ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD5.1 (TPF updated: 2008-10-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-396O20
chr1_NOD_IDD5.1
bQ396O20
EPN details
AL671997.10
finished
2 DN-378G17
chr1_NOD_IDD5.1
bQ378G17
EPN details
AL672024.9
finished
  GAP (type-2) length unknown    
4 DN-257N2
chr1_NOD_IDD5.1
bQ257N2
EPN details
AL596283.10
finished
5 DN-29B18
chr1_NOD_IDD5.1
bQ29B18
EPN details
AL645951.20
finished
  GAP (type-2) length unknown    
7 DN-276O13
chr1_NOD_IDD5.1
bQ276O13
EPN details
AL645946.6
finished
8 DN-353G8
chr1_NOD_IDD5.1
bQ353G8
EPN details
AL645986.6
finished
  GAP (type-2) length unknown    
10 DN-74E14
chr1_NOD_IDD5.1
bQ74E14
EPN details
AL683801.10
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 69346 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL671997.10 1 69346 +
69347 177519 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL672024.9 2001 110173 +
177520 227519 3 N 50000 contig yes
227520 389662 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL596283.10 1 162143 +
389663 517181 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL645951.20 2001 129519 +
517182 567181 6 N 50000 contig yes
567182 708117 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AL645946.6 1 140936 +
708118 754323 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AL645986.6 2001 48206 +
754324 804323 9 N 50000 contig yes
804324 1003859 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 AL683801.10 1 199536 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-396O20
chr1_NOD_IDD5.1
bQ396O20
EPN details
Submitted to EMBL
12-JAN-09
AL671997.10
finished
69346 DIL NOD 3' / 5'
69346 / 2001
- / -
2000
0
Identified
2014-09-02
fetch_ncbi...
humpub
 
2 DN-378G17
chr1_NOD_IDD5.1
bQ378G17
EPN details
Submitted to EMBL
13-JAN-09
AL672024.9
finished
110173 DIL NOD        
  GAP (type-2) length unknown                  
4 DN-257N2
chr1_NOD_IDD5.1
bQ257N2
EPN details
Submitted to EMBL
13-JAN-09
AL596283.10
finished
162143 DIL NOD 3' / 5'
162143 / 2001
- / -
2000
0
Identified
2014-09-02
fetch_ncbi...
humpub
 
5 DN-29B18
chr1_NOD_IDD5.1
bQ29B18
EPN details
Submitted to EMBL
13-JAN-09
AL645951.20
finished
129519 DIL NOD        
  GAP (type-2) length unknown                  
7 DN-276O13
chr1_NOD_IDD5.1
bQ276O13
EPN details
Submitted to EMBL
13-JAN-09
AL645946.6
finished
140936 DIL NOD 3' / 5'
140936 / 2001
- / -
2000
0
Identified
2014-09-02
fetch_ncbi...
humpub
 
8 DN-353G8
chr1_NOD_IDD5.1
bQ353G8
EPN details
Submitted to EMBL
13-JAN-09
AL645986.6
finished
48206 DIL NOD        
  GAP (type-2) length unknown                  
10 DN-74E14
chr1_NOD_IDD5.1
bQ74E14
EPN details
Submitted to EMBL
13-JAN-09
AL683801.10
finished
199536 DIL NOD        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-2
3
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
6,000
Total finished length of fin clones w/ overlap
859,859
Total finished length of fin clones w/o overlap
853,859
Total overlap length of fin+unfin clones
6,000
Total finished length of fin+unfin clones w/ overlap
859,859
Total finished length of fin+unfin clones w/o overlap
853,859

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Other links

* quick link - http://q.sanger.ac.uk/l892ldg0