ChromoView - clone / Assembly sequencing status

Human: Sub region GABRB3 (TPF updated: 2004-05-19)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
Chr_15ctg
AC104569
AC104569.7
finished
2
Chr_15ctg
AC135999
AC135999.4
finished
  GAP (type-3) length 44000 bps    
4
Chr_15ctg
AC136992
AC136992.4
finished
5
Chr_15ctg
AC127511
AC127511.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 152001 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC104569.7 1 152001 +
152002 198931 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC135999.4 1 46930 -
198932 242931 3 N 44000 contig no
242932 258896 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC136992.4 1 15965 -
258897 458635 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC127511.7 1 199739 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
Chr_15ctg
AC104569
-
-
AC104569.7
finished
152001 - 3' / 3'
152001 / 46930
- / -
54262
1.26
Identified
2014-08-22
fetch_ncbi...
humpub
Certificate approved
2
Chr_15ctg
AC135999
-
-
AC135999.4
finished
101277 -        
  GAP (type-3) length 44000 bps                  
4
Chr_15ctg
AC136992
-
-
AC136992.4
finished
15965 - 5' / 3'
1 / 199739
- / -
2210
0
Identified
2004-05-19
find_overl...
jgrg
 
5
Chr_15ctg
AC127511
-
-
AC127511.7
finished
201949 -        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
56,472
Total finished length of fin clones w/ overlap
471,192
Total finished length of fin clones w/o overlap
414,720
Total overlap length of fin+unfin clones
56,472
Total finished length of fin+unfin clones w/ overlap
471,192
Total finished length of fin+unfin clones w/o overlap
414,720

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Other links

* quick link - http://q.sanger.ac.uk/dtkfvt6o