ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_24 (TPF updated: 2016-11-15)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP71-30L21
ctg166
bZ30L21
CR759884.8
finished
  GAP (type-3) length unknown    
3 CH211-236I20
ctg1841
zC236I20
BX537129.6
finished
  GAP (type-3) length unknown    
5 DKEY-12G20
ctg2236
zK12G20
CR376788.13
finished
  GAP (type-3) length unknown    
7 CH211-281M5
ctg2271
zC281M5
AL974313.6
finished
  GAP (type-3) length unknown    
9 CH211-203L23
ctg2276
zC203L23
CR847958.6
finished
  GAP (type-3) length unknown    
11 CH211-244M18
ctg2287
zC244M18
CR847905.23
finished
  GAP (type-3) length unknown    
13 CH211-232J10
ctg2292
zC232J10
CT574572.8
finished
  GAP (type-3) length unknown    
15 CH211-206G7
ctg2846
zC206G7
BX088685.8
finished
  GAP (type-3) length unknown    
17 CH211-144A4
ctg3004
zC144A4
CR392367.6
finished
  GAP (type-3) length unknown    
19 CH211-117H23
ctg3285
zC117H23
AL954147.12
finished
20 CH211-254P12
ctg3285
zC254P12
BX294098.11
finished
21 CH211-262K18
ctg3285
zC262K18
BX322565.11
finished
22 DKEYP-80F4
ctg3285
zKp80F4
CR352254.6
finished
23 DKEYP-78B1
ctg3285
zKp78B1
BX322785.6
finished
  GAP (type-3) length unknown    
25 DKEY-175H17
ctg3321
zK175H17
CR548632.13
finished
  GAP (type-3) length unknown    
27 DKEY-178I20
ctg6024
zK178I20
CU302293.12
finished
  GAP (type-3) length unknown    
29 CH211-215A11
ctg6543
zC215A11
BX950199.14
finished
  GAP (type-3) length unknown    
31 DKEY-18L4
ctg6596
zK18L4
CR354591.13
finished
  GAP (type-3) length unknown    
33 DKEY-53I6
ctg6655
zK53I6
BX005411.8
finished
34 CH211-182K2
ctg6655
zC182K2
BX005067.6
finished
35 CH211-220I12
ctg6655
zC220I12
BX276112.19
finished
  GAP (type-3) length unknown    
37 CH211-215E6
ctg6657
zC215E6
AL954717.9
finished
38 CH1073-161D24
ctg6657
zFD161D24
FO904953.3
contiguous
  GAP (type-3) length unknown    
40 CH211-129O15
ctg6659
zC129O15
CR388379.15
finished
  GAP (type-3) length unknown    
42 DKEYP-86G11
ctg6797
zKp86G11
CR376736.5
finished
43 DKEY-23M15
ctg6797
zK23M15
CR381573.14
finished
  GAP (type-3) length unknown    
45 CH211-14N18
ctg6798
zC14N18
BX537140.3
finished
  GAP (type-3) length unknown    
47 CH211-118E10
ctg6799
zC118E10
CR352255.9
finished
  GAP (type-3) length unknown    
49 CH211-150E4
ctg6803
zC150E4
BX004887.2
finished
  GAP (type-3) length unknown    
51 CH211-119E16
ctg6809
zC119E16
AL928830.10
finished
  GAP (type-3) length unknown    
53 CH211-281C19
ctg6810
zC281C19
BX296532.7
finished
  GAP (type-3) length unknown    
55 CH211-186F16
ctg7013
zC186F16
BX005291.6
finished
  GAP (type-3) length unknown    
57 CH211-59K6
ctg7085
zC59K6
CR847540.6
finished
  GAP (type-3) length unknown    
59 CH211-208O6
ctg7126
zC208O6
BX248581.17
finished
60 CH211-250A24
ctg7126
zC250A24
AL929225.6
finished
61 DKEY-1P6
ctg7126
zK1P6
BX004786.8
finished
  GAP (type-3) length unknown    
63 DKEY-229F21
ctg7142
zK229F21
CT573250.8
finished
  GAP (type-3) length unknown    
65 DKEY-197K13
ctg7143
zK197K13
CR753885.7
finished
66 DKEY-229H19
ctg7143
zK229H19
CR384074.11
finished
  GAP (type-3) length unknown    
68 DKEY-189O24
ctg7144
zK189O24
CR376733.10
finished
  GAP (type-3) length unknown    
70 DKEY-61O7
ctg7145
zK61O7
CR391983.14
finished
71 CH211-44M2
ctg7145
zC44M2
CR376739.10
finished
72 DKEY-72L5
ctg7145
zK72L5
CR762409.6
finished
73 CH211-268D5
ctg7145
zC268D5
BX247867.7
finished
  GAP (type-3) length unknown    
75 DKEY-9O22
ctg7146
zK9O22
BX247906.8
finished
76 CH211-284C3
ctg7146
zC284C3
BX005418.11
finished
  GAP (type-3) length unknown    
78 CH211-234A12
ctg7149
zC234A12
BX323052.5
finished
  GAP (type-3) length unknown    
80 DKEY-261I18
ctg7160
zK261I18
CR759891.9
finished
  GAP (type-3) length unknown    
82 DKEY-100G2
ctg7237
zK100G2
CR759424.7
finished
83 CH211-271O13
ctg1474_1
zC271O13
CR381529.13
finished
  GAP (type-3) length unknown    
85 CH211-202E9
ctg2280_1
zC202E9
CT476804.7
finished
  GAP (type-3) length unknown    
87 CH211-124I7
ctg7025_1
zC124I7
CU151878.25
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 16288 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR759884.8 1 16288 +
16289 66288 2 N 50000 contig no
66289 232943 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX537129.6 1 166655 +
232944 282943 4 N 50000 contig no
282944 471464 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CR376788.13 1 188521 +
471465 521464 6 N 50000 contig no
521465 706629 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AL974313.6 1 185165 +
706630 756629 8 N 50000 contig no
756630 898971 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CR847958.6 1 142342 +
898972 948971 10 N 50000 contig no
948972 1102278 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CR847905.23 1 153307 +
1102279 1152278 12 N 50000 contig no
1152279 1314149 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 CT574572.8 1 161871 +
1314150 1364149 14 N 50000 contig no
1364150 1533304 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 BX088685.8 1 169155 +
1533305 1583304 16 N 50000 contig no
1583305 1750857 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 CR392367.6 1 167553 +
1750858 1800857 18 N 50000 contig no
1800858 1988924 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 AL954147.12 1 188067 +
1988925 1993924 20 N 5000 No overlap in database    
1993925 2146469 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 BX294098.11 1 152545 +
2146470 2305450 22 F BX322565.11
Double 3-prime join to 'BX322565.11'
1 158981 +
2305451 2310450 23 N 5000 Bad overlap - double 3 prime join    
2310451 2324803 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 CR352254.6 2001 16353 +
2324804 2499405 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 BX322785.6 1 174602 -
2499406 2549405 26 N 50000 contig no
2549406 2727798 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 CR548632.13 1 178393 +
2727799 2777798 28 N 50000 contig no
2777799 2956942 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CU302293.12 1 179144 +
2956943 3006942 30 N 50000 contig no
3006943 3220033 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 BX950199.14 1 213091 +
3220034 3270033 32 N 50000 contig no
3270034 3488347 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 CR354591.13 1 218314 +
3488348 3538347 34 N 50000 contig no
3538348 3655495 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX005411.8 2001 119148 -
3655496 3818187 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX005067.6 1 162692 -
3818188 3962252 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 37 BX276112.19 1 144065 -
3962253 4012252 38 N 50000 contig no
4012253 4223351 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 AL954717.9 1 211099 +
4223352 4228351 40 N 5000 No overlap in database    
4228352 4263103 41 A FO904953.3 1 34752 +
4263104 4313103 42 N 50000 contig no
4313104 4462910 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 CR388379.15 1 149807 +
4462911 4512910 44 N 50000 contig no
4512911 4717448 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 CR376736.5 1 204538 +
4717449 4835824 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 CR381573.14 2001 120376 +
4835825 4885824 47 N 50000 contig no
4885825 5064901 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 48 BX537140.3 1 179077 +
5064902 5114901 49 N 50000 contig no
5114902 5276122 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 CR352255.9 1 161221 +
5276123 5326122 51 N 50000 contig no
5326123 5512956 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 BX004887.2 1 186834 +
5512957 5562956 53 N 50000 contig no
5562957 5745570 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 AL928830.10 1 182614 +
5745571 5795570 55 N 50000 contig no
5795571 5950599 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 56 BX296532.7 1 155029 +
5950600 6000599 57 N 50000 contig no
6000600 6123402 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 BX005291.6 1 122803 +
6123403 6173402 59 N 50000 contig no
6173403 6347666 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 CR847540.6 1 174264 +
6347667 6397666 61 N 50000 contig no
6397667 6551162 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 BX248581.17 1 153496 +
6551163 6695022 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 AL929225.6 2001 145860 -
6695023 6873254 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 64 BX004786.8 1 178232 -
6873255 6923254 65 N 50000 contig no
6923255 7091554 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 CT573250.8 1 168300 +
7091555 7141554 67 N 50000 contig no
7141555 7287426 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 69 CR753885.7 1 145872 +
7287427 7423877 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 69 CR384074.11 2001 138451 +
7423878 7473877 70 N 50000 contig no
7473878 7652378 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 CR376733.10 1 178501 +
7652379 7702378 72 N 50000 contig no
7702379 7779984 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR391983.14 1 77606 +
7779985 7941455 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR376739.10 2001 163471 +
7941456 8056941 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 75 CR762409.6 2001 117486 +
8056942 8061941 76 N 5000 No overlap in database    
8061942 8208869 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 BX247867.7 1 146928 +
8208870 8258869 78 N 50000 contig no
8258870 8472786 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 BX247906.8 1 213917 +
8472787 8477786 80 N 5000 No overlap in database    
8477787 8633846 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 BX005418.11 1 156060 +
8633847 8683846 82 N 50000 contig no
8683847 8857828 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 83 BX323052.5 1 173982 +
8857829 8907828 84 N 50000 contig no
8907829 9013933 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 CR759891.9 1 106105 +
9013934 9063933 86 N 50000 contig no
9063934 9177027 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 87 CR759424.7 1 113094 +
9177028 9182027 88 N 5000 No overlap in database    
9182028 9252175 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 89 CR381529.13 1 70148 +
9252176 9302175 90 N 50000 contig no
9302176 9488918 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 91 CT476804.7 1 186743 +
9488919 9538918 92 N 50000 contig no
9538919 9711373 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 CU151878.25 1 172455 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
35
Gap types
type-3
35
Total clones
52
Clone HTGS Phases
contiguous
1
finished
51
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
142,734
Total finished length of fin clones w/ overlap
7,969,204
Total finished length of fin clones w/o overlap
7,826,470
Total overlap length of fin+unfin clones
142,734
Total finished length of fin+unfin clones w/ overlap
8,003,956
Total finished length of fin+unfin clones w/o overlap
7,861,222

Dovetails

Help

# rank accession status length date
1 21 BX322565 unfinished 2 Mon, 05 Dec 2016 03:46
2 59 BX248581 unfinished 49,376 Mon, 05 Dec 2016 03:46

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