ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_23 (TPF updated: 2014-03-26)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CH211-226I4
ctg2139
zC226I4
AL935305.13
finished
  GAP (type-3) length unknown    
3 DKEY-98H23
ctg2144
zK98H23
BX470267.5
finished
  GAP (type-3) length unknown    
5 DKEY-11D10
ctg2145
zK11D10
CR354437.13
finished
  GAP (type-3) length unknown    
7 CH211-130M12
ctg2146
zC130M12
BX005002.9
finished
  GAP (type-3) length unknown    
9 DKEY-12B15
ctg2148
zK12B15
AL954838.14
finished
  GAP (type-3) length unknown    
11 DKEY-24C22
ctg2149
zK24C22
BX927069.11
finished
12 CH211-229G3
ctg2149
zC229G3
AL807377.10
finished
13 CH211-240A8
ctg2149
zC240A8
BX119991.17
finished
  GAP (type-3) length unknown    
15 CH211-46H12
ctg2152
zC46H12
BX469903.9
finished
  GAP (type-3) length unknown    
17 CH211-197C5
ctg2155
zC197C5
CR376775.7
finished
  GAP (type-3) length unknown    
19 CH211-132N11
ctg2160
zC132N11
BX005185.5
finished
20 CH211-209L14
ctg2160
zC209L14
BX247945.6
finished
21 CH211-279A13
ctg2160
zC279A13
BX322531.7
finished
22 CH211-212E24
ctg2160
zC212E24
AL928728.9
finished
23 DKEYP-117H10
ctg2160
zKp117H10
BX957247.4
finished
  GAP (type-3) length unknown    
25 DKEY-193P22
ctg2163
zK193P22
CR774178.17
finished
  GAP (type-3) length unknown    
27 RP71-7A17
ctg2164
bZ7A17
BX546488.10
finished
28 CH211-157B19
ctg2164
zC157B19
AL929522.11
finished
29 CH211-15J16
ctg2164
zC15J16
BX927368.13
finished
  GAP (type-3) length unknown    
31 CH211-189L6
ctg2166
zC189L6
AL929578.4
finished
  GAP (type-3) length unknown    
33 DKEYP-97F4
ctg2168
zKp97F4
CR318627.19
finished
  GAP (type-3) length unknown    
35 CH211-133L21
ctg2172
zC133L21
BX323873.9
finished
  GAP (type-3) length unknown    
37 CH211-175P10
ctg2173
zC175P10
CR628407.6
finished
38 DKEY-208D13
ctg2173
zK208D13
BX649301.3
finished
39 DKEY-47C8
ctg2173
zK47C8
CR450723.12
finished
  GAP (type-3) length unknown    
41 RP71-47G15
ctg2175
bZ47G15
BX465189.9
finished
42 DKEY-28B17
ctg2175
zK28B17
BX004787.8
finished
  GAP (type-3) length unknown    
44 DKEY-12I13
ctg2181
zK12I13
BX005199.10
finished
45 CH211-158G13
ctg2181
zC158G13
AL929508.6
finished
46 CH211-222H22
ctg2181
zC222H22
AL954133.5
finished
47 DKEYP-77G7
ctg2181
zKp77G7
BX571765.6
finished
48 DKEY-220G10
ctg2181
zK220G10
BX548008.7
finished
49 CH211-262O24
ctg2181
zC262O24
BX294392.3
finished
50 DKEY-65I13
ctg2181
zK65I13
BX284665.21
finished
51 DKEY-283B10
ctg2181
zK283B10
CR352239.11
finished
  GAP (type-3) length unknown    
53 RP71-44B8
ctg2182
bZ44B8
BX322794.6
finished
  GAP (type-3) length unknown    
55 CH211-11F6
ctg2183
zC11F6
BX548074.9
finished
  GAP (type-2) length unknown    
57 CH1073-121E5
ctg2184
zFD121E5
FQ311953.5
finished
  GAP (type-3) length unknown    
59 DKEYP-27C2
ctg2185
zKp27C2
BX321900.10
finished
60 DKEY-101O12
ctg2185
zK101O12
BX323989.4
finished
  GAP (type-3) length unknown    
62 DKEY-97G16
ctg2187
zK97G16
BX005387.7
finished
63 CH211-67N10
ctg2187
zC67N10
AL954656.9
finished
  GAP (type-3) length unknown    
65 DKEY-3P10
ctg2191
zK3P10
CR361559.12
finished
  GAP (type-3) length unknown    
67 CH211-201A8
ctg2198
zC201A8
BX928749.12
finished
  GAP (type-3) length unknown    
69 DKEYP-11H3
ctg2200
zKp11H3
CR318644.8
finished
70 CH211-12E7
ctg2200
zC12E7
BX323831.7
finished
71 DKEY-17A2
ctg2200
zK17A2
CR293516.8
finished
72 DKEY-266K15
ctg2200
zK266K15
BX530074.13
finished
73 CH211-209B6
ctg2200
zC209B6
BX322566.6
finished
  GAP (type-3) length unknown    
75 CH211-233F15
ctg2204
zC233F15
AL935205.13
finished
  GAP (type-3) length unknown    
77 CH211-258K6
ctg2206
zC258K6
CR385074.10
finished
  GAP (type-3) length unknown    
79 RP71-40J23
ctg2212
bZ40J23
BX248228.3
finished
  GAP (type-3) length unknown    
81 DKEYP-123E12
ctg2218
zKp123E12
CR352236.17
finished
  GAP (type-3) length unknown    
83 CH211-222C18
ctg2219
zC222C18
BX322662.12
finished
84 CH211-51B3
ctg2219
zC51B3
CR318669.18
finished
  GAP (type-3) length unknown    
86 CH211-286G12
ctg2228
zC286G12
BX005483.3
finished
  GAP (type-3) length unknown    
88 CH211-113M13
ctg2302
zC113M13
BX649505.6
finished
89 CH211-107H7
ctg2302
zC107H7
BX640495.10
finished
  GAP (type-3) length unknown    
91 RP71-17G11
ctg2304
bZ17G11
BX324148.9
finished
92 DKEYP-116B6
ctg2304
zKp116B6
BX957303.8
finished
93 CH211-167F3
ctg2304
zC167F3
BX957365.5
finished
94 CH211-253D2
ctg2304
zC253D2
CR318635.8
finished
95 DKEY-45K13
ctg2304
zK45K13
CR361545.10
finished
96 CH211-279M23
ctg2304
zC279M23
BX005182.13
finished
97 DKEY-115O4
ctg2304
zK115O4
CR381567.9
finished
98 DKEY-27C4
ctg2304
zK27C4
BX571968.10
finished
  GAP (type-3) length unknown    
100 DKEY-124N6
ctg2637
zK124N6
CU457776.6
finished
  GAP (type-3) length unknown    
102 DKEY-13O11
ctg2804
zK13O11
BX004853.7
finished
  GAP (type-3) length unknown    
104 CH211-214J4
ctg2900
zC214J4
BX119982.8
finished
  GAP (type-3) length unknown    
106 DKEY-115F16
ctg3077
zK115F16
BX537357.7
finished
107 DKEYP-33D4
ctg3077
zKp33D4
AL845367.6
finished
108 DKEY-105A6
ctg3077
zK105A6
AL845422.6
finished
109 DKEYP-95E3
ctg3077
zKp95E3
AL929139.7
finished
110 DKEY-34D20
ctg3077
zK34D20
AL929038.13
finished
111 CH211-74M19
ctg3077
zC74M19
BX928757.9
finished
112 DKEY-236H14
ctg3077
zK236H14
CR855392.9
finished
  GAP (type-3) length unknown    
114 DKEYP-12B1
ctg3194
zKp12B1
CT737136.8
finished
  GAP (type-3) length unknown    
116 DKEY-22L9
ctg3262
zK22L9
CR388032.9
finished
  GAP (type-3) length unknown    
118 CH211-39F16
ctg6025
zC39F16
CU041388.6
finished
  GAP (type-3) length unknown    
120 CH211-59K8
ctg6153
zC59K8
AL929568.12
finished
  GAP (type-3) length unknown    
122 CH73-339H18
ctg7077
zH339H18
CU013512.6
finished
123 CH73-348C2
ctg7077
zH348C2
CT573386.5
finished
  GAP (type-3) length unknown    
125 DKEY-232A10
ctg22
zK232A10
BX510651.9
finished
126 CH211-108P13
ctg22
zC108P13
BX293534.6
finished
  GAP (type-3) length unknown    
128 CH73-250K19
ctg11
zH250K19
FO834913.1
contiguous

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 190222 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL935305.13 1 190222 +
190223 240222 2 N 50000 contig no
240223 422525 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX470267.5 1 182303 +
422526 472525 4 N 50000 contig no
472526 678432 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CR354437.13 1 205907 +
678433 728432 6 N 50000 contig no
728433 898706 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX005002.9 1 170274 +
898707 948706 8 N 50000 contig no
948707 1217030 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AL954838.14 1 268324 +
1217031 1267030 10 N 50000 contig no
1267031 1429618 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 BX927069.11 1 162588 +
1429619 1597849 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL807377.10 2001 170231 +
1597850 1697197 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 BX119991.17 2001 101348 +
1697198 1747197 14 N 50000 contig no
1747198 1922944 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 BX469903.9 1 175747 +
1922945 1972944 16 N 50000 contig no
1972945 2169790 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 CR376775.7 1 196846 +
2169791 2219790 18 N 50000 contig no
2219791 2327138 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 BX005185.5 57174 164521 -
2327139 2526483 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 BX247945.6 1 199345 -
2526484 2531483 21 N 5000 No overlap in database    
2531484 2632647 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 23 BX322531.7 1 101164 +
2632648 2839160 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 23 AL928728.9 1 206513 +
2839161 2844160 24 N 5000 No overlap in database    
2844161 3010466 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 BX957247.4 1 166306 +
3010467 3060466 26 N 50000 contig no
3060467 3262984 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 CR774178.17 1 202518 +
3262985 3312984 28 N 50000 contig no
3312985 3415308 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 BX546488.10 1 102324 +
3415309 3420308 30 N 5000 No overlap in database    
3420309 3585427 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 AL929522.11 1 165119 +
3585428 3590427 32 N 5000 No overlap in database    
3590428 3766865 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 BX927368.13 1 176438 +
3766866 3816865 34 N 50000 contig no
3816866 3959435 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 AL929578.4 1 142570 +
3959436 4009435 36 N 50000 contig no
4009436 4185566 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CR318627.19 1 176131 +
4185567 4235566 38 N 50000 contig no
4235567 4422274 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 BX323873.9 1 186708 +
4422275 4472274 40 N 50000 contig no
4472275 4571584 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 CR628407.6 1 99310 +
4571585 4719051 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 BX649301.3 1 147467 -
4719052 4724051 43 N 5000 No overlap in database    
4724052 4959038 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CR450723.12 1 234987 +
4959039 5009038 45 N 50000 contig no
5009039 5141753 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 BX465189.9 1 132715 +
5141754 5337789 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 BX004787.8 2001 198036 +
5337790 5387789 48 N 50000 contig no
5387790 5506902 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 BX005199.10 1 119113 +
5506903 5684931 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AL929508.6 2001 180029 +
5684932 5689931 51 N 5000 No overlap in database    
5689932 5896304 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 53 AL954133.5 1 206373 -
5896305 6042237 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 53 BX571765.6 2001 147933 +
6042238 6047237 54 N 5000 No overlap in database    
6047238 6233483 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 55 BX548008.7 1 186246 +
6233484 6238483 56 N 5000 No overlap in database    
6238484 6379735 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 BX294392.3 1 141252 +
6379736 6384735 58 N 5000 No overlap in database    
6384736 6613837 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 59 BX284665.21 1 229102 +
6613838 6618837 60 N 5000 No overlap in database    
6618838 6779554 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 CR352239.11 1 160717 +
6779555 6829554 62 N 50000 contig no
6829555 6974126 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 BX322794.6 1 144572 +
6974127 7024126 64 N 50000 contig no
7024127 7191140 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 BX548074.9 1 167014 +
7191141 7241140 66 N 50000 contig yes
7241141 7274311 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 67 FQ311953.5 1 33171 +
7274312 7324311 68 N 50000 contig no
7324312 7397663 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 70 BX321900.10 1 73352 +
7397664 7594038 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 70 BX323989.4 1991 198365 +
7594039 7644038 71 N 50000 contig no
7644039 7796655 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 BX005387.7 1 152617 +
7796656 7801655 73 N 5000 No overlap in database    
7801656 7982245 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 74 AL954656.9 1 180590 +
7982246 8032245 75 N 50000 contig no
8032246 8278286 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 76 CR361559.12 1 246041 +
8278287 8328286 77 N 50000 contig no
8328287 8543549 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 78 BX928749.12 1 215263 +
8543550 8593549 79 N 50000 contig no
8593550 8686533 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 CR318644.8 1 92984 +
8686534 8865171 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 BX323831.7 2001 180638 +
8865172 8907390 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 CR293516.8 2001 44219 +
8907391 9029460 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 BX530074.13 2001 124070 +
9029461 9230587 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 80 - 84 BX322566.6 2001 203127 +
9230588 9280587 85 N 50000 contig no
9280588 9431228 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 86 AL935205.13 1 150641 +
9431229 9481228 87 N 50000 contig no
9481229 9644342 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 88 CR385074.10 1 163114 +
9644343 9694342 89 N 50000 contig no
9694343 9835476 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 90 BX248228.3 1 141134 +
9835477 9885476 91 N 50000 contig no
9885477 10063948 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 92 CR352236.17 1 178472 +
10063949 10113948 93 N 50000 contig no
10113949 10323357 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 95 BX322662.12 1 209409 +
10323358 10429527 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 95 CR318669.18 2001 108170 +
10429528 10479527 96 N 50000 contig no
10479528 10662006 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 BX005483.3 1 182479 +
10662007 10712006 98 N 50000 contig no
10712007 10837170 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 100 BX649505.6 1 125164 +
10837171 10909012 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 100 BX640495.10 2001 73842 +
10909013 10959012 101 N 50000 contig no
10959013 11086368 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 107 BX324148.9 1 127356 +
11086369 11194900 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 107 BX957303.8 2001 110532 +
11194901 11209050 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 107 BX957365.5 2001 16150 +
11209051 11363362 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 107 CR318635.8 1 154312 +
11363363 11473369 106 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 107 CR361545.10 2001 112007 +
11473370 11627289 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 107 BX005182.13 1 153920 -
11627290 11632289 108 N 5000 No overlap in database    
11632290 11774706 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 110 CR381567.9 1 142417 +
11774707 11998082 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 110 BX571968.10 2001 225376 +
11998083 12048082 111 N 50000 contig no
12048083 12230065 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 112 - 112 CU457776.6 1 181983 +
12230066 12280065 113 N 50000 contig no
12280066 12462591 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 114 BX004853.7 1 182526 +
12462592 12512591 115 N 50000 contig no
12512592 12723293 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 116 BX119982.8 1 210702 +
12723294 12773293 117 N 50000 contig no
12773294 12828039 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 BX537357.7 2001 56746 -
12828040 12930685 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 AL845367.6 1 102646 +
12930686 13149821 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 AL845422.6 2001 221136 -
13149822 13218128 121 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 AL929139.7 2001 70307 -
13218129 13432108 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 AL929038.13 1 213980 -
13432109 13582263 123 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 BX928757.9 1 150155 -
13582264 13612732 124 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 124 CR855392.9 2001 32469 +
13612733 13662732 125 N 50000 contig no
13662733 13846646 126 FClick to retrieve finished assembled sequence in green bar: rank(s) 126 - 126 CT737136.8 1 183914 +
13846647 13896646 127 N 50000 contig no
13896647 14168400 128 FClick to retrieve finished assembled sequence in green bar: rank(s) 128 - 128 CR388032.9 1 271754 +
14168401 14218400 129 N 50000 contig no
14218401 14424186 130 FClick to retrieve finished assembled sequence in green bar: rank(s) 130 - 130 CU041388.6 1 205786 +
14424187 14474186 131 N 50000 contig no
14474187 14659443 132 FClick to retrieve finished assembled sequence in green bar: rank(s) 132 - 132 AL929568.12 1 185257 +
14659444 14709443 133 N 50000 contig no
14709444 14823341 134 FClick to retrieve finished assembled sequence in green bar: rank(s) 134 - 135 CU013512.6 1 113898 +
14823342 14889203 135 FClick to retrieve finished assembled sequence in green bar: rank(s) 134 - 135 CT573386.5 1 65862 -
14889204 14939203 136 N 50000 contig no
14939204 15006944 137 FClick to retrieve finished assembled sequence in green bar: rank(s) 137 - 138 BX510651.9 7196 74936 -
15006945 15015346 138 FClick to retrieve finished assembled sequence in green bar: rank(s) 137 - 138 BX293534.6 28945 37346 +
15015347 15065346 139 N 50000 contig no
15065347 15172149 140 A FO834913.1 1 106803 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
43
Gap types
type-2
1
type-3
42
Total clones
85
Clone HTGS Phases
contiguous
1
finished
84
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
137,601
Total finished length of fin clones w/ overlap
13,011,804
Total finished length of fin clones w/o overlap
12,874,203
Total overlap length of fin+unfin clones
137,601
Total finished length of fin+unfin clones w/ overlap
13,118,607
Total finished length of fin+unfin clones w/o overlap
12,981,006

Dovetails

# rank accession status length date
1 125 BX510651.9 unfinished 7,195 Mon, 31 Aug 2015 02:30

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Other links

* quick link - http://q.sanger.ac.uk/ko9ie18s