ChromoView - clone / Assembly sequencing status

Mouse: Sub region bk6_IDD5.1 (TPF updated: 2004-06-14)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-17F2
chr1_blk6_IDD5
bM17F2
EPN details
AL683804.15
finished
2 RP23-157N11
chr1_blk6_IDD5
bM157N11
EPN details
AL646054.20
finished
3 RP23-146J17
chr1_blk6_IDD5
bM146J17
EPN details
AL663047.15
finished
4 RP23-148E7
chr1_blk6_IDD5
bM148E7
EPN details
AL645744.16
finished
5 RP23-163J17
chr1_blk6_IDD5
bM163J17
EPN details
AL645702.14
finished
6 RP23-429E18
chr1_blk6_IDD5
bM429E18
EPN details
AL645696.30
finished
7 RP23-280M7
chr1_blk6_IDD5
bM280M7
EPN details
AL645584.28
finished
8 RP23-255M18

bM255M18
EPN details
AL807812.6
finished
9 RP23-327M13
chr1_blk6_IDD5
bM327M13
EPN details
AL645544.16
finished
10 RP23-15E24
chr1_blk6_IDD5
bM15E24
EPN details
AL645938.9
finished
11 RP23-361M22
chr1_blk6_IDD5
bM361M22
EPN details
AL662815.13
finished
12 RP23-26A10
chr1_blk6_IDD5
bM26A10
EPN details
AC101661.7
finished
13 RP23-98M4
chr1_blk6_IDD5
bM98M4
EPN details
AL662920.14
finished
14 RP23-20G7
chr1_blk6_IDD5
bM20G7
EPN details
AL645727.16
finished
15 RP23-149A5
chr1_blk6_IDD5
bM149A5
EPN details
AL671560.7
finished
16 RP23-142E14
chr1_blk6_IDD5
bM142E14
EPN details
AL732549.16
finished
17 RP23-198I4
chr1_blk6_IDD5
bM198I4
EPN details
AL645685.12
finished
18 RP23-13C17
chr1_blk6_IDD5
bM13C17
EPN details
AL645950.13
finished
19 RP23-434D24
chr1_blk6_IDD5
bM434D24
EPN details
AL669947.14
finished
20 RP23-388B5
chr1_blk6_IDD5
bM388B5
EPN details
AL645637.18
finished
21 RP23-341P11
chr1_blk6_IDD5
bM341P11
EPN details
AL645534.20
finished
22 RP23-132J5
chr1_blk6_IDD5
bM132J5
EPN details
AL732462.20
finished
23 RP23-374K2
chr1_blk6_IDD5
bM374K2
EPN details
AL645606.22
finished
24 RP23-23D16
chr1_blk6_IDD5
bM23D16
EPN details
AL645646.8
finished
25 RP23-45M23
chr1_blk6_IDD5
bM45M23
EPN details
AL645726.22
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 198631 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL683804.15 1 198631 +
198632 398936 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL646054.20 2001 202305 +
398937 474589 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL663047.15 2001 77653 +
474590 580604 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645744.16 2001 108015 +
580605 783707 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645702.14 2001 205103 +
783708 941106 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645696.30 2001 159399 +
941107 1120758 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645584.28 2001 181652 +
1120759 1146309 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL807812.6 2001 27551 +
1146310 1360355 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645544.16 2001 216046 +
1360356 1497206 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645938.9 2001 138851 +
1497207 1650410 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL662815.13 2001 155204 +
1650411 1877343 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AC101661.7 2001 228933 +
1877344 2021925 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL662920.14 2001 146582 +
2021926 2238352 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645727.16 2001 218427 +
2238353 2394339 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL671560.7 2001 157987 +
2394340 2399615 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL732549.16 2001 7276 +
2399616 2616565 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645685.12 2001 218950 +
2616566 2753129 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645950.13 2001 138564 +
2753130 2853433 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL669947.14 2001 102304 +
2853434 3059063 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645637.18 2000 207629 +
3059064 3221230 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645534.20 2001 164167 +
3221231 3310586 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL732462.20 2001 91356 +
3310587 3502044 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645606.22 2001 193458 +
3502045 3578482 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645646.8 2001 78438 +
3578483 3807829 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 25 AL645726.22 2001 231347 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-17F2
chr1_blk6_IDD5
bM17F2
EPN details
Submitted to EMBL
13-JAN-09
AL683804.15
finished
198631 RPCI-23 3' / 5'
198631 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
2 RP23-157N11
chr1_blk6_IDD5
bM157N11
EPN details
Submitted to EMBL
13-JAN-09
AL646054.20
finished
202305 RPCI-23 3' / 5'
202305 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
3 RP23-146J17
chr1_blk6_IDD5
bM146J17
EPN details
Submitted to EMBL
13-JAN-09
AL663047.15
finished
77653 RPCI-23 3' / 5'
77653 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
4 RP23-148E7
chr1_blk6_IDD5
bM148E7
EPN details
Submitted to EMBL
13-JAN-09
AL645744.16
finished
108015 RPCI-23 3' / 5'
108015 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
5 RP23-163J17
chr1_blk6_IDD5
bM163J17
EPN details
Submitted to EMBL
13-JAN-09
AL645702.14
finished
205103 RPCI-23 3' / 5'
205103 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
6 RP23-429E18
chr1_blk6_IDD5
bM429E18
EPN details
Submitted to EMBL
13-JAN-09
AL645696.30
finished
159399 RPCI-23 3' / 5'
159399 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
7 RP23-280M7
chr1_blk6_IDD5
bM280M7
EPN details
Analysed
11-OCT-07
AL645584.28
finished
181652 RPCI-23 3' / 5'
181652 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
8 RP23-255M18

bM255M18
EPN details
Submitted to EMBL
13-JAN-09
AL807812.6
finished
27551 RPCI-23 3' / 5'
27551 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
9 RP23-327M13
chr1_blk6_IDD5
bM327M13
EPN details
Submitted to EMBL
13-JAN-09
AL645544.16
finished
216046 RPCI-23 3' / 5'
216046 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
10 RP23-15E24
chr1_blk6_IDD5
bM15E24
EPN details
Submitted to EMBL
13-JAN-09
AL645938.9
finished
138851 RPCI-23 3' / 5'
138851 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
11 RP23-361M22
chr1_blk6_IDD5
bM361M22
EPN details
Submitted to EMBL
13-JAN-09
AL662815.13
finished
155204 RPCI-23 3' / 5'
155204 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
12 RP23-26A10
chr1_blk6_IDD5
bM26A10
EPN details
Submitted to EMBL
07-FEB-05
AC101661.7
finished
228933 RPCI-23 3' / 5'
228933 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
13 RP23-98M4
chr1_blk6_IDD5
bM98M4
EPN details
Submitted to EMBL
13-JAN-09
AL662920.14
finished
146582 RPCI-23 3' / 5'
146582 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
14 RP23-20G7
chr1_blk6_IDD5
bM20G7
EPN details
Submitted to EMBL
13-JAN-09
AL645727.16
finished
218427 RPCI-23 3' / 5'
218427 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
15 RP23-149A5
chr1_blk6_IDD5
bM149A5
EPN details
Submitted to EMBL
13-JAN-09
AL671560.7
finished
157987 RPCI-23 3' / 5'
157987 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
16 RP23-142E14
chr1_blk6_IDD5
bM142E14
EPN details
Submitted to EMBL
13-JAN-09
AL732549.16
finished
7276 RPCI-23 3' / 5'
7276 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
17 RP23-198I4
chr1_blk6_IDD5
bM198I4
EPN details
Submitted to EMBL
13-JAN-09
AL645685.12
finished
218950 RPCI-23 3' / 5'
218950 / 2001
- / -
2000
0.05
Commented
2014-07-30
fetch_ncbi...
humpub
 
18 RP23-13C17
chr1_blk6_IDD5
bM13C17
EPN details
Submitted to EMBL
13-JAN-09
AL645950.13
finished
138564 RPCI-23 3' / 5'
138564 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
19 RP23-434D24
chr1_blk6_IDD5
bM434D24
EPN details
Submitted to EMBL
13-JAN-09
AL669947.14
finished
102304 RPCI-23 3' / 5'
102304 / 2000
- / -
1999
0.05
Commented
2014-07-30
fetch_ncbi...
humpub
 
20 RP23-388B5
chr1_blk6_IDD5
bM388B5
EPN details
Submitted to EMBL
13-JAN-09
AL645637.18
finished
207629 RPCI-23 3' / 5'
207629 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
21 RP23-341P11
chr1_blk6_IDD5
bM341P11
EPN details
Submitted to EMBL
13-JAN-09
AL645534.20
finished
164167 RPCI-23 3' / 5'
164167 / 2001
- / -
2000
0
Identified
2004-06-14
find_overl...
badger
 
22 RP23-132J5
chr1_blk6_IDD5
bM132J5
EPN details
Submitted to EMBL
07-FEB-05
AL732462.20
finished
91356 RPCI-23 3' / 5'
91356 / 2001
- / -
2000
0.25
Commented
2004-06-15
edit_overl...
ko1
 
23 RP23-374K2
chr1_blk6_IDD5
bM374K2
EPN details
Submitted to EMBL
13-JAN-09
AL645606.22
finished
193458 RPCI-23 3' / 5'
193458 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
24 RP23-23D16
chr1_blk6_IDD5
bM23D16
EPN details
Submitted to EMBL
13-JAN-09
AL645646.8
finished
78438 RPCI-23 3' / 5'
78438 / 2001
- / -
2000
0
Identified
2014-07-30
fetch_ncbi...
humpub
 
25 RP23-45M23
chr1_blk6_IDD5
bM45M23
EPN details
Submitted to EMBL
13-JAN-09
AL645726.22
finished
231347 RPCI-23        

Statistics

Clone Summary

Number of gaps
0
Total clones
25
Clone HTGS Phases
finished
25
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
47,999
Total finished length of fin clones w/ overlap
3,828,277
Total finished length of fin clones w/o overlap
3,780,278
Total overlap length of fin+unfin clones
47,999
Total finished length of fin+unfin clones w/ overlap
3,828,277
Total finished length of fin+unfin clones w/o overlap
3,780,278

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Other links

* quick link - http://q.sanger.ac.uk/l01a0xcl