ChromoView - clone / Assembly sequencing status

Mouse: Sub region blk6_IDD10 (TPF updated: 2004-06-14)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-112E4
chr3_blk6_IDD10
bM112E4
EPN details
AL606755.7
finished
2 RP23-78G24
chr3_blk6_IDD10
bM78G24
EPN details
AL671965.6
finished
3 RP23-265O19
chr3_blk6_IDD10
bM265O19
EPN details
AL606756.17
finished
4 RP23-346G22
chr3_blk6_IDD10
bM346G22
EPN details
AL606832.4
finished
5 RP23-49O14
chr3_blk6_IDD10
bM49O14
EPN details
AL606747.13
finished
6 RP23-32L6
chr3_blk6_IDD10
bM32L6
EPN details
AL606745.11
finished
7 RP23-212F17
chr3_blk6_IDD10
bM212F17
EPN details
AL583890.13
finished
8 RP23-154F2

bM154F2
EPN details
AL606928.9
finished
9 RP23-183J6
chr3_blk6_IDD10
bM183J6
EPN details
AL606920.5
finished
  GAP (type-3) length unknown    
11 RP23-325J22
chr3_blk6_IDD10
bM325J22
EPN details
AL606749.13
finished
12 RP23-70A7
chr3_blk6_IDD10
bM70A7
EPN details
AL606742.11
finished
13 RP23-335A19
chr3_blk6_IDD10
bM335A19
EPN details
AL606750.13
finished
14 RP23-356K2
chr3_blk6_IDD10
bM356K2
EPN details
AL606757.11
finished
15 RP23-267O21
chr3_blk6_IDD10
bM267O21
EPN details
AL606744.30
finished
16 RP23-357M4
chr3_blk6_IDD10
bM357M4
EPN details
AL691436.7
finished
17 RP24-369O13
chr3_blk6_IDD10
bN369O13
EPN details
AL845553.5
finished
18 RP23-357D5
chr3_blk6_IDD10
bM357D5
EPN details
AL669872.8
finished
19 RP23-434L7
chr3_blk6_IDD10
bM434L7
EPN details
AL645930.15
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 201990 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606755.7 1 201990 +
201991 243427 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL671965.6 2001 43437 +
243428 435403 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606756.17 2001 193976 +
435404 590831 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606832.4 2001 157428 +
590832 697130 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606747.13 2001 108299 +
697131 887462 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606745.11 2001 192332 +
887463 1008381 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL583890.13 2001 122919 +
1008382 1192986 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606928.9 2001 186605 +
1192987 1280283 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AL606920.5 2001 89297 +
1280284 1330283 10 N 50000 contig no
1330284 1419394 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL606749.13 1 89111 +
1419395 1603953 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL606742.11 2001 186559 +
1603954 1809319 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL606750.13 2001 207366 +
1809320 1934432 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL606757.11 2001 127113 +
1934433 2118299 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL606744.30 2001 185867 +
2118300 2182927 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL691436.7 2001 66628 +
2182928 2191371 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL845553.5 2001 10444 +
2191372 2389044 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL669872.8 2001 199673 +
2389045 2615037 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 AL645930.15 2001 227993 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-112E4
chr3_blk6_IDD10
bM112E4
EPN details
Submitted to EMBL
13-JAN-09
AL606755.7
finished
201990 RPCI-23 3' / 5'
201990 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
2 RP23-78G24
chr3_blk6_IDD10
bM78G24
EPN details
Submitted to EMBL
13-JAN-09
AL671965.6
finished
43437 RPCI-23 3' / 5'
43437 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
3 RP23-265O19
chr3_blk6_IDD10
bM265O19
EPN details
Submitted to EMBL
13-JAN-09
AL606756.17
finished
193976 RPCI-23 3' / 5'
193976 / 2001
- / -
2000
0
Identified
2004-06-14
find_overl...
jgrg
 
4 RP23-346G22
chr3_blk6_IDD10
bM346G22
EPN details
Analysed
12-MAR-02
AL606832.4
finished
157428 RPCI-23 3' / 5'
157428 / 2001
- / -
2000
0
Identified
2004-06-14
find_overl...
jgrg
 
5 RP23-49O14
chr3_blk6_IDD10
bM49O14
EPN details
Submitted to EMBL
13-JAN-09
AL606747.13
finished
108299 RPCI-23 3' / 5'
108299 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
6 RP23-32L6
chr3_blk6_IDD10
bM32L6
EPN details
Submitted to EMBL
13-JAN-09
AL606745.11
finished
192332 RPCI-23 3' / 5'
192332 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
7 RP23-212F17
chr3_blk6_IDD10
bM212F17
EPN details
Submitted to EMBL
13-JAN-09
AL583890.13
finished
122919 RPCI-23 3' / 5'
122919 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
8 RP23-154F2

bM154F2
EPN details
Submitted to EMBL
13-JAN-09
AL606928.9
finished
186605 RPCI-23 3' / 5'
186605 / 2001
- / -
2000
0
Identified
2004-06-14
find_overl...
jgrg
 
9 RP23-183J6
chr3_blk6_IDD10
bM183J6
EPN details
Analysed
09-NOV-01
AL606920.5
finished
89297 RPCI-23        
  GAP (type-3) length unknown                  
11 RP23-325J22
chr3_blk6_IDD10
bM325J22
EPN details
Submitted to EMBL
13-JAN-09
AL606749.13
finished
89111 RPCI-23 3' / 5'
89111 / 2001
- / -
2000
0
Identified
2004-06-14
find_overl...
jgrg
 
12 RP23-70A7
chr3_blk6_IDD10
bM70A7
EPN details
Submitted to EMBL
13-JAN-09
AL606742.11
finished
186559 RPCI-23 3' / 5'
186559 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
13 RP23-335A19
chr3_blk6_IDD10
bM335A19
EPN details
Submitted to EMBL
13-JAN-09
AL606750.13
finished
207366 RPCI-23 3' / 5'
207366 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
14 RP23-356K2
chr3_blk6_IDD10
bM356K2
EPN details
Submitted to EMBL
13-JAN-09
AL606757.11
finished
127113 RPCI-23 3' / 5'
127113 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
15 RP23-267O21
chr3_blk6_IDD10
bM267O21
EPN details
Submitted to EMBL
13-JAN-09
AL606744.30
finished
185867 RPCI-23 3' / 5'
185867 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
16 RP23-357M4
chr3_blk6_IDD10
bM357M4
EPN details
Submitted to EMBL
13-JAN-09
AL691436.7
finished
66628 RPCI-23 3' / 5'
66628 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
17 RP24-369O13
chr3_blk6_IDD10
bN369O13
EPN details
Submitted to EMBL
13-JAN-09
AL845553.5
finished
10444 RPCI-24 3' / 5'
10444 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
18 RP23-357D5
chr3_blk6_IDD10
bM357D5
EPN details
Submitted to EMBL
13-JAN-09
AL669872.8
finished
199673 RPCI-23 3' / 5'
199673 / 2001
- / -
2000
0
Identified
2014-09-19
fetch_ncbi...
humpub
 
19 RP23-434L7
chr3_blk6_IDD10
bM434L7
EPN details
Submitted to EMBL
13-JAN-09
AL645930.15
finished
227993 RPCI-23        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
32,000
Total finished length of fin clones w/ overlap
2,410,432
Total finished length of fin clones w/o overlap
2,378,432
Total overlap length of fin+unfin clones
32,000
Total finished length of fin+unfin clones w/ overlap
2,410,432
Total finished length of fin+unfin clones w/o overlap
2,378,432

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Other links

* quick link - http://q.sanger.ac.uk/tintjd6n