ChromoView - clone / Assembly sequencing status

Human: Sub region ems (TPF updated: 2004-10-06)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
Chr_15ctg
AC090602
AC090602.16
finished
2
Chr_15ctg
AC090983
AC090983.13
finished
3
Chr_15ctg
AC124312
AC124312.5
finished
4
Chr_15ctg
AC124303
AC124303.5
finished
5
Chr_15ctg
AC100774
AC100774.2
finished
6
Chr_15ctg
AC124997
AC124997.4
finished
7
Chr_15ctg
AC124305
AC124305.3
finished
8

AC023449
AC023449.11
finished
9
Chr_15ctg
AC109512
AC109512.12
finished
10
Chr_15ctg
AC016266
AC016266.14
finished
11
Chr_15ctg
AC044913
AC044913.7
finished
12
Chr_15ctg
AC100836
AC100836.2
finished
13
Chr_15ctg
AC012060
AC012060.12
finished
14
Chr_15ctg
AC103969
AC103969.4
finished
15
Chr_15ctg
AC009878
AC009878.9
finished
16
Chr_15ctg
AC011196
AC011196.7
finished
17
Chr_15ctg
AC104569
AC104569.7
finished
18
Chr_15ctg
AC135999
AC135999.4
finished
  GAP (type-3) length 44000 bps    
20
Chr_15ctg
AC136992
AC136992.4
finished
21
Chr_15ctg
AC127511
AC127511.7
finished
22
Chr_15ctg
AC136896
AC136896.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 86921 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC090602.16 87787 174707 -
86922 289274 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC090983.13 1 202353 +
289275 461740 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124312.5 1 172466 -
461741 615164 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124303.5 1 153424 -
615165 743026 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC100774.2 55565 183426 +
743027 892123 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124997.4 30714 179810 +
892124 912578 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124305.3 1 20455 -
912579 1082160 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC023449.11 1 169582 -
1082161 1158537 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC109512.12 1 76377 -
1158538 1268633 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC016266.14 1 110096 -
1268634 1383133 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC044913.7 47050 161549 +
1383134 1561601 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC100836.2 13058 191525 +
1561602 1647286 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC012060.12 78495 164179 +
1647287 1718854 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC103969.4 1 71568 -
1718855 1914104 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC009878.9 1 195250 -
1914105 2054383 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC011196.7 3860 144138 +
2054384 2184171 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC104569.7 22214 152001 +
2184172 2231101 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC135999.4 1 46930 -
2231102 2275101 19 N 44000 contig no
2275102 2291066 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC136992.4 1 15965 -
2291067 2490805 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC127511.7 1 199739 -
2490806 2699357 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC136896.6 6395 214946 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
Chr_15ctg
AC090602
-
-
AC090602.16
finished
174707 - 5' / 5'
87787 / 1
- / -
87785
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
2
Chr_15ctg
AC090983
-
-
AC090983.13
finished
203244 - 3' / 3'
202353 / 172466
891 / 8873
305
24.26
Identified
2004-10-06
find_overl...
badger
 
3
Chr_15ctg
AC124312
-
-
AC124312.5
finished
181639 - 5' / 3'
1 / 153424
- / -
7111
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
4
Chr_15ctg
AC124303
-
-
AC124303.5
finished
160535 - 5' / 5'
1 / 55565
- / -
55564
0.02
Identified
2014-10-24
fetch_ncbi...
humpub
 
5
Chr_15ctg
AC100774
-
-
AC100774.2
finished
183426 - 3' / 5'
183426 / 30714
- / -
30698
0.26
Identified
2014-10-24
fetch_ncbi...
humpub
 
6
Chr_15ctg
AC124997
-
-
AC124997.4
finished
179810 - 3' / 3'
179810 / 20455
- / -
7684
0.1
Identified
2014-10-24
fetch_ncbi...
humpub
 
7
Chr_15ctg
AC124305
-
-
AC124305.3
finished
28143 - 5' / 3'
1 / 169582
- / -
5736
0.47
Identified
2014-10-24
fetch_ncbi...
humpub
 
8

AC023449
-
-
AC023449.11
finished
175336 - 5' / 3'
1 / 76377
- / -
113598
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
9
Chr_15ctg
AC109512
-
-
AC109512.12
finished
189975 - 5' / 3'
1 / 110096
- / -
39290
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
10
Chr_15ctg
AC016266
-
-
AC016266.14
finished
149387 - 5' / 5'
1 / 47050
- / -
47049
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
11
Chr_15ctg
AC044913
-
-
AC044913.7
finished
161549 - 3' / 5'
161549 / 13058
- / -
13056
0.13
Identified
2014-10-24
fetch_ncbi...
humpub
 
12
Chr_15ctg
AC100836
-
-
AC100836.2
finished
191525 - 3' / 5'
191525 / 78495
- / -
78443
0.17
Identified
2014-10-24
fetch_ncbi...
humpub
 
13
Chr_15ctg
AC012060
-
-
AC012060.12
finished
164179 - 3' / 3'
164179 / 71568
- / -
49439
0.24
Identified
2014-10-24
fetch_ncbi...
humpub
Certificate rejected
14
Chr_15ctg
AC103969
-
-
AC103969.4
finished
121054 - 5' / 3'
1 / 195250
- / -
3122
0.03
Identified
2014-10-24
fetch_ncbi...
humpub
 
15
Chr_15ctg
AC009878
-
-
AC009878.9
finished
198372 - 5' / 5'
1 / 3860
- / -
3859
0.08
Identified
2014-10-24
fetch_ncbi...
humpub
 
16
Chr_15ctg
AC011196
-
-
AC011196.7
finished
144138 - 3' / 5'
144138 / 22214
- / -
22212
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
17
Chr_15ctg
AC104569
-
-
AC104569.7
finished
152001 - 3' / 3'
152001 / 46930
- / -
54262
1.26
Identified
2014-10-24
fetch_ncbi...
humpub
Certificate approved
18
Chr_15ctg
AC135999
-
-
AC135999.4
finished
101277 -        
  GAP (type-3) length 44000 bps                  
20
Chr_15ctg
AC136992
-
-
AC136992.4
finished
15965 - 5' / 3'
1 / 199739
- / -
2210
0
Identified
2004-05-19
find_overl...
jgrg
 
21
Chr_15ctg
AC127511
-
-
AC127511.7
finished
201949 - 5' / 5'
1 / 6395
- / -
6394
0.05
Identified
2014-10-24
fetch_ncbi...
humpub
 
22
Chr_15ctg
AC136896
-
-
AC136896.6
finished
214946 -        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
21
Clone HTGS Phases
finished
21
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
627,817
Total finished length of fin clones w/ overlap
3,117,821
Total finished length of fin clones w/o overlap
2,490,004
Total overlap length of fin+unfin clones
627,817
Total finished length of fin+unfin clones w/ overlap
3,117,821
Total finished length of fin+unfin clones w/o overlap
2,490,004

Dovetails

# rank accession status length date
1 2 AC090983.13 unfinished 891 Fri, 24 Oct 2014 23:15
2 3 AC124312.5 unfinished 8,873 Fri, 24 Oct 2014 23:15

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