ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_20 (TPF updated: 2012-02-28)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-265K4
ctg1010
zC265K4
BX649477.10
finished
  GAP (type-3) length unknown    
3 DKEYP-89A11
ctg1915
zKp89A11
CR361550.7
finished
  GAP (type-3) length unknown    
5 CH211-246K22
ctg1932
zC246K22
BX548055.7
finished
6 DKEY-239I20
ctg1932
zK239I20
BX842691.5
finished
  GAP (type-3) length unknown    
8 DKEYP-47D4
ctg1943
zKp47D4
BX321888.21
finished
  GAP (type-3) length unknown    
10 CH211-185K2
ctg1946
zC185K2
AL935049.19
finished
  GAP (type-3) length unknown    
12 CH211-146N9
ctg1952
zC146N9
AL928790.4
finished
  GAP (type-3) length unknown    
14 CH211-197O9
ctg1953
zC197O9
BX897690.13
finished
  GAP (type-3) length unknown    
16 CH211-150A17
ctg1959
zC150A17
CT476803.10
finished
  GAP (type-3) length unknown    
18 CH211-191A24
ctg1976
zC191A24
BX571842.14
finished
  GAP (type-3) length unknown    
20 RP71-15H2
ctg2580
bZ15H2
CR792450.4
finished
  GAP (type-3) length unknown    
22 DKEY-89C16
ctg2693
zK89C16
CR855367.8
finished
  GAP (type-3) length unknown    
24 CH211-119A17
ctg2756
zC119A17
BX072572.8
finished
  GAP (type-3) length unknown    
26 DKEY-29M11
ctg2850
zK29M11
BX936454.25
finished
27 CH211-260D9
ctg2850
zC260D9
BX255947.6
finished
  GAP (type-3) length unknown    
29 DKEY-227G5
ctg3204
zK227G5
CT583675.10
finished
  GAP (type-3) length unknown    
31 CH211-194O4
ctg4501
zC194O4
BX784034.8
finished
  GAP (type-3) length unknown    
33 CH211-279A3
ctg4503
zC279A3
BX470256.11
finished
  GAP (type-3) length unknown    
35 CH211-214H24
ctg4551
zC214H24
CR759874.20
finished
  GAP (type-3) length unknown    
37 DKEYP-59G5
ctg4552
zKp59G5
CR788305.17
finished
  GAP (type-3) length unknown    
39 DKEY-23G12
ctg5006
zK23G12
CR392340.11
finished
  GAP (type-3) length unknown    
41 CH1073-183I1
ctg6039
zFD183I1
CU459148.4
finished
  GAP (type-3) length unknown    
43 CH211-235O3
ctg6318
zC235O3
BX255909.5
finished
44 CH211-248I6
ctg6318
zC248I6
BX649302.22
finished
  GAP (type-3) length unknown    
46 CH211-129O4
ctg6519
zC129O4
CR354422.7
finished
  GAP (type-3) length unknown    
48 CH211-180L14
ctg6611
zC180L14
CR407560.11
finished
  GAP (type-3) length unknown    
50 CH211-253J24
ctg6812
zC253J24
BX510327.10
finished
  GAP (type-3) length unknown    
52 DKEY-43A16
ctg6815
zK43A16
CT583724.9
finished
  GAP (type-3) length unknown    
54 CH211-266I18
ctg7080
zC266I18
BX927255.9
finished
55 DKEY-147L14
ctg7080
zK147L14
CR926887.9
finished
56 CH211-147O6
ctg7080
zC147O6
BX936462.20
finished
  GAP (type-3) length unknown    
58 CH211-220I15
ctg7081
zC220I15
BX548244.5
finished
59 CH211-171O19
ctg7081
zC171O19
BX927309.12
finished
60 DKEYP-70E6
ctg7081
zKp70E6
BX324115.8
finished
61 CH211-256L9
ctg7081
zC256L9
CR354391.7
finished
  GAP (type-3) length unknown    
63 CH211-140L7
ctg7112
zC140L7
CR759734.3
finished
  GAP (type-3) length unknown    
65 DKEY-8O19
ctg7113
zK8O19
BX545848.23
finished
  GAP (type-3) length unknown    
67 RP71-41I21
ctg7114
bZ41I21
BX321868.13
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 148317 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX649477.10 1 148317 +
148318 198317 2 N 50000 contig no
198318 379721 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR361550.7 1 181404 +
379722 429721 4 N 50000 contig no
429722 535656 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 BX548055.7 1 105935 -
535657 625845 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 BX842691.5 1 90189 -
625846 675845 7 N 50000 contig no
675846 852308 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 BX321888.21 1 176463 +
852309 902308 9 N 50000 contig no
902309 1051023 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 AL935049.19 1 148715 +
1051024 1101023 11 N 50000 contig no
1101024 1272696 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 AL928790.4 1 171673 +
1272697 1322696 13 N 50000 contig no
1322697 1450992 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 BX897690.13 1 128296 +
1450993 1500992 15 N 50000 contig no
1500993 1599072 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CT476803.10 1 98080 +
1599073 1649072 17 N 50000 contig no
1649073 1817862 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 BX571842.14 1 168790 +
1817863 1867862 19 N 50000 contig no
1867863 1944484 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 CR792450.4 1 76622 +
1944485 1994484 21 N 50000 contig no
1994485 2200046 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CR855367.8 1 205562 +
2200047 2250046 23 N 50000 contig no
2250047 2424034 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 BX072572.8 1 173988 +
2424035 2474034 25 N 50000 contig no
2474035 2699717 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 BX936454.25 1 225683 +
2699718 2806081 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 BX255947.6 41528 147891 +
2806082 2856081 28 N 50000 contig no
2856082 3024157 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CT583675.10 1 168076 +
3024158 3074157 30 N 50000 contig no
3074158 3262003 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 BX784034.8 1 187846 +
3262004 3312003 32 N 50000 contig no
3312004 3484239 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 BX470256.11 1 172236 +
3484240 3534239 34 N 50000 contig no
3534240 3757710 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CR759874.20 1 223471 +
3757711 3807710 36 N 50000 contig no
3807711 3995061 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CR788305.17 1 187351 +
3995062 4045061 38 N 50000 contig no
4045062 4292948 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 CR392340.11 1 247887 +
4292949 4342948 40 N 50000 contig no
4342949 4381456 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 CU459148.4 1 38508 +
4381457 4431456 42 N 50000 contig no
4431457 4612450 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 44 BX255909.5 1 180994 -
4612451 4730175 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 44 BX649302.22 36365 154089 +
4730176 4780175 45 N 50000 contig no
4780176 4957745 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 46 CR354422.7 1 177570 +
4957746 5007745 47 N 50000 contig no
5007746 5135227 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 48 CR407560.11 1 127482 +
5135228 5185227 49 N 50000 contig no
5185228 5385414 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 BX510327.10 1 200187 +
5385415 5435414 51 N 50000 contig no
5435415 5643630 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 CT583724.9 1 208216 +
5643631 5693630 53 N 50000 contig no
5693631 5849149 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX927255.9 1 155519 +
5849150 6032075 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 CR926887.9 2001 184926 +
6032076 6226507 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX936462.20 1 194432 -
6226508 6276507 57 N 50000 contig no
6276508 6368621 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 59 BX548244.5 1997 94110 -
6368622 6420552 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 59 BX927309.12 1 51931 +
6420553 6425552 60 N 5000 No overlap in database    
6425553 6628099 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 62 BX324115.8 1 202547 +
6628100 6718563 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 62 CR354391.7 2001 92464 +
6718564 6768563 63 N 50000 contig no
6768564 6954418 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 CR759734.3 1 185855 +
6954419 7004418 65 N 50000 contig no
7004419 7204404 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 BX545848.23 1 199986 +
7204405 7254404 67 N 50000 contig no
7254405 7390121 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 68 BX321868.13 1 135717 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
29
Gap types
type-3
29
Total clones
38
Clone HTGS Phases
finished
38
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
88,389
Total finished length of fin clones w/ overlap
6,023,008
Total finished length of fin clones w/o overlap
5,934,619
Total overlap length of fin+unfin clones
88,389
Total finished length of fin+unfin clones w/ overlap
6,023,008
Total finished length of fin+unfin clones w/o overlap
5,934,619

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Other links

* quick link - http://q.sanger.ac.uk/m51d19py