ChromoView - clone / Assembly sequencing status

Human: Sub region ems (TPF updated: 2004-10-06)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1
Chr_15ctg
AC090602
AC090602.16
finished
2
Chr_15ctg
AC090983
AC090983.13
finished
3
Chr_15ctg
AC124312
AC124312.5
finished
4
Chr_15ctg
AC124303
AC124303.5
finished
5
Chr_15ctg
AC100774
AC100774.2
finished
6
Chr_15ctg
AC124997
AC124997.4
finished
7
Chr_15ctg
AC124305
AC124305.3
finished
8

AC023449
AC023449.11
finished
9
Chr_15ctg
AC109512
AC109512.12
finished
10
Chr_15ctg
AC016266
AC016266.14
finished
11
Chr_15ctg
AC044913
AC044913.7
finished
12
Chr_15ctg
AC100836
AC100836.2
finished
13
Chr_15ctg
AC012060
AC012060.12
finished
14
Chr_15ctg
AC103969
AC103969.4
finished
15
Chr_15ctg
AC009878
AC009878.9
finished
16
Chr_15ctg
AC011196
AC011196.7
finished
17
Chr_15ctg
AC104569
AC104569.7
finished
18
Chr_15ctg
AC135999
AC135999.4
finished
  GAP (type-3) length 44000 bps    
20
Chr_15ctg
AC136992
AC136992.4
finished
21
Chr_15ctg
AC127511
AC127511.7
finished
22
Chr_15ctg
AC136896
AC136896.6
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 86921 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC090602.16 87787 174707 -
86922 289274 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC090983.13 1 202353 +
289275 461740 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124312.5 1 172466 -
461741 615164 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124303.5 1 153424 -
615165 743026 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC100774.2 55565 183426 +
743027 892123 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124997.4 30714 179810 +
892124 912578 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC124305.3 1 20455 -
912579 1082160 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC023449.11 1 169582 -
1082161 1158537 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC109512.12 1 76377 -
1158538 1268633 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC016266.14 1 110096 -
1268634 1383133 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC044913.7 47050 161549 +
1383134 1561601 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC100836.2 13058 191525 +
1561602 1647286 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC012060.12 78495 164179 +
1647287 1718854 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC103969.4 1 71568 -
1718855 1914104 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC009878.9 1 195250 -
1914105 2054383 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC011196.7 3860 144138 +
2054384 2184171 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC104569.7 22214 152001 +
2184172 2231101 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 AC135999.4 1 46930 -
2231102 2275101 19 N 44000 contig no
2275102 2291066 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC136992.4 1 15965 -
2291067 2490805 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC127511.7 1 199739 -
2490806 2699357 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 AC136896.6 6395 214946 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
21
Clone HTGS Phases
finished
21
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
627,817
Total finished length of fin clones w/ overlap
3,117,821
Total finished length of fin clones w/o overlap
2,490,004
Total overlap length of fin+unfin clones
627,817
Total finished length of fin+unfin clones w/ overlap
3,117,821
Total finished length of fin+unfin clones w/o overlap
2,490,004

Dovetails

# rank accession status length date
1 2 AC090983.13 unfinished 891 Mon, 29 Jun 2015 23:15
2 3 AC124312.5 unfinished 8,873 Mon, 29 Jun 2015 23:15

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/fe7u2t9e