ChromoView - clone / Assembly sequencing status
Mouse: Sub region blk6_Abpa (TPF updated: 2004-06-17) TPF
#
Clone ext/Contig
Clone int
Acc/Fin
1
RP24-164C21
Mus_7ctg7005
Cl/Pr bN164C21/bN67F19 swap
EPN details
BX539312.7
finished
2
RP23-412I17
Mus_7ctg7005
bM412I17
EPN details
BX537299.8
finished
3
RP24-216F23
Mus_7ctg7005
bN216F23
EPN details
BX539316.6
finished
4
RP23-475N16
Mus_7ctg7005
bM475N16
EPN details
BX539309.5
finished
5
RP23-389M16
Mus_7ctg7005
bM389M16
EPN details
BX539331.7
finished
6
RP23-349I9
Mus_7ctg7005
bM349I9
EPN details
BX537302.12
finished
7
RP24-67F19
Mus_7ctg7005
Cl/Pr bN67F19/bN164C21 swap
EPN details
BX539342.9
finished
8
RP23-454B5
bM454B5
EPN details
BX813307.3
finished
9
RP23-324J22
Mus_7ctg7005
bM324J22
EPN details
BX649462.9
finished
AGP
Details
#
Clone ext/Contig
Clone int
Status/Date
Acc/Fin
Length
Library
OL Pos
OL Qual
OL details
Cert
1
RP24-164C21
Mus_7ctg7005
bN164C21
-
-
BX539312.7
finished
123224
RPCI-24
3' / 5'
123224 / 2003
- / -
2002
0
Identified
2004-06-17
find_overl...
jgrg
2
RP23-412I17
Mus_7ctg7005
bM412I17
-
-
BX537299.8
finished
140968
RPCI-23
3' / 5'
140968 / 2001
- / -
2000
0
Identified
2016-02-24
fetch_ncbi...
humpub
3
RP24-216F23
Mus_7ctg7005
bN216F23
-
-
BX539316.6
finished
178673
RPCI-24
3' / 5'
178673 / 2001
- / -
2000
0
Identified
2016-02-24
fetch_ncbi...
humpub
4
RP23-475N16
Mus_7ctg7005
bM475N16
-
-
BX539309.5
finished
82140
RPCI-23
3' / 5'
82140 / 2001
- / -
2000
0
Identified
2016-02-24
fetch_ncbi...
humpub
5
RP23-389M16
Mus_7ctg7005
bM389M16
-
-
BX539331.7
finished
69108
RPCI-23
3' / 5'
69108 / 2001
- / -
2000
0
Identified
2016-02-24
fetch_ncbi...
humpub
6
RP23-349I9
Mus_7ctg7005
bM349I9
-
-
BX537302.12
finished
214393
RPCI-23
3' / 5'
214393 / 2001
- / -
2000
0
Identified
2016-02-24
fetch_ncbi...
humpub
7
RP24-67F19
Mus_7ctg7005
bN67F19
-
-
BX539342.9
finished
155752
RPCI-24
3' / 5'
155752 / 2001
- / -
2000
0
Identified
2004-06-17
find_overl...
jgrg
8
RP23-454B5
bM454B5
-
-
BX813307.3
finished
30174
RPCI-23
3' / 5'
30174 / 2001
- / -
2000
0
Identified
2004-06-17
find_overl...
jgrg
9
RP23-324J22
Mus_7ctg7005
bM324J22
-
-
BX649462.9
finished
157941
RPCI-23
Statistics
Clone Summary
- Number of gaps
- 0
- Total clones
- 9
- Clone HTGS Phases
- finished
- 9
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 16,002
- Total finished length of fin clones w/ overlap
- 1,122,199
- Total finished length of fin clones w/o overlap
- 1,106,197
- Total overlap length of fin+unfin clones
- 16,002
- Total finished length of fin+unfin clones w/ overlap
- 1,122,199
- Total finished length of fin+unfin clones w/o overlap
- 1,106,197
TPF
# | Clone ext/Contig | Clone int | Acc/Fin |
---|---|---|---|
1 | RP24-164C21 Mus_7ctg7005 |
Cl/Pr bN164C21/bN67F19 swap EPN details |
BX539312.7 finished |
2 | RP23-412I17 Mus_7ctg7005 |
bM412I17 EPN details |
BX537299.8 finished |
3 | RP24-216F23 Mus_7ctg7005 |
bN216F23 EPN details |
BX539316.6 finished |
4 | RP23-475N16 Mus_7ctg7005 |
bM475N16 EPN details |
BX539309.5 finished |
5 | RP23-389M16 Mus_7ctg7005 |
bM389M16 EPN details |
BX539331.7 finished |
6 | RP23-349I9 Mus_7ctg7005 |
bM349I9 EPN details |
BX537302.12 finished |
7 | RP24-67F19 Mus_7ctg7005 |
Cl/Pr bN67F19/bN164C21 swap EPN details |
BX539342.9 finished |
8 | RP23-454B5 |
bM454B5 EPN details |
BX813307.3 finished |
9 | RP23-324J22 Mus_7ctg7005 |
bM324J22 EPN details |
BX649462.9 finished |
AGP
Details
# | Clone ext/Contig | Clone int | Status/Date | Acc/Fin | Length | Library | OL Pos | OL Qual | OL details | Cert |
---|---|---|---|---|---|---|---|---|---|---|
1 | RP24-164C21 Mus_7ctg7005 |
bN164C21 |
- - |
BX539312.7 finished |
123224 | RPCI-24 | 3' / 5' 123224 / 2003 - / - |
2002 0 Identified |
2004-06-17 find_overl... jgrg |
|
2 | RP23-412I17 Mus_7ctg7005 |
bM412I17 |
- - |
BX537299.8 finished |
140968 | RPCI-23 | 3' / 5' 140968 / 2001 - / - |
2000 0 Identified |
2016-02-24 fetch_ncbi... humpub |
|
3 | RP24-216F23 Mus_7ctg7005 |
bN216F23 |
- - |
BX539316.6 finished |
178673 | RPCI-24 | 3' / 5' 178673 / 2001 - / - |
2000 0 Identified |
2016-02-24 fetch_ncbi... humpub |
|
4 | RP23-475N16 Mus_7ctg7005 |
bM475N16 |
- - |
BX539309.5 finished |
82140 | RPCI-23 | 3' / 5' 82140 / 2001 - / - |
2000 0 Identified |
2016-02-24 fetch_ncbi... humpub |
|
5 | RP23-389M16 Mus_7ctg7005 |
bM389M16 |
- - |
BX539331.7 finished |
69108 | RPCI-23 | 3' / 5' 69108 / 2001 - / - |
2000 0 Identified |
2016-02-24 fetch_ncbi... humpub |
|
6 | RP23-349I9 Mus_7ctg7005 |
bM349I9 |
- - |
BX537302.12 finished |
214393 | RPCI-23 | 3' / 5' 214393 / 2001 - / - |
2000 0 Identified |
2016-02-24 fetch_ncbi... humpub |
|
7 | RP24-67F19 Mus_7ctg7005 |
bN67F19 |
- - |
BX539342.9 finished |
155752 | RPCI-24 | 3' / 5' 155752 / 2001 - / - |
2000 0 Identified |
2004-06-17 find_overl... jgrg |
|
8 | RP23-454B5 |
bM454B5 |
- - |
BX813307.3 finished |
30174 | RPCI-23 | 3' / 5' 30174 / 2001 - / - |
2000 0 Identified |
2004-06-17 find_overl... jgrg |
|
9 | RP23-324J22 Mus_7ctg7005 |
bM324J22 |
- - |
BX649462.9 finished |
157941 | RPCI-23 |
Statistics
Clone Summary
- Number of gaps
- 0
- Total clones
- 9
- Clone HTGS Phases
- finished
- 9
- Number of clones w/o accession
- 0
Overlap Summary
- Total overlap length of fin clones
- 16,002
- Total finished length of fin clones w/ overlap
- 1,122,199
- Total finished length of fin clones w/o overlap
- 1,106,197
- Total overlap length of fin+unfin clones
- 16,002
- Total finished length of fin+unfin clones w/ overlap
- 1,122,199
- Total finished length of fin+unfin clones w/o overlap
- 1,106,197
Search
Select region
Other links
- Clones in Multiple TPFs
- Problems with ChromoView?
email grc-help@sanger.ac.uk