ChromoView - clone / Assembly sequencing status

Wallaby: Chromosome U (TPF updated: 2007-08-15)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 MEKBa-205I8
Wallaby_Uctg192
bME205I8
EPN details
CU467493.1
finished
2 MEKBa-283A6
Wallaby_Uctg192
bME283A6
EPN details
CU458744.1
finished
3 MEKBa-69G12
Wallaby_Uctg192
bME69G12
EPN details
CR855994.1
finished
4 MEKBa-459D3
Wallaby_Uctg192
bME459D3
EPN details
CT008508.1
finished
5 MEKBa-346C2
Wallaby_Uctg192
Cl/Pr bME346C2/CLM1_231M12 swap
EPN details
CR925759.7
finished
6 MEKBa-201B9
Wallaby_Uctg192
bME201B9
EPN details
CR848708.12
finished
7 MEKBa-517H11
Wallaby_Uctg192
bME517H11
EPN details
CU024874.2
finished
8 MEKBa-439O2
Wallaby_Uctg192
bME439O2
EPN details
CU024865.1
finished
9 MEKBa-183M18
Wallaby_Uctg192
bME183M18
EPN details
CU311200.1
finished
10 MEKBa-363O3
Wallaby_Uctg192
bME363O3
EPN details
CU041371.1
finished
11 MEKBa-183I7
Wallaby_Uctg192
bME183I7
EPN details
CU062506.1
finished
12 MEKBa-465N20
Wallaby_Uctg192
bME465N20
EPN details
CT990571.1
finished
  GAP (type-4) length 50000 bps    
14 MEKBa-420A22
Wallaby_Uctg404
bME420A22
EPN details
CU329700.1
finished
  GAP (type-3) length 5000 bps    
16 MEKBa-266M20AB
Wallaby_Uctg404
Cl/Pr bME266M20AB/bME266M20Ab swap
EPN details
CU468516.1
finished
17 MEKBa-585D22
Wallaby_Uctg404
bME585D22
EPN details
CR853300.3
finished
18 MEKBa-43B7
Wallaby_Uctg404
bME43B7
EPN details
CR936538.5
finished
  GAP (type-4) length 50000 bps    
20 MEKBa-403O8
Wallaby_Uctg134
bME403O8
EPN details
CT573039.4
finished
21 MEKBa-593M24
Wallaby_Uctg134
bME593M24
EPN details
CR955038.1
finished
22 MEKBa-509L14
Wallaby_Uctg134
bME509L14
EPN details
CU326409.1
finished
23 MEKBa-61H21
Wallaby_Uctg134
bME61H21
EPN details
CU019600.8
finished
24 MEKBa-35G1
Wallaby_Uctg134
bME35G1
EPN details
CU457771.1
finished
25 MEKBa-601O16
Wallaby_Uctg134
bME601O16
EPN details
CU326345.11
finished
26 MEKBa-538M1
Wallaby_Uctg134
bME538M1
EPN details
CU207325.6
finished
27 MEKBa-230O16
Wallaby_Uctg134
bME230O16
EPN details
CT573038.4
finished
28 MEKBa-248J7
Wallaby_Uctg134
bME248J7
EPN details
CT010589.1
finished
29 MEKBa-452E1
Wallaby_Uctg134
bME452E1
EPN details
CT009770.1
finished
30 MEKBa-583L10
Wallaby_Uctg134
bME583L10
EPN details
CT027995.2
finished
31 MEKBa-325O12
Wallaby_Uctg134
bME325O12
EPN details
CR933563.5
finished
32 MEKBa-460J13
Wallaby_Uctg134
bME460J13
EPN details
CR848714.6
finished
  GAP (type-4) length 50000 bps    
34 MEKBa-176B21
Wallaby_Uctg229
bME176B21
EPN details
CR936543.7
finished
  GAP (type-4) length 50000 bps    
36 MEKBa-454A14
Wallaby_Uctg277
bME454A14
EPN details
CT573040.5
finished
  GAP (type-4) length 50000 bps    
38 MEKBa-107A11
Wallaby_Uctg194
bME107A11
EPN details
CU012066.3
finished
  GAP (type-4) length 50000 bps    
40 MEKBa-426G1
Wallaby_Uctg195
bME426G1
EPN details
CU311201.1
finished
  GAP (type-3) length 50000 bps    
42 MEKBa-207A13
Wallaby_Uctg306
bME207A13
EPN details
CU302288.1
finished
  GAP (type-4) length 50000 bps    
44 MEKBa-522M16
Wallaby_Uctg403
bME522M16
EPN details
CU469286.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 146445 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU467493.1 1 146445 +
146446 222894 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU458744.1 2001 78449 +
222895 395592 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CR855994.1 2001 174698 +
395593 397586 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CT008508.1 2001 3994 +
397587 542343 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CR925759.7 2001 146757 +
542344 734871 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CR848708.12 1997 194524 +
734872 801067 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU024874.2 2001 68196 +
801068 980226 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU024865.1 2001 181159 +
980227 1100864 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU311200.1 2001 122638 +
1100865 1215597 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU041371.1 2001 116733 +
1215598 1350537 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CU062506.1 2001 136940 +
1350538 1528894 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 12 CT990571.1 4019 182375 +
1528895 1578894 13 N 50000 contig no
1578895 1747950 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CU329700.1 1 169056 +
1747951 1752950 15 N 5000 contig no
1752951 1835547 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CU468516.1 1 82597 +
1835548 1999078 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CR853300.3 2001 165531 +
1999079 2113008 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CR936538.5 2001 115930 +
2113009 2163008 19 N 50000 contig no
2163009 2237609 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CT573039.4 1 74601 +
2237610 2414638 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CR955038.1 1 177029 +
2414639 2534858 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CU326409.1 2001 122220 +
2534859 2640174 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CU019600.8 2001 107316 +
2640175 2786917 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CU457771.1 2001 148743 +
2786918 2859704 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CU326345.11 2001 74787 +
2859705 2994610 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CU207325.6 2001 136906 +
2994611 3135245 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CT573038.4 2001 142635 +
3135246 3281834 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CT010589.1 2001 148589 +
3281835 3440764 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CT009770.1 2001 160930 +
3440765 3475887 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CT027995.2 1 35123 +
3475888 3653426 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CR933563.5 1993 179531 +
3653427 3837713 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 32 CR848714.6 2001 186287 +
3837714 3887713 33 N 50000 contig no
3887714 4054004 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 CR936543.7 1 166291 +
4054005 4104004 35 N 50000 contig no
4104005 4268321 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 36 CT573040.5 1 164317 +
4268322 4318321 37 N 50000 contig no
4318322 4478188 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 CU012066.3 1 159867 +
4478189 4528188 39 N 50000 contig no
4528189 4661981 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 CU311201.1 1 133793 +
4661982 4711981 41 N 50000 contig no
4711982 4897340 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 CU302288.1 1 185359 +
4897341 4947340 43 N 50000 contig no
4947341 5107165 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CU469286.1 1 159825 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 MEKBa-205I8
Wallaby_Uctg192
bME205I8
EPN details
Analysed
14-AUG-07
CU467493.1
finished
146445 ME KBa Wallaby Library 3' / 5'
146445 / 2001
- / -
2000
0.05
Identified
2007-08-23
find_overl...
gjc
 
2 MEKBa-283A6
Wallaby_Uctg192
bME283A6
EPN details
Analysed
22-MAR-07
CU458744.1
finished
78449 ME KBa Wallaby Library 3' / 5'
78449 / 2001
- / -
2000
0
Identified
2007-03-27
find_overl...
gjc
 
3 MEKBa-69G12
Wallaby_Uctg192
bME69G12
EPN details
Analysed
21-NOV-04
CR855994.1
finished
174698 ME KBa Wallaby Library 3' / 5'
174698 / 2001
- / -
2000
0
Identified
2005-06-24
find_overl...
badger
 
4 MEKBa-459D3
Wallaby_Uctg192
bME459D3
EPN details
Analysed
25-JUN-05
CT008508.1
finished
3994 ME KBa Wallaby Library 3' / 5'
3994 / 2001
- / -
2000
0.1
Identified
2005-06-24
find_overl...
badger
 
5 MEKBa-346C2
Wallaby_Uctg192
Cl/Pr bME346C2/CLM1_231M12 swap
EPN details
Analysed
18-FEB-05
CR925759.7
finished
146757 ME KBa Wallaby Library 3' / 5'
146757 / 1997
- / -
2000
0.55
Identified
2005-02-18
find_overl...
badger
 
6 MEKBa-201B9
Wallaby_Uctg192
bME201B9
EPN details
Analysed
12-FEB-05
CR848708.12
finished
194524 ME KBa Wallaby Library 3' / 5'
194524 / 2001
- / -
2000
0
Identified
2006-07-26
find_overl...
gjc
 
7 MEKBa-517H11
Wallaby_Uctg192
bME517H11
EPN details
Analysed
25-JUL-06
CU024874.2
finished
68196 ME KBa Wallaby Library 3' / 5'
68196 / 2001
- / -
2000
0
Identified
2006-07-26
find_overl...
gjc
 
8 MEKBa-439O2
Wallaby_Uctg192
bME439O2
EPN details
Analysed
06-JUL-06
CU024865.1
finished
181159 ME KBa Wallaby Library 3' / 5'
181159 / 2001
- / -
2000
0.4
Identified
2006-12-23
find_overl...
badger
 
9 MEKBa-183M18
Wallaby_Uctg192
bME183M18
EPN details
Analysed
21-DEC-06
CU311200.1
finished
122638 ME KBa Wallaby Library 3' / 5'
122638 / 2001
- / -
2000
0
Identified
2006-12-23
find_overl...
badger
 
10 MEKBa-363O3
Wallaby_Uctg192
bME363O3
EPN details
Analysed
21-JUL-06
CU041371.1
finished
116733 ME KBa Wallaby Library 3' / 5'
116733 / 2001
- / -
2000
0.25
Identified
2006-08-05
find_overl...
badger
 
11 MEKBa-183I7
Wallaby_Uctg192
bME183I7
EPN details
Analysed
03-AUG-06
CU062506.1
finished
170000 ME KBa Wallaby Library 3' / 5'
136940 / 4019
33060 / -
4019
1.07
Identified
2006-08-05
find_overl...
badger
 
12 MEKBa-465N20
Wallaby_Uctg192
bME465N20
EPN details
Analysed
03-JUN-06
CT990571.1
finished
182375 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
14 MEKBa-420A22
Wallaby_Uctg404
bME420A22
EPN details
Analysed
23-JAN-07
CU329700.1
finished
169056 ME KBa Wallaby Library        
  GAP (type-3) length 5000 bps                  
16 MEKBa-266M20AB
Wallaby_Uctg404
Cl/Pr bME266M20AB/bME266M20Ab swap
EPN details
Analysed
12-SEP-07
CU468516.1
finished
82597 ME KBa Wallaby Library 3' / 5'
82597 / 2001
- / -
2000
0.1
Identified
2007-09-18
find_overl...
gjc
 
17 MEKBa-585D22
Wallaby_Uctg404
bME585D22
EPN details
Analysed
01-DEC-04
CR853300.3
finished
165531 ME KBa Wallaby Library 3' / 5'
165531 / 2001
- / -
2000
0
Identified
2005-07-01
find_overl...
badger
 
18 MEKBa-43B7
Wallaby_Uctg404
bME43B7
EPN details
Analysed
17-MAY-05
CR936538.5
finished
115930 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
20 MEKBa-403O8
Wallaby_Uctg134
bME403O8
EPN details
Submitted to EMBL
09-FEB-06
CT573039.4
finished
76601 ME KBa Wallaby Library 3' / 5'
74601 / 1
- / -
2001
0.15
Identified
2006-01-14
find_overl...
badger
 
21 MEKBa-593M24
Wallaby_Uctg134
bME593M24
EPN details
Analysed
10-JUN-05
CR955038.1
finished
177029 ME KBa Wallaby Library 3' / 5'
177029 / 2001
- / -
2000
0.05
Identified
2007-01-20
find_overl...
badger
 
22 MEKBa-509L14
Wallaby_Uctg134
bME509L14
EPN details
Analysed
16-JAN-07
CU326409.1
finished
122220 ME KBa Wallaby Library 3' / 5'
122220 / 2001
- / -
2001
0.25
Identified
2007-01-20
find_overl...
badger
 
23 MEKBa-61H21
Wallaby_Uctg134
bME61H21
EPN details
Analysed
04-NOV-06
CU019600.8
finished
107316 ME KBa Wallaby Library 3' / 5'
107316 / 2001
- / -
2000
0
Identified
2007-03-11
find_overl...
badger
 
24 MEKBa-35G1
Wallaby_Uctg134
bME35G1
EPN details
Analysed
08-MAR-07
CU457771.1
finished
148743 ME KBa Wallaby Library 3' / 5'
148743 / 2001
- / -
2001
0.3
Identified
2007-04-25
find_overl...
badger
 
25 MEKBa-601O16
Wallaby_Uctg134
bME601O16
EPN details
Analysed
24-APR-07
CU326345.11
finished
74787 ME KBa Wallaby Library 3' / 5'
74787 / 2001
- / -
2000
0
Identified
2007-04-25
find_overl...
badger
 
26 MEKBa-538M1
Wallaby_Uctg134
bME538M1
EPN details
Analysed
15-DEC-06
CU207325.6
finished
136906 ME KBa Wallaby Library 3' / 5'
136906 / 2001
- / -
2000
0
Identified
2006-12-16
find_overl...
badger
 
27 MEKBa-230O16
Wallaby_Uctg134
bME230O16
EPN details
Submitted to EMBL
09-FEB-06
CT573038.4
finished
142635 ME KBa Wallaby Library 3' / 5'
142635 / 2001
- / -
2000
0
Identified
2006-01-18
find_overl...
badger
 
28 MEKBa-248J7
Wallaby_Uctg134
bME248J7
EPN details
Analysed
30-JUL-05
CT010589.1
finished
148589 ME KBa Wallaby Library 3' / 5'
148589 / 2001
- / -
2001
0.45
Identified
2005-07-29
find_overl...
badger
 
29 MEKBa-452E1
Wallaby_Uctg134
bME452E1
EPN details
Analysed
16-JUL-05
CT009770.1
finished
162867 ME KBa Wallaby Library 3' / 5'
160930 / 1
- / -
2000
4.02
Identified
2005-10-01
find_overl...
badger
 
30 MEKBa-583L10
Wallaby_Uctg134
bME583L10
EPN details
Analysed
01-OCT-05
CT027995.2
finished
35123 ME KBa Wallaby Library 3' / 5'
35123 / 1993
- / -
2000
0.45
Identified
2005-10-01
find_overl...
badger
 
31 MEKBa-325O12
Wallaby_Uctg134
bME325O12
EPN details
Analysed
22-APR-05
CR933563.5
finished
179531 ME KBa Wallaby Library 3' / 5'
179531 / 2001
- / -
2000
0.15
Identified
2005-04-22
find_overl...
badger
 
32 MEKBa-460J13
Wallaby_Uctg134
bME460J13
EPN details
Analysed
15-FEB-05
CR848714.6
finished
186287 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
34 MEKBa-176B21
Wallaby_Uctg229
bME176B21
EPN details
Analysed
14-MAY-05
CR936543.7
finished
166291 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
36 MEKBa-454A14
Wallaby_Uctg277
bME454A14
EPN details
Submitted to EMBL
09-FEB-06
CT573040.5
finished
164317 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
38 MEKBa-107A11
Wallaby_Uctg194
bME107A11
EPN details
Analysed
22-SEP-06
CU012066.3
finished
159867 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
40 MEKBa-426G1
Wallaby_Uctg195
bME426G1
EPN details
Analysed
21-DEC-06
CU311201.1
finished
133793 ME KBa Wallaby Library        
  GAP (type-3) length 50000 bps                  
42 MEKBa-207A13
Wallaby_Uctg306
bME207A13
EPN details
Analysed
04-JAN-07
CU302288.1
finished
185359 ME KBa Wallaby Library        
  GAP (type-4) length 50000 bps                  
44 MEKBa-522M16
Wallaby_Uctg403
bME522M16
EPN details
Analysed
11-OCT-07
CU469286.1
finished
159825 ME KBa Wallaby Library        

Statistics

Clone Summary

Number of gaps
9
Gap types
type-3
2
type-4
7
Total clones
35
Clone HTGS Phases
finished
35
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
52,023
Total finished length of fin clones w/ overlap
4,787,168
Total finished length of fin clones w/o overlap
4,735,145
Total overlap length of fin+unfin clones
52,023
Total finished length of fin+unfin clones w/ overlap
4,787,168
Total finished length of fin+unfin clones w/o overlap
4,735,145

Dovetails

# rank accession status length date
1 11 CU062506.1 unfinished 33,060 Sun, 20 Apr 2014 01:59

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Other links

* quick link - http://q.sanger.ac.uk/txyx1nta