ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_19 (TPF updated: 2012-04-26)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH211-227L1
ctg1478
zC227L1
EPN details
AL935211.7
finished
  GAP (type-3) length unknown    
3 DKEY-269K12
ctg1889
zK269K12
EPN details
CR762485.16
finished
  GAP (type-3) length unknown    
5 CH211-62D7
ctg2995
zC62D7
EPN details
CR855268.9
finished
  GAP (type-3) length unknown    
7 DKEYP-84F11
ctg5002
zKp84F11
EPN details
BX890617.13
finished
  GAP (type-3) length unknown    
9 DKEY-27C15
ctg5007
zK27C15
EPN details
BX465837.11
finished
  GAP (type-3) length unknown    
11 DKEY-63J1
ctg5013
zK63J1
EPN details
BX511164.11
finished
  GAP (type-3) length unknown    
13 DKEY-179E8
ctg5019
zK179E8
EPN details
BX957299.8
finished
  GAP (type-3) length unknown    
15 DKEY-264N13
ctg5025
zK264N13
EPN details
BX927188.11
finished
  GAP (type-3) length unknown    
17 CH211-51F10
ctg5033
zC51F10
EPN details
BX510994.6
finished
  GAP (type-3) length unknown    
19 CH211-127D20
ctg5036
zC127D20
EPN details
BX469886.5
finished
  GAP (type-3) length unknown    
21 CH211-152P11
ctg5038
zC152P11
EPN details
BX511233.10
finished
  GAP (type-3) length unknown    
23 CH211-222E23
ctg5047
zC222E23
EPN details
BX537337.9
finished
  GAP (type-3) length unknown    
25 DKEY-189H6
ctg6311
zK189H6
EPN details
CT027799.12
finished
26 CH211-270K23
ctg6311
zC270K23
EPN details
BX957262.7
finished
  GAP (type-3) length unknown    
28 CH211-77K19
ctg6428
zC77K19
EPN details
BX005455.8
finished
29 CH211-262K23
ctg6428
zC262K23
EPN details
BX323007.11
finished
  GAP (type-3) length unknown    
31 DKEY-14J6
ctg6430
zK14J6
EPN details
AL974310.15
finished
  GAP (type-3) length unknown    
33 DKEYP-123A9
ctg6477
zKp123A9
EPN details
BX323806.15
finished
34 DKEY-22K18
ctg6477
zK22K18
EPN details
BX248241.20
finished
35 DKEY-174P10
ctg6477
zK174P10
EPN details
BX284622.3
finished
36 DKEY-192I20
ctg6477
zK192I20
EPN details
BX284616.13
finished
37 CH211-212B14
ctg6477
zC212B14
EPN details
BX276125.6
finished
38 DKEY-46K2
ctg6477
zK46K2
EPN details
BX005267.7
finished
39 CH211-134F7
ctg6477
zC134F7
EPN details
BX004837.9
finished
  GAP (type-3) length unknown    
41 RP71-15A9
ctg6523
bZ15A9
EPN details
CR762418.5
finished
  GAP (type-3) length unknown    
43 DKEY-95L14
ctg6713
zK95L14
EPN details
CR318609.7
finished
44 DKEY-173N20
ctg6713
zK173N20
EPN details
BX957239.7
finished
45 CH211-176A18
ctg6713
zC176A18
EPN details
CT573199.4
finished
46 DKEY-30F7
ctg6713
zK30F7
EPN details
CR933822.8
finished
47 CH211-81E5
ctg6713
zC81E5
EPN details
BX511258.6
finished
48 CH211-195L15
ctg6713
zC195L15
EPN details
BX572629.8
finished
49 CH211-158I11
ctg6713
zC158I11
EPN details
BX950173.7
finished
50 CH211-285O8
ctg6713
zC285O8
EPN details
BX957323.7
finished
51 DKEY-22I11
ctg6713
zK22I11
EPN details
BX957237.11
finished
52 CH211-210B19
ctg6713
zC210B19
EPN details
BX000986.4
finished
  GAP (type-3) length unknown    
54 CH211-123D3
ctg6756
zC123D3
EPN details
BX511074.10
finished
55 CH211-143E20
ctg6756
zC143E20
EPN details
BX511014.4
finished
  GAP (type-3) length unknown    
57 RP71-18L21
ctg2708_1
bZ18L21
EPN details
CR847882.13
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 152485 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL935211.7 1 152485 +
152486 202485 2 N 50000 contig no
202486 373710 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR762485.16 1 171225 +
373711 423710 4 N 50000 contig no
423711 594540 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CR855268.9 1 170830 +
594541 644540 6 N 50000 contig no
644541 826722 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX890617.13 1 182182 +
826723 876722 8 N 50000 contig no
876723 1082876 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 BX465837.11 1 206154 +
1082877 1132876 10 N 50000 contig no
1132877 1346877 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 BX511164.11 1 214001 +
1346878 1396877 12 N 50000 contig no
1396878 1564894 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 BX957299.8 1 168017 +
1564895 1614894 14 N 50000 contig no
1614895 1778107 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 BX927188.11 1 163213 +
1778108 1828107 16 N 50000 contig no
1828108 2015080 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 BX510994.6 1 186973 +
2015081 2065080 18 N 50000 contig no
2065081 2216678 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 BX469886.5 1 151598 +
2216679 2266678 20 N 50000 contig no
2266679 2460599 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 BX511233.10 1 193921 +
2460600 2510599 22 N 50000 contig no
2510600 2727974 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 BX537337.9 1 217375 +
2727975 2777974 24 N 50000 contig no
2777975 2819549 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 26 CT027799.12 1 41575 -
2819550 2961361 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 26 BX957262.7 2001 143812 +
2961362 3011361 27 N 50000 contig no
3011362 3176102 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 BX005455.8 1 164741 +
3176103 3304909 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 BX323007.11 2001 130807 +
3304910 3354909 30 N 50000 contig no
3354910 3538773 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 AL974310.15 1 183864 +
3538774 3588773 32 N 50000 contig no
3588774 3719195 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX323806.15 2006 132427 -
3719196 3818790 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX248241.20 2001 101595 -
3818791 3943241 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX284622.3 2001 126451 -
3943242 4164814 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX284616.13 2001 223573 -
4164815 4217244 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX276125.6 2001 54430 -
4217245 4319279 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX005267.7 2001 104035 -
4319280 4507604 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 39 BX004837.9 1 188325 -
4507605 4557604 40 N 50000 contig no
4557605 4705485 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 CR762418.5 1 147881 +
4705486 4755485 42 N 50000 contig no
4755486 4831450 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 CR318609.7 1 75965 +
4831451 5011882 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX957239.7 2001 182432 +
5011883 5013876 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 CT573199.4 2001 3994 +
5013877 5199253 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 CR933822.8 2001 187377 +
5199254 5397329 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX511258.6 2001 200076 +
5397330 5566300 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX572629.8 2001 170971 +
5566301 5632928 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX950173.7 2001 68628 +
5632929 5738090 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX957323.7 2001 107162 +
5738091 5809386 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX957237.11 2001 73296 +
5809387 5958887 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 52 BX000986.4 1 149501 -
5958888 6008887 53 N 50000 contig no
6008888 6095941 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 55 BX511074.10 1 87054 -
6095942 6248802 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 55 BX511014.4 1 152861 -
6248803 6298802 56 N 50000 contig no
6298803 6447869 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 CR847882.13 1 149067 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-227L1
ctg1478
zC227L1
EPN details
Analysed
04-SEP-03
AL935211.7
finished
152485 CHORI-211        
  GAP (type-3) length unknown                  
3 DKEY-269K12
ctg1889
zK269K12
EPN details
Analysed
16-SEP-06
CR762485.16
finished
171225 DanioKey        
  GAP (type-3) length unknown                  
5 CH211-62D7
ctg2995
zC62D7
EPN details
Analysed
28-SEP-06
CR855268.9
finished
170830 CHORI-211        
  GAP (type-3) length unknown                  
7 DKEYP-84F11
ctg5002
zKp84F11
EPN details
Submitted to EMBL
12-JAN-09
BX890617.13
finished
182182 DanioKeypilot        
  GAP (type-3) length unknown                  
9 DKEY-27C15
ctg5007
zK27C15
EPN details
Submitted to EMBL
12-JAN-09
BX465837.11
finished
206154 DanioKey        
  GAP (type-3) length unknown                  
11 DKEY-63J1
ctg5013
zK63J1
EPN details
Submitted to EMBL
12-JAN-09
BX511164.11
finished
214001 DanioKey        
  GAP (type-3) length unknown                  
13 DKEY-179E8
ctg5019
zK179E8
EPN details
Submitted to EMBL
12-JAN-09
BX957299.8
finished
168017 DanioKey        
  GAP (type-3) length unknown                  
15 DKEY-264N13
ctg5025
zK264N13
EPN details
Submitted to EMBL
12-JAN-09
BX927188.11
finished
163213 DanioKey        
  GAP (type-3) length unknown                  
17 CH211-51F10
ctg5033
zC51F10
EPN details
Submitted to EMBL
12-JAN-09
BX510994.6
finished
186973 CHORI-211        
  GAP (type-3) length unknown                  
19 CH211-127D20
ctg5036
zC127D20
EPN details
Submitted to EMBL
12-JAN-09
BX469886.5
finished
151598 CHORI-211        
  GAP (type-3) length unknown                  
21 CH211-152P11
ctg5038
zC152P11
EPN details
Submitted to EMBL
12-JAN-09
BX511233.10
finished
193921 CHORI-211        
  GAP (type-3) length unknown                  
23 CH211-222E23
ctg5047
zC222E23
EPN details
Submitted to EMBL
12-JAN-09
BX537337.9
finished
217375 CHORI-211        
  GAP (type-3) length unknown                  
25 DKEY-189H6
ctg6311
zK189H6
EPN details
Analysed
10-JUN-06
CT027799.12
finished
41575 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2006-06-11
find_overl...
badger
 
26 CH211-270K23
ctg6311
zC270K23
EPN details
Submitted to EMBL
12-JAN-09
BX957262.7
finished
143812 CHORI-211        
  GAP (type-3) length unknown                  
28 CH211-77K19
ctg6428
zC77K19
EPN details
Submitted to EMBL
12-JAN-09
BX005455.8
finished
164741 CHORI-211 3' / 5'
164741 / 2001
- / -
2000
0
Identified
2004-05-01
find_overl...
badger
 
29 CH211-262K23
ctg6428
zC262K23
EPN details
Submitted to EMBL
12-JAN-09
BX323007.11
finished
130807 CHORI-211        
  GAP (type-3) length unknown                  
31 DKEY-14J6
ctg6430
zK14J6
EPN details
Analysed
03-NOV-03
AL974310.15
finished
183864 DanioKey        
  GAP (type-3) length unknown                  
33 DKEYP-123A9
ctg6477
zKp123A9
EPN details
Analysed
15-APR-04
BX323806.15
finished
132427 DanioKeypilot 5' / 3'
2006 / 101595
- / -
2005
0
Identified
2005-01-15
find_overl...
badger
 
34 DKEY-22K18
ctg6477
zK22K18
EPN details
Analysed
01-FEB-05
BX248241.20
finished
101595 DanioKey 5' / 3'
2001 / 126451
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
35 DKEY-174P10
ctg6477
zK174P10
EPN details
Analysed
17-FEB-04
BX284622.3
finished
126451 DanioKey 5' / 3'
2001 / 223573
- / -
2000
0
Identified
2004-03-19
find_overl...
badger
 
36 DKEY-192I20
ctg6477
zK192I20
EPN details
Analysed
17-MAR-04
BX284616.13
finished
223573 DanioKey 5' / 3'
2001 / 54430
- / -
2000
0
Identified
2004-03-19
find_overl...
badger
 
37 CH211-212B14
ctg6477
zC212B14
EPN details
Analysed
21-FEB-04
BX276125.6
finished
54430 CHORI-211 5' / 3'
2001 / 104035
- / -
2000
0
Identified
2003-12-13
find_overl...
badger
 
38 DKEY-46K2
ctg6477
zK46K2
EPN details
Analysed
04-OCT-03
BX005267.7
finished
104035 DanioKey 5' / 3'
2001 / 188325
- / -
2000
0
Identified
2003-09-26
find_overl...
badger
 
39 CH211-134F7
ctg6477
zC134F7
EPN details
Analysed
29-JAN-04
BX004837.9
finished
188325 CHORI-211        
  GAP (type-3) length unknown                  
41 RP71-15A9
ctg6523
bZ15A9
EPN details
Analysed
18-DEC-04
CR762418.5
finished
147881 RPCI-71        
  GAP (type-3) length unknown                  
43 DKEY-95L14
ctg6713
zK95L14
EPN details
Analysed
09-SEP-05
CR318609.7
finished
75965 DanioKey 3' / 5'
75965 / 2001
- / -
2000
0
Identified
2005-09-15
find_overl...
badger
 
44 DKEY-173N20
ctg6713
zK173N20
EPN details
Analysed
21-DEC-04
BX957239.7
finished
182432 DanioKey 3' / 5'
182432 / 2001
- / -
2000
0
Identified
2006-06-09
find_overl...
badger
 
45 CH211-176A18
ctg6713
zC176A18
EPN details
Analysed
09-JUN-06
CT573199.4
finished
3994 CHORI-211 3' / 5'
3994 / 2001
- / -
2000
0
Identified
2006-06-09
find_overl...
badger
 
46 DKEY-30F7
ctg6713
zK30F7
EPN details
Analysed
19-JUL-05
CR933822.8
finished
187377 DanioKey 3' / 5'
187377 / 2001
- / -
2000
0
Identified
2005-05-14
find_overl...
badger
 
47 CH211-81E5
ctg6713
zC81E5
EPN details
Submitted to EMBL
05-JUN-07
BX511258.6
finished
200076 CHORI-211 3' / 5'
200076 / 2001
- / -
2000
0
Identified
2004-03-19
find_overl...
badger
 
48 CH211-195L15
ctg6713
zC195L15
EPN details
Submitted to EMBL
05-JUN-07
BX572629.8
finished
170971 CHORI-211 3' / 5'
170971 / 2001
- / -
2000
0
Identified
2004-09-25
find_overl...
badger
 
49 CH211-158I11
ctg6713
zC158I11
EPN details
Submitted to EMBL
05-JUN-07
BX950173.7
finished
68628 CHORI-211 3' / 5'
68628 / 2001
- / -
2000
0
Identified
2004-10-09
find_overl...
badger
 
50 CH211-285O8
ctg6713
zC285O8
EPN details
Submitted to EMBL
05-JUN-07
BX957323.7
finished
107162 CHORI-211 3' / 5'
107162 / 2001
- / -
2000
0.05
Identified
2005-02-25
find_overl...
badger
 
51 DKEY-22I11
ctg6713
zK22I11
EPN details
Submitted to EMBL
05-JUN-07
BX957237.11
finished
73296 DanioKey 3' / 3'
73296 / 149501
- / -
2000
0
Identified
2005-02-25
find_overl...
badger
 
52 CH211-210B19
ctg6713
zC210B19
EPN details
Submitted to EMBL
05-JUN-07
BX000986.4
finished
151501 CHORI-211        
  GAP (type-3) length unknown                  
54 CH211-123D3
ctg6756
zC123D3
EPN details
Analysed
23-NOV-05
BX511074.10
finished
87054 CHORI-211 5' / 3'
1 / 152861
- / -
2000
0
Identified
2005-11-23
find_overl...
badger
 
55 CH211-143E20
ctg6756
zC143E20
EPN details
Analysed
17-MAR-04
BX511014.4
finished
154861 CHORI-211        
  GAP (type-3) length unknown                  
57 RP71-18L21
ctg2708_1
bZ18L21
EPN details
Submitted to EMBL
12-JAN-09
CR847882.13
finished
149067 RPCI-71        

Statistics

Clone Summary

Number of gaps
19
Gap types
type-3
19
Total clones
38
Clone HTGS Phases
finished
38
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
36,005
Total finished length of fin clones w/ overlap
5,533,874
Total finished length of fin clones w/o overlap
5,497,869
Total overlap length of fin+unfin clones
36,005
Total finished length of fin+unfin clones w/ overlap
5,533,874
Total finished length of fin+unfin clones w/o overlap
5,497,869

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Other links

* quick link - http://q.sanger.ac.uk/mawf7ktc