilla_fpcctg3
bGR13G2
EPN details
Analysed
16-FEB-07
CU104654.2
finished
231211 Gorilla CHORI-255 BACs 3' / 5'
206297 / 1
- / -
24922
0.44
Identified
2007-02-20
find_overl...
jgrg
 
17 CH255-415I16
Gorilla_fpcctg3
bGR415I16
EPN details
Analysed
14-DEC-06
CU104666.2
finished
190504 Gorilla CHORI-255 BACs 3' / 5'
190504 / 103344
- / -
103353
0.18
Identified
2008-07-04
find_overl...
humpub
 
18 CH255-559J12
Gorilla_fpcctg3
bGR559J12
EPN details
Analysed
30-AUG-06
CU104673.1
finished
169876 Gorilla CHORI-255 BACs 3' / 5'
169876 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
19 CH255-397I3
Gorilla_fpcctg3
bGR397I3
EPN details
Analysed
30-AUG-06
CU104663.1
finished
174797 Gorilla CHORI-255 BACs 3' / 5'
174797 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
20 CH255-469C9
Gorilla_fpcctg3
bGR469C9
EPN details
Analysed
30-AUG-06
CU104668.1
finished
184005 Gorilla CHORI-255 BACs 3' / 3'
184005 / 234208
- / -
2635
0
Identified
2006-09-01
find_overl...
jgrg
 
21 CH255-56N15
Gorilla_fpcctg3
bGR56N15
EPN details
Analysed
30-AUG-06
CU104674.1
finished
236843 Gorilla CHORI-255 BACs 5' / 5'
1 / 32413
- / -
32416
0.04
Identified
2006-09-01
find_overl...
jgrg
 
22 CH255-114D6
Gorilla_fpcctg3
bGR114D6
EPN details
Analysed
30-AUG-06
CU104652.1
finished
222921 Gorilla CHORI-255 BACs 3' / 5'
222921 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
23 CH255-58L21
Gorilla_fpcctg3
bGR58L21
EPN details
Analysed
31-AUG-06
CU104676.1
finished
20031 Gorilla CHORI-255 BACs 3' / 3'
20031 / 162296
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
24 CH255-351B13
Gorilla_fpcctg3
bGR351B13
EPN details
Analysed
31-AUG-05
CT025711.1
finished
164296 Gorilla CHORI-255 BACs 5' / 5'
1 / 29820
- / -
29819
0
Identified
2006-09-05
find_overl...
jgrg
 
25 CH255-354J20
Gorilla_fpcctg3
bGR354J20
EPN details
Analysed
30-AUG-06
CT025621.2
finished
194009 Gorilla CHORI-255 BACs 3' / 5'
194009 / 2001
- / -
2000
0
Identified
2006-09-05
find_overl...
jgrg
 
26 CH255-336G22
Gorilla_fpcctg3
bGR336G22
EPN details
Analysed
04-AUG-05
CT025558.1
finished
163525 Gorilla CHORI-255 BACs 3' / 5'
163525 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
27 CH255-191J6
Gorilla_fpcctg3
bGR191J6
EPN details
Analysed
30-AUG-06
CU104655.1
finished
117558 Gorilla CHORI-255 BACs 3' / 5'
117558 / 2001
- / -
2000
0
Identified
2006-09-01
find_overl...
jgrg
 
28 CH255-206J13
Gorilla_fpcctg3
bGR206J13
EPN details
Analysed
30-AUG-06
CU104657.1
finished
179806 Gorilla CHORI-255 BACs 3' / 5'
119962 / 1
- / -
59958
0.48
Identified
2006-09-01
find_overl...
jgrg
 
29 CH255-529K7
Gorilla_fpcctg3
bGR529K7
EPN details
Analysed
30-AUG-06
CU104672.1
finished
150084 Gorilla CHORI-255 BACs        

Statistics

Clone Summary

Number of gaps
0
Total clones
29
Clone HTGS Phases
finished
29
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
395,502
Total finished length of fin clones w/ overlap
5,037,707
Total finished length of fin clones w/o overlap
4,642,205
Total overlap length of fin+unfin clones
395,502
Total finished length of fin+unfin clones w/ overlap
5,037,707
Total finished length of fin+unfin clones w/o overlap
4,642,205

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Other links

* quick link - http://q.sanger.ac.uk/i53u7c9i