ChromoView - clone / Assembly sequencing status - Wellcome Trust Sanger Institute

Jump to navigation
Jump to content

AAAA

ChromoView - clone / Assembly sequencing status

Mouse: Sub region blk6_Abpa (TPF updated: 2004-06-17)

TPF
AGP
Details
Statistics

TPF

#	Clone ext/Contig	Clone int	Acc/Fin
1	RP24-164C21 Mus_7ctg7005	Cl/Pr bN164C21/bN67F19 swap EPN details	BX539312.7 finished
2	RP23-412I17 Mus_7ctg7005	bM412I17 EPN details	BX537299.8 finished
3	RP24-216F23 Mus_7ctg7005	bN216F23 EPN details	BX539316.6 finished
4	RP23-475N16 Mus_7ctg7005	bM475N16 EPN details	BX539309.5 finished
5	RP23-389M16 Mus_7ctg7005	bM389M16 EPN details	BX539331.7 finished
6	RP23-349I9 Mus_7ctg7005	bM349I9 EPN details	BX537302.12 finished
7	RP24-67F19 Mus_7ctg7005	Cl/Pr bN67F19/bN164C21 swap EPN details	BX539342.9 finished
8	RP23-454B5	bM454B5 EPN details	BX813307.3 finished
9	RP23-324J22 Mus_7ctg7005	bM324J22 EPN details	BX649462.9 finished

AGP

AGP_S	AGP_E	Rank	Status	Acc.ver	Clone_S	Clone_E	Str
1	123224	1	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX539312.7	1	123224	+
123225	262190	2	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX537299.8	2003	140968	+
262191	438863	3	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX539316.6	2001	178673	+
438864	519003	4	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX539309.5	2001	82140	+
519004	586111	5	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX539331.7	2001	69108	+
586112	798504	6	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX537302.12	2001	214393	+
798505	952256	7	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX539342.9	2001	155752	+
952257	980430	8	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX813307.3	2001	30174	+
980431	1136371	9	FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9	BX649462.9	2001	157941	+

Details

#	Clone ext/Contig	Clone int	Status/Date	Acc/Fin	Length	Library	OL Pos	OL Qual	OL details	Cert
1	RP24-164C21 Mus_7ctg7005	Cl/Pr bN164C21/bN67F19 swap EPN details	Analysed 14-NOV-03	BX539312.7 finished	123224	RPCI-24	3' / 5' 123224 / 2003 - / -	2002 0 Identified	2004-06-17 find_overl... jgrg
2	RP23-412I17 Mus_7ctg7005	bM412I17 EPN details	Submitted to EMBL 13-JAN-09	BX537299.8 finished	140968	RPCI-23	3' / 5' 140968 / 2001 - / -	2000 0 Identified	2014-03-11 fetch_ncbi... humpub
3	RP24-216F23 Mus_7ctg7005	bN216F23 EPN details	Submitted to EMBL 13-JAN-09	BX539316.6 finished	178673	RPCI-24	3' / 5' 178673 / 2001 - / -	2000 0 Identified	2014-03-11 fetch_ncbi... humpub
4	RP23-475N16 Mus_7ctg7005	bM475N16 EPN details	Submitted to EMBL 13-JAN-09	BX539309.5 finished	82140	RPCI-23	3' / 5' 82140 / 2001 - / -	2000 0 Identified	2014-03-11 fetch_ncbi... humpub
5	RP23-389M16 Mus_7ctg7005	bM389M16 EPN details	Submitted to EMBL 13-JAN-09	BX539331.7 finished	69108	RPCI-23	3' / 5' 69108 / 2001 - / -	2000 0 Identified	2014-03-11 fetch_ncbi... humpub
6	RP23-349I9 Mus_7ctg7005	bM349I9 EPN details	Submitted to EMBL 13-JAN-09	BX537302.12 finished	214393	RPCI-23	3' / 5' 214393 / 2001 - / -	2000 0 Identified	2014-03-11 fetch_ncbi... humpub
7	RP24-67F19 Mus_7ctg7005	Cl/Pr bN67F19/bN164C21 swap EPN details	Submitted to EMBL 13-JAN-09	BX539342.9 finished	155752	RPCI-24	3' / 5' 155752 / 2001 - / -	2000 0 Identified	2004-06-17 find_overl... jgrg
8	RP23-454B5	bM454B5 EPN details	Analysed 24-DEC-03	BX813307.3 finished	30174	RPCI-23	3' / 5' 30174 / 2001 - / -	2000 0 Identified	2004-06-17 find_overl... jgrg
9	RP23-324J22 Mus_7ctg7005	bM324J22 EPN details	Submitted to EMBL 13-JAN-09	BX649462.9 finished	157941	RPCI-23

Statistics

Clone Summary

Number of gaps: 0
Total clones: 9
Clone HTGS Phases
finished: 9
Number of clones w/o accession: 0

Overlap Summary

Total overlap length of fin clones: 16,002
Total finished length of fin clones w/ overlap: 1,122,199
Total finished length of fin clones w/o overlap: 1,106,197
Total overlap length of fin+unfin clones: 16,002
Total finished length of fin+unfin clones w/ overlap: 1,122,199
Total finished length of fin+unfin clones w/o overlap: 1,106,197

Search

Select region

Other links

Clones in Multiple TPFs
Problems with ChromoView?
email grc-help@sanger.ac.uk

* quick link - http://q.sanger.ac.uk/lhzt9t1c

Unless otherwise stated the content of this website is copyright Wellcome Trust Sanger Institute, licenced under the Creative Commons Attribution-Noncommercial-No Derivative Works 2.5 Licence.

Wellcome Trust Sanger Institute, Genome Research Limited (reg no. 2742969) is a charity registered in England with number 1021457
Last modified: