ChromoView - clone / Assembly sequencing status

Mouse: Sub region MHC_BL6 (TPF updated: 2008-04-04)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-304G12
chr17_ctg17003
bM304G12
AC138228.10
finished
2 RP23-451J17
chr17_ctg17003
bM451J17
EPN details
CT033797.5
finished
3 RP23-34A10
chr17_ctg17003
bM34A10
EPN details
CT033755.6
finished
4 RP24-236O3
chr17_ctg17003
bN236O3
EPN details
CT033751.4
finished
5 RP23-14H16
chr17_ctg17003
bM14H16
EPN details
CT485616.11
finished
6 RP24-392I1
chr17_ctg17003
bN392I1
EPN details
CT033759.32
finished
7 RP23-140I12
chr17_ctg17003
bM140I12
EPN details
CT485613.9
finished
8 RP23-144A16
chr17_ctg17003
bM144A16
EPN details
CT033772.6
finished
9 RP24-63E7
chr17_ctg17003
bN63E7
EPN details
CT033756.22
finished
10 RP23-315C20
chr17_ctg17003
bM315C20
EPN details
CT485619.6
finished
11 RP23-353G14
chr17_ctg17003
bM353G14
EPN details
CT030734.24
finished
12 RP24-225N8
chr17_ctg17003
bN225N8
EPN details
CT033847.5
finished
13 RP23-27D5
chr17_ctg17003
bM27D5
EPN details
CT030732.13
finished
14 RP23-222K15
chr17_ctg17003
bM222K15
EPN details
CR974462.5
finished
15 RP23-123G8
chr17_ctg17003
bM123G8
EPN details
CR974422.14
finished
16 RP23-319E15
chr17_ctg17003
bM319E15
EPN details
CR974457.17
finished
17 RP23-24A13
chr17_ctg17003
bM24A13
EPN details
CT009767.6
finished
  GAP (type-2) length unknown    
19 RP24-317H19
chr17_ctg17003
bN317H19
EPN details
CT025759.14
finished
20 RP23-349B4
chr17_ctg17003
bM349B4
AC087117.9
finished
21 RP23-115O3
chr17_ctg17003
Cl/Pr bM115O3/bM97N21 swap
EPN details
CR974444.18
finished
22 RP23-331E12
chr17_ctg17003
bM331E12
EPN details
CR974466.14
finished
23 RP23-38P5
chr17_ctg17003
bM38P5
EPN details
CR974473.23
finished
24 RP23-296D10
chr17_ctg17003
bM296D10
EPN details
CR974483.16
finished
25 RP24-180B11
chr17_ctg17003
bN180B11
EPN details
CR974451.9
finished
26 RP24-443D19
chr17_ctg17003
bN443D19
AC112970.18
finished
27 RP23-108F2
chr17_ctg17003
bM108F2
EPN details
CT030728.6
finished
28 RP24-358N7
chr17_ctg17003
bN358N7
AC129554.13
finished
29 RP24-405C18
chr17_ctg17003
bN405C18
AC120403.8
finished
30 RP24-120D11
chr17_ctg17003
bN120D11
EPN details
CR974472.7
finished
31 RP24-354D8
chr17_ctg17003
bN354D8
AC126245.3
finished
32 RP24-535A1
chr17_ctg17003
bN535A1
AC154819.2
finished
33 RP23-77N9
chr17_ctg17003
Cl/Pr bM77N9/bM282O12 swap
EPN details
CR956641.9
finished
34 RP23-98F21
chr17_ctg17003
bM98F21
AC116130.15
finished
35 RP24-316L14
chr17_ctg17003
bN316L14
EPN details
CR974567.10
finished
36 RP23-39B12
chr17_ctg17003
bM39B12
EPN details
CT033782.5
finished
37 RP24-319N23
chr17_ctg17003
bN319N23
EPN details
CR974427.5
finished
38 RP23-298C24
chr17_ctg17003
bM298C24
EPN details
CR974439.10
finished
39 RP23-373C24
chr17_ctg17003
bM373C24
EPN details
CR974430.11
finished
40 RP23-452G2
chr17_ctg17003
bM452G2
EPN details
CR974447.12
finished
41 RP24-196M16
chr17_ctg17003
bN196M16
AC132598.3
finished
42 RP23-366O3
chr17_ctg17003
bM366O3
AC125529.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 225739 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC138228.10 1 225739 -
225740 337812 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033797.5 65054 177126 +
337813 427251 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033755.6 2001 91439 +
427252 596642 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033751.4 2001 171391 +
596643 757885 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT485616.11 2001 163243 +
757886 918144 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033759.32 2003 162261 +
918145 1078093 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT485613.9 2001 161949 +
1078094 1290960 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033772.6 1 212867 -
1290961 1509146 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033756.22 2001 220186 +
1509147 1553770 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT485619.6 2001 46624 +
1553771 1784634 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT030734.24 2001 232864 +
1784635 1916327 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT033847.5 39472 171164 +
1916328 2125742 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT030732.13 10749 220163 +
2125743 2351799 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CR974462.5 2001 228057 +
2351800 2538848 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CR974422.14 2001 189049 +
2538849 2661487 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CR974457.17 2001 124639 +
2661488 2880929 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 CT009767.6 2001 221442 +
2880930 2930929 18 N 50000 contig yes
2930930 3102611 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CT025759.14 1 171682 +
3102612 3272239 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC087117.9 52272 221899 +
3272240 3413003 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974444.18 49278 190041 +
3413004 3621809 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974466.14 2001 210806 +
3621810 3813217 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974473.23 28064 219471 +
3813218 3936562 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974483.16 2001 125345 +
3936563 4123435 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974451.9 2001 188873 +
4123436 4208906 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC112970.18 1 85471 -
4208907 4413663 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CT030728.6 1 204757 -
4413664 4495270 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC129554.13 100578 182184 +
4495271 4633429 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC120403.8 40277 178435 +
4633430 4767154 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974472.7 58361 192085 +
4767155 4913412 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC126245.3 14183 160440 +
4913413 4977661 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC154819.2 100888 165136 +
4977662 5176955 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR956641.9 1 199294 -
5176956 5313460 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC116130.15 1 136505 -
5313461 5412587 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974567.10 89800 188926 +
5412588 5503702 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CT033782.5 2001 93115 +
5503703 5682097 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974427.5 2001 180395 +
5682098 5863681 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974439.10 1 181584 -
5863682 6011502 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974430.11 51300 199120 +
6011503 6148512 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 CR974447.12 2001 139010 +
6148513 6215260 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC132598.3 96111 162858 +
6215261 6394050 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 42 AC125529.4 36680 215469 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-304G12
chr17_ctg17003
bM304G12
-
-
AC138228.10
finished
225739 RPCI-23 5' / 5'
1 / 65054
- / -
65043
0.02
Identified
2014-04-09
fetch_ncbi...
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2 RP23-451J17
chr17_ctg17003
bM451J17
EPN details
Submitted to EMBL
13-JAN-09
CT033797.5
finished
177126 RPCI-23 3' / 5'
177126 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
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3 RP23-34A10
chr17_ctg17003
bM34A10
EPN details
Submitted to EMBL
13-JAN-09
CT033755.6
finished
91439 RPCI-23 3' / 5'
91439 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
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4 RP24-236O3
chr17_ctg17003
bN236O3
EPN details
Submitted to EMBL
13-JAN-09
CT033751.4
finished
171391 RPCI-24 3' / 5'
171391 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
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5 RP23-14H16
chr17_ctg17003
bM14H16
EPN details
Submitted to EMBL
13-JAN-09
CT485616.11
finished
163243 RPCI-23 3' / 5'
163243 / 2003
- / -
2000
0.1
Identified
2014-04-09
fetch_ncbi...
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6 RP24-392I1
chr17_ctg17003
bN392I1
EPN details
Submitted to EMBL
13-JAN-09
CT033759.32
finished
162261 RPCI-24 3' / 5'
162261 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
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7 RP23-140I12
chr17_ctg17003
bM140I12
EPN details
Submitted to EMBL
13-JAN-09
CT485613.9
finished
161949 RPCI-23 3' / 3'
161949 / 212867
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
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8 RP23-144A16
chr17_ctg17003
bM144A16
EPN details
Submitted to EMBL
13-JAN-09
CT033772.6
finished
214867 RPCI-23 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
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9 RP24-63E7
chr17_ctg17003
bN63E7
EPN details
Submitted to EMBL
13-JAN-09
CT033756.22
finished
220186 RPCI-24 3' / 5'
220186 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
10 RP23-315C20
chr17_ctg17003
bM315C20
EPN details
Submitted to EMBL
13-JAN-09
CT485619.6
finished
46624 RPCI-23 3' / 5'
46624 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
11 RP23-353G14
chr17_ctg17003
bM353G14
EPN details
Submitted to EMBL
13-JAN-09
CT030734.24
finished
232864 RPCI-23 3' / 5'
232864 / 39472
- / -
39471
0.01
Identified
2014-04-09
fetch_ncbi...
humpub
 
12 RP24-225N8
chr17_ctg17003
bN225N8
EPN details
Submitted to EMBL
13-JAN-09
CT033847.5
finished
171164 RPCI-24 3' / 5'
171164 / 10749
- / -
10748
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
13 RP23-27D5
chr17_ctg17003
bM27D5
EPN details
Submitted to EMBL
13-JAN-09
CT030732.13
finished
220163 RPCI-23 3' / 5'
220163 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
14 RP23-222K15
chr17_ctg17003
bM222K15
EPN details
Submitted to EMBL
13-JAN-09
CR974462.5
finished
228057 RPCI-23 3' / 5'
228057 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
15 RP23-123G8
chr17_ctg17003
bM123G8
EPN details
Submitted to EMBL
13-JAN-09
CR974422.14
finished
189049 RPCI-23 3' / 5'
189049 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
16 RP23-319E15
chr17_ctg17003
bM319E15
EPN details
Submitted to EMBL
13-JAN-09
CR974457.17
finished
124639 RPCI-23 3' / 5'
124639 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
17 RP23-24A13
chr17_ctg17003
bM24A13
EPN details
Submitted to EMBL
13-JAN-09
CT009767.6
finished
221442 RPCI-23        
  GAP (type-2) length unknown                  
19 RP24-317H19
chr17_ctg17003
bN317H19
EPN details
Submitted to EMBL
13-JAN-09
CT025759.14
finished
171682 RPCI-24 3' / 5'
171682 / 52272
- / 8
51342
1.79
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate approved
20 RP23-349B4
chr17_ctg17003
bM349B4
-
-
AC087117.9
finished
221899 RPCI-23 3' / 5'
221899 / 49278
- / -
49277
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
21 RP23-115O3
chr17_ctg17003
Cl/Pr bM115O3/bM97N21 swap
EPN details
Submitted to EMBL
13-JAN-09
CR974444.18
finished
190041 RPCI-23 3' / 5'
190041 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
22 RP23-331E12
chr17_ctg17003
bM331E12
EPN details
Submitted to EMBL
13-JAN-09
CR974466.14
finished
210806 RPCI-23 3' / 5'
210806 / 28064
- / -
28025
8.4
Identified
2013-11-07
fetch_ncbi...
humpub
Certificate approved
23 RP23-38P5
chr17_ctg17003
bM38P5
EPN details
Submitted to EMBL
13-JAN-09
CR974473.23
finished
219471 RPCI-23 3' / 5'
219471 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
24 RP23-296D10
chr17_ctg17003
bM296D10
EPN details
Submitted to EMBL
13-JAN-09
CR974483.16
finished
125345 RPCI-23 3' / 5'
125345 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
25 RP24-180B11
chr17_ctg17003
bN180B11
EPN details
Submitted to EMBL
13-JAN-09
CR974451.9
finished
188873 RPCI-24 3' / 3'
188873 / 85471
- / -
87276
0.15
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate approved
26 RP24-443D19
chr17_ctg17003
bN443D19
-
-
AC112970.18
finished
172747 RPCI-24 5' / 3'
1 / 204757
- / -
14256
0.01
Identified
2014-04-09
fetch_ncbi...
humpub
 
27 RP23-108F2
chr17_ctg17003
bM108F2
EPN details
Submitted to EMBL
13-JAN-09
CT030728.6
finished
219013 RPCI-23 5' / 5'
1 / 100578
- / -
100574
0.04
Identified
2014-04-09
fetch_ncbi...
humpub
 
28 RP24-358N7
chr17_ctg17003
bN358N7
-
-
AC129554.13
finished
182184 RPCI-24 3' / 5'
182184 / 40277
- / -
40276
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
29 RP24-405C18
chr17_ctg17003
bN405C18
-
-
AC120403.8
finished
178435 RPCI-24 3' / 5'
178435 / 58361
- / -
58360
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
30 RP24-120D11
chr17_ctg17003
bN120D11
EPN details
Submitted to EMBL
13-JAN-09
CR974472.7
finished
192085 RPCI-24 3' / 5'
192085 / 14183
- / -
14182
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
31 RP24-354D8
chr17_ctg17003
bN354D8
-
-
AC126245.3
finished
160440 RPCI-24 3' / 5'
160440 / 100888
- / -
100885
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
32 RP24-535A1
chr17_ctg17003
bN535A1
-
-
AC154819.2
finished
165136 RPCI-24 3' / 3'
165136 / 199294
- / -
3330
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
33 RP23-77N9
chr17_ctg17003
Cl/Pr bM77N9/bM282O12 swap
EPN details
Submitted to EMBL
13-JAN-09
CR956641.9
finished
202624 RPCI-23 5' / 3'
1 / 136505
- / -
92337
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
34 RP23-98F21
chr17_ctg17003
bM98F21
-
-
AC116130.15
finished
228842 RPCI-23 5' / 5'
1 / 89800
- / -
89793
0.02
Identified
2014-04-09
fetch_ncbi...
humpub
 
35 RP24-316L14
chr17_ctg17003
bN316L14
EPN details
Submitted to EMBL
13-JAN-09
CR974567.10
finished
188926 RPCI-24 3' / 5'
188926 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
36 RP23-39B12
chr17_ctg17003
bM39B12
EPN details
Submitted to EMBL
13-JAN-09
CT033782.5
finished
93115 RPCI-23 3' / 5'
93115 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
37 RP24-319N23
chr17_ctg17003
bN319N23
EPN details
Submitted to EMBL
13-JAN-09
CR974427.5
finished
180395 RPCI-24 3' / 3'
180395 / 181584
- / -
53948
0.01
Identified
2014-04-09
fetch_ncbi...
humpub
 
38 RP23-298C24
chr17_ctg17003
bM298C24
EPN details
Submitted to EMBL
13-JAN-09
CR974439.10
finished
235536 RPCI-23 5' / 5'
1 / 51300
- / -
51299
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
39 RP23-373C24
chr17_ctg17003
bM373C24
EPN details
Submitted to EMBL
13-JAN-09
CR974430.11
finished
199120 RPCI-23 3' / 5'
199120 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
40 RP23-452G2
chr17_ctg17003
bM452G2
EPN details
Submitted to EMBL
13-JAN-09
CR974447.12
finished
139010 RPCI-23 3' / 5'
139010 / 96111
- / -
96107
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
41 RP24-196M16
chr17_ctg17003
bN196M16
-
-
AC132598.3
finished
162858 RPCI-24 3' / 5'
162858 / 36680
- / -
36606
0.2
Identified
2014-04-09
fetch_ncbi...
humpub
 
42 RP23-366O3
chr17_ctg17003
bM366O3
-
-
AC125529.4
finished
215469 RPCI-23        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
41
Clone HTGS Phases
finished
41
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
1,121,135
Total finished length of fin clones w/ overlap
7,466,255
Total finished length of fin clones w/o overlap
6,345,120
Total overlap length of fin+unfin clones
1,121,135
Total finished length of fin+unfin clones w/ overlap
7,466,255
Total finished length of fin+unfin clones w/o overlap
6,345,120

Dovetails

# rank accession status length date
1 20 AC087117.9 unfinished 8 Sat, 19 Apr 2014 00:40

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Other links

* quick link - http://q.sanger.ac.uk/0c0kgov5