ChromoView - clone / Assembly sequencing status

Mouse: Sub region 129_IDD3 (TPF updated: 2005-07-07)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CT7-316H20
chr3_129_IDD3
bP316H20
EPN details
AL645806.9
finished
2 CT7-315N12
chr3_129_IDD3
bP315N12
EPN details
AL645753.11
finished
  GAP (type-3) length unknown    
4 CT7-314H19
chr3_129_IDD3
bP314H19
EPN details
AL663106.18
finished
  GAP (type-3) length unknown    
6 CT7-337H6
chr3_129_IDD3
bP337H6
EPN details
AL645807.4
finished
7 CT7-139P23
chr3_129_IDD3
bP139P23
EPN details
AL662862.16
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 129775 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645806.9 1 129775 +
129776 273369 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645753.11 2001 145594 +
273370 323369 3 N 50000 contig no
323370 500592 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL663106.18 1 177223 +
500593 550592 5 N 50000 contig no
550593 752092 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL645807.4 1 201500 +
752093 870900 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL662862.16 2001 120808 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CT7-316H20
chr3_129_IDD3
bP316H20
EPN details
Submitted to EMBL
13-JAN-09
AL645806.9
finished
129775 CITB-CJ7-B 3' / 5'
129775 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
2 CT7-315N12
chr3_129_IDD3
bP315N12
EPN details
Submitted to EMBL
13-JAN-09
AL645753.11
finished
145594 CITB-CJ7-B        
  GAP (type-3) length unknown                  
4 CT7-314H19
chr3_129_IDD3
bP314H19
EPN details
Submitted to EMBL
13-JAN-09
AL663106.18
finished
177223 CITB-CJ7-B        
  GAP (type-3) length unknown                  
6 CT7-337H6
chr3_129_IDD3
bP337H6
EPN details
Submitted to EMBL
13-JAN-09
AL645807.4
finished
201500 CITB-CJ7-B 3' / 5'
201500 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
7 CT7-139P23
chr3_129_IDD3
bP139P23
EPN details
Submitted to EMBL
13-JAN-09
AL662862.16
finished
120808 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
774,900
Total finished length of fin clones w/o overlap
770,900
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
774,900
Total finished length of fin+unfin clones w/o overlap
770,900

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Other links

* quick link - http://q.sanger.ac.uk/26djs7s0