ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_25 (TPF updated: 2013-10-24)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 DKEY-87B19
ctg1044
zK87B19
CR925816.4
finished
2 CH211-156B18
ctg1044
zC156B18
CR628404.7
finished
3 DKEY-14O4
ctg1044
zK14O4
CR854929.8
finished
4 CH211-63C23
ctg1044
zC63C23
BX470204.13
finished
  GAP (type-3) length unknown    
6 RP71-44O4
ctg2013
bZ44O4
CU104744.7
finished
7 CH211-227E15
ctg2013
zC227E15
AL935169.6
finished
  GAP (type-3) length unknown    
9 CH211-156J19
ctg2020
zC156J19
CR381605.5
finished
  GAP (type-3) length unknown    
11 DKEY-178E8
ctg2318
zK178E8
CR847896.10
finished
  GAP (type-3) length unknown    
13 CH211-146D6
ctg2326
zC146D6
BX001042.4
finished
  GAP (type-3) length unknown    
15 DKEYP-36E3
ctg2335
zKp36E3
BX511147.12
finished
  GAP (type-3) length unknown    
17 CH211-284P4
ctg2336
zC284P4
BX855604.5
finished
  GAP (type-3) length unknown    
19 CH211-234B4
ctg2338
zC234B4
AL954645.7
finished
  GAP (type-3) length unknown    
21 DKEY-234B16
ctg2339
zK234B16
CR954959.10
finished
  GAP (type-3) length unknown    
23 CH211-235O4
ctg2353
zC235O4
CR376782.8
finished
  GAP (type-3) length unknown    
25 DKEY-207B21
ctg2381
zK207B21
CR384053.8
finished
  GAP (type-3) length unknown    
27 CH211-193K3
ctg2668
zC193K3
CR352222.6
finished
28 CH73-271C12
ctg2668
zH271C12
CU463131.6
finished
  GAP (type-3) length unknown    
30 DKEY-24J21
ctg2746
zK24J21
BX005464.7
finished
31 DKEY-19L19
ctg2746
zK19L19
BX248137.9
finished
  GAP (type-3) length unknown    
33 CH211-207N1
ctg4527
zC207N1
CR318606.11
finished
  GAP (type-3) length unknown    
35 DKEY-103K19
ctg6379
zK103K19
CT027678.10
finished
36 BUSM1-254P9
ctg6379
dZ254P9
AL954316.5
finished
  GAP (type-3) length unknown    
38 DKEY-83M2
ctg6467
zK83M2
BX664715.25
finished
  GAP (type-3) length unknown    
40 CH211-199M16
ctg6511
zC199M16
CR354535.11
finished
  GAP (type-3) length unknown    
42 CH211-204C7
ctg6806
zC204C7
AL773564.8
finished
  GAP (type-3) length unknown    
44 CH211-266F12
ctg6808
zC266F12
BX510323.8
finished
  GAP (type-3) length unknown    
46 CH211-214K3
ctg7074
zC214K3
AL954667.9
finished
  GAP (type-3) length unknown    
48 DKEY-164J20
ctg7075
zK164J20
BX324121.9
finished
49 CH211-117D15
ctg7075
zC117D15
BX942843.5
finished
50 DKEY-65P15
ctg7075
zK65P15
BX004889.8
finished
51 DKEY-101H2
ctg7075
zK101H2
CR533574.5
finished
52 DKEY-246P3
ctg7075
zK246P3
CR513783.5
finished
  GAP (type-3) length unknown    
54 DKEYP-32G6
ctg7091
zKp32G6
BX294435.5
finished
  GAP (type-3) length unknown    
56 DKEY-79K17
ctg7092
zK79K17
CR792421.7
finished
  GAP (type-3) length unknown    
58 DKEY-217J16
ctg7121
zK217J16
BX548049.9
finished
59 DKEY-5M24
ctg7121
zK5M24
BX571822.6
finished
60 CH211-163I12
ctg7121
zC163I12
BX005420.7
finished
  GAP (type-3) length unknown    
62 DKEY-264B7
ctg7125
zK264B7
CR788324.7
finished
  GAP (type-3) length unknown    
64 CH211-93J7
ctg7147
zC93J7
AL929293.7
finished
  GAP (type-3) length unknown    
66 CH211-198E11
ctg7162
zC198E11
CR382364.23
finished
67 DKEY-239O7
ctg7162
zK239O7
CR759840.6
finished
68 CH211-239K10
ctg7162
zC239K10
CR936468.7
finished
69 DKEY-17G17
ctg7162
zK17G17
CR383674.8
finished
70 DKEY-284H11
ctg7162
zK284H11
CR762381.8
finished
71 CH211-253F2
ctg7162
zC253F2
BX510997.9
finished
72 DKEYP-4E3
ctg7162
zKp4E3
BX296517.6
finished
  GAP (type-3) length unknown    
74 DKEY-257P9
ctg7165
zK257P9
BX255928.7
finished
75 CH211-140G18
ctg7165
zC140G18
BX284614.8
finished
76 CH73-124E9
ctg7165
zH124E9
CU062664.9
finished
  GAP (type-3) length unknown    
78 CH211-233H4
ctg7200
zC233H4
CT033821.8
finished
  GAP (type-3) length unknown    
80 CH211-214G2
ctg7202
zC214G2
BX005431.3
finished
  GAP (type-3) length unknown    
82 CH73-220M18
ctg7202_1
zH220M18
CU181911.8
finished
  GAP (type-3) length unknown    
84 CH1073-403M23
ctg7202_2
zFD403M23
CU928120.4
finished
  GAP (type-3) length unknown    
86 CH73-1H19
ctg7202_3
zH1H19
CU181905.12
finished
  GAP (type-3) length unknown    
88 DKEY-36I10
ctg7202_4
zK36I10
CR936277.11
finished
  GAP (type-3) length unknown    
90 CH73-226A21
ctg7202_5
zH226A21
CU207310.10
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 45684 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CR925816.4 1 45684 +
45685 212430 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CR628404.7 2001 168746 +
212431 284864 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CR854929.8 2001 74434 +
284865 468054 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 BX470204.13 1 183190 -
468055 518054 5 N 50000 contig no
518055 537224 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 CU104744.7 1 19170 +
537225 693346 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL935169.6 2001 158122 +
693347 743346 8 N 50000 contig no
743347 923872 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CR381605.5 1 180526 +
923873 973872 10 N 50000 contig no
973873 1115143 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CR847896.10 1 141271 +
1115144 1165143 12 N 50000 contig no
1165144 1333338 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 BX001042.4 1 168195 +
1333339 1383338 14 N 50000 contig no
1383339 1533723 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 BX511147.12 1 150385 +
1533724 1583723 16 N 50000 contig no
1583724 1736484 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 BX855604.5 1 152761 +
1736485 1786484 18 N 50000 contig no
1786485 1968625 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 AL954645.7 1 182141 +
1968626 2018625 20 N 50000 contig no
2018626 2179902 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CR954959.10 1 161277 +
2179903 2229902 22 N 50000 contig no
2229903 2350184 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 CR376782.8 1 120282 +
2350185 2400184 24 N 50000 contig no
2400185 2576991 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CR384053.8 1 176807 +
2576992 2626991 26 N 50000 contig no
2626992 2681467 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 CR352222.6 1 54476 +
2681468 2686467 28 N 5000 No overlap in database    
2686468 2806821 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CU463131.6 1 120354 +
2806822 2856821 30 N 50000 contig no
2856822 3056460 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 BX005464.7 1 199639 +
3056461 3061460 32 N 5000 No overlap in database    
3061461 3271356 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 BX248137.9 1 209896 +
3271357 3321356 34 N 50000 contig no
3321357 3509887 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CR318606.11 1 188531 +
3509888 3559887 36 N 50000 contig no
3559888 3694226 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 CT027678.10 1 134339 +
3694227 3730786 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 AL954316.5 1 36560 -
3730787 3780786 39 N 50000 contig no
3780787 4011959 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 BX664715.25 1 231173 +
4011960 4061959 41 N 50000 contig no
4061960 4287098 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 CR354535.11 1 225139 +
4287099 4337098 43 N 50000 contig no
4337099 4496861 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 AL773564.8 1 159763 +
4496862 4546861 45 N 50000 contig no
4546862 4716165 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 46 BX510323.8 1 169304 +
4716166 4766165 47 N 50000 contig no
4766166 4968822 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 48 AL954667.9 1 202657 +
4968823 5018822 49 N 50000 contig no
5018823 5199987 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 53 BX324121.9 1 181165 +
5199988 5201981 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 53 BX942843.5 2001 3994 +
5201982 5453403 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 53 BX004889.8 2001 253422 +
5453404 5458524 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 53 CR533574.5 2001 7121 +
5458525 5463524 54 N 5000 No overlap in database    
5463525 5634205 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 55 CR513783.5 1 170681 +
5634206 5684205 56 N 50000 contig no
5684206 5813066 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 BX294435.5 1 128861 +
5813067 5863066 58 N 50000 contig no
5863067 6028553 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 59 CR792421.7 1 165487 +
6028554 6078553 60 N 50000 contig no
6078554 6253901 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX548049.9 1 175348 +
6253902 6415689 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX571822.6 2001 163788 +
6415690 6556013 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 63 BX005420.7 2001 142324 +
6556014 6606013 64 N 50000 contig no
6606014 6799374 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 CR788324.7 1 193361 +
6799375 6849374 66 N 50000 contig no
6849375 6858335 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 67 AL929293.7 1 8961 +
6858336 6908335 68 N 50000 contig no
6908336 7113017 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 CR382364.23 1 204682 +
7113018 7223088 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 CR759840.6 1 110071 +
7223089 7238316 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 CR936468.7 2001 17228 +
7238317 7448402 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 CR383674.8 2001 212086 +
7448403 7570827 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 CR762381.8 2001 124425 +
7570828 7673444 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 BX510997.9 2001 104617 +
7673445 7781742 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 75 BX296517.6 2001 110298 +
7781743 7831742 76 N 50000 contig no
7831743 7962575 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 78 BX255928.7 2001 132833 -
7962576 8123403 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 78 BX284614.8 1 160828 -
8123404 8128403 79 N 5000 No overlap in database    
8128404 8155830 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 80 CU062664.9 1 27427 +
8155831 8205830 81 N 50000 contig no
8205831 8328997 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 82 CT033821.8 1 123167 +
8328998 8378997 83 N 50000 contig no
8378998 8579588 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 84 - 84 BX005431.3 1 200591 +
8579589 8629588 85 N 50000 contig no
8629589 8686062 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 86 CU181911.8 1 56474 +
8686063 8736062 87 N 50000 contig no
8736063 8766010 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 88 CU928120.4 1 29948 +
8766011 8816010 89 N 50000 contig no
8816011 8898239 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 90 CU181905.12 1 82229 +
8898240 8948239 91 N 50000 contig no
8948240 9052255 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 92 CR936277.11 1 104016 +
9052256 9102255 93 N 50000 contig no
9102256 9153654 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 94 CU207310.10 1 51399 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
34
Gap types
type-3
34
Total clones
56
Clone HTGS Phases
finished
56
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
119,324
Total finished length of fin clones w/ overlap
7,544,568
Total finished length of fin clones w/o overlap
7,425,244
Total overlap length of fin+unfin clones
119,324
Total finished length of fin+unfin clones w/ overlap
7,544,568
Total finished length of fin+unfin clones w/o overlap
7,425,244

Dovetails

# rank accession status length date
1 36 AL954316.5 unfinished 1 Fri, 04 Sep 2015 03:01

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/15yg8n6i