ChromoView - clone / Assembly sequencing status

Mouse: Sub region blk6_IDD18 (TPF updated: 2004-06-14)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-214E3
chr3_NOD_IDD18
bM214E3
EPN details
AL671877.15
finished
2 RP23-89M15
chr3_NOD_IDD18
bM89M15
EPN details
AL671854.14
finished
3 RP23-27B23
chr3_NOD_IDD18
bM27B23
EPN details
AL671899.11
finished
4 RP23-37G19
chr3_NOD_IDD18
bM37G19
EPN details
AL672200.10
finished
5 RP23-128G10
chr3_NOD_IDD18
bM128G10
EPN details
AL683823.11
finished
6 RP23-217I18
chr3_NOD_IDD18
bM217I18
EPN details
AL671917.8
finished
7 RP23-316M11
chr3_NOD_IDD18
bM316M11
EPN details
AL671894.20
finished
8 RP23-288B16

bM288B16
EPN details
AL671921.16
finished
9 RP23-64M1
chr3_NOD_IDD18
bM64M1
EPN details
AL845310.4
finished
10 RP23-176A21
chr3_NOD_IDD18
bM176A21
EPN details
AL671857.16
finished
11 RP23-130L10
chr3_NOD_IDD18
bM130L10
EPN details
AL731716.10
finished
12 RP23-246L17
chr3_NOD_IDD18
bM246L17
EPN details
AL671987.12
finished
13 RP23-90O18
chr3_NOD_IDD18
bM90O18
EPN details
AL683824.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 146015 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671877.15 1 146015 +
146016 351280 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671854.14 2001 207265 +
351281 482055 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671899.11 2001 132775 +
482056 569184 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL672200.10 2001 89129 +
569185 747667 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL683823.11 2001 180483 +
747668 918493 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671917.8 2001 172826 +
918494 1110702 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671894.20 2001 194209 +
1110703 1232146 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671921.16 2001 123444 +
1232147 1352502 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL845310.4 2001 122356 +
1352503 1557856 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671857.16 2001 207354 +
1557857 1604961 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL731716.10 2001 49105 +
1604962 1786294 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL671987.12 2001 183333 +
1786295 2017883 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 AL683824.8 2001 233589 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-214E3
chr3_NOD_IDD18
bM214E3
EPN details
Submitted to EMBL
13-JAN-09
AL671877.15
finished
146015 RPCI-23 3' / 5'
146015 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
2 RP23-89M15
chr3_NOD_IDD18
bM89M15
EPN details
Submitted to EMBL
13-JAN-09
AL671854.14
finished
207265 RPCI-23 3' / 5'
207265 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
3 RP23-27B23
chr3_NOD_IDD18
bM27B23
EPN details
Submitted to EMBL
13-JAN-09
AL671899.11
finished
132775 RPCI-23 3' / 5'
132775 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
4 RP23-37G19
chr3_NOD_IDD18
bM37G19
EPN details
Submitted to EMBL
13-JAN-09
AL672200.10
finished
89129 RPCI-23 3' / 5'
89129 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
5 RP23-128G10
chr3_NOD_IDD18
bM128G10
EPN details
Submitted to EMBL
13-JAN-09
AL683823.11
finished
180483 RPCI-23 3' / 5'
180483 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
6 RP23-217I18
chr3_NOD_IDD18
bM217I18
EPN details
Submitted to EMBL
13-JAN-09
AL671917.8
finished
172826 RPCI-23 3' / 5'
172826 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
7 RP23-316M11
chr3_NOD_IDD18
bM316M11
EPN details
Submitted to EMBL
13-JAN-09
AL671894.20
finished
194209 RPCI-23 3' / 5'
194209 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
8 RP23-288B16

bM288B16
EPN details
Submitted to EMBL
13-JAN-09
AL671921.16
finished
123444 RPCI-23 3' / 5'
123444 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
9 RP23-64M1
chr3_NOD_IDD18
bM64M1
EPN details
Submitted to EMBL
13-JAN-09
AL845310.4
finished
122356 RPCI-23 3' / 5'
122356 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
10 RP23-176A21
chr3_NOD_IDD18
bM176A21
EPN details
Submitted to EMBL
13-JAN-09
AL671857.16
finished
207354 RPCI-23 3' / 5'
207354 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
11 RP23-130L10
chr3_NOD_IDD18
bM130L10
EPN details
Submitted to EMBL
13-JAN-09
AL731716.10
finished
49105 RPCI-23 3' / 5'
49105 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
12 RP23-246L17
chr3_NOD_IDD18
bM246L17
EPN details
Submitted to EMBL
13-JAN-09
AL671987.12
finished
183333 RPCI-23 3' / 5'
183333 / 2001
- / -
2000
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
13 RP23-90O18
chr3_NOD_IDD18
bM90O18
EPN details
Submitted to EMBL
13-JAN-09
AL683824.8
finished
233589 RPCI-23        

Statistics

Clone Summary

Number of gaps
0
Total clones
13
Clone HTGS Phases
finished
13
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
24,000
Total finished length of fin clones w/ overlap
1,918,439
Total finished length of fin clones w/o overlap
1,894,439
Total overlap length of fin+unfin clones
24,000
Total finished length of fin+unfin clones w/ overlap
1,918,439
Total finished length of fin+unfin clones w/o overlap
1,894,439

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Other links

* quick link - http://q.sanger.ac.uk/i8ayb398