ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_18 (TPF updated: 2013-05-21)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-128O18
ctg1096
zC128O18
CR318652.16
finished
  GAP (type-3) length unknown    
3 DKEY-35H2
ctg1550
zK35H2
CR854821.13
finished
  GAP (type-3) length unknown    
5 ZFOS-900A7
ctg1754
zF900A7
CT476807.4
finished
  GAP (type-3) length unknown    
7 DKEY-77F3
ctg1756
zK77F3
BX571975.7
finished
8 CH211-286F6
ctg1756
zC286F6
BX548052.7
finished
9 DKEY-7P3
ctg1756
zK7P3
BX927295.6
finished
10 DKEY-16F19
ctg1756
zK16F19
BX088714.18
finished
11 CH211-273N7
ctg1756
zC273N7
BX548245.14
finished
12 DKEY-156P3
ctg1756
zK156P3
BX469889.7
finished
13 DKEY-5N1
ctg1756
zK5N1
BX927113.12
finished
14 RP71-1M22
ctg1756
bZ1M22
CT573340.5
finished
15 DKEY-244F16
ctg1756
zK244F16
BX544871.4
finished
16 CH211-245M11
ctg1756
zC245M11
BX936387.9
finished
  GAP (type-3) length unknown    
18 CH211-234N7
ctg1757
zC234N7
BX663494.4
finished
19 CH211-265B3
ctg1757
zC265B3
BX927199.5
finished
20 CH211-227N17
ctg1757
zC227N17
CT027651.10
finished
21 CH211-163B1
ctg1757
zC163B1
CT025908.13
finished
  GAP (type-3) length unknown    
23 DKEYP-86F2
ctg1759
zKp86F2
BX640480.22
finished
24 CH211-247G19
ctg1759
zC247G19
CR788299.4
finished
25 DKEY-238C7
ctg1759
zK238C7
BX571879.8
finished
26 DKEY-115J5
ctg1759
zK115J5
BX323447.11
finished
  GAP (type-3) length unknown    
28 DKEY-194N10
ctg1762
zK194N10
BX914221.6
finished
29 DKEY-56M6
ctg1762
zK56M6
BX908761.10
finished
30 CH211-239J19
ctg1762
zC239J19
BX784024.10
finished
31 DKEY-21M4
ctg1762
zK21M4
BX936396.13
finished
32 DKEY-151P17
ctg1762
zK151P17
BX571883.3
finished
33 CH211-181H11
ctg1762
zC181H11
BX548058.9
finished
34 RP71-25N17
ctg1762
bZ25N17
BX914216.14
finished
35 CH211-211A20
ctg1762
zC211A20
BX088690.9
finished
36 CH211-242M18
ctg1762
zC242M18
BX927065.8
finished
  GAP (type-3) length unknown    
38 CH211-173L10
ctg1763
zC173L10
BX005458.19
finished
  GAP (type-3) length unknown    
40 CH211-171A1
ctg1765
zC171A1
CR855335.5
finished
41 CH211-222L23
ctg1765
zC222L23
BX942820.8
finished
42 DKEY-155M6
ctg1765
zK155M6
BX901978.14
finished
  GAP (type-3) length unknown    
44 CH211-200M10
ctg1767
zC200M10
BX537324.13
finished
  GAP (type-3) length unknown    
46 CH211-113C15
ctg1770
zC113C15
BX908390.7
finished
47 CH211-249G22
ctg1770
zC249G22
BX255955.3
finished
48 CH211-117P19
ctg1770
zC117P19
CT025924.9
finished
49 CH211-140G2
ctg1770
zC140G2
BX901876.11
finished
  GAP (type-3) length unknown    
51 DKEY-57M7
ctg1773
zK57M7
CR293524.10
finished
52 DKEY-3H18
ctg1773
zK3H18
AL935315.3
finished
  GAP (type-3) length unknown    
54 DKEY-3J22
ctg1776
zK3J22
AL844883.15
finished
  GAP (type-3) length unknown    
56 DKEY-286O23
ctg1778
zK286O23
BX927071.12
finished
57 DKEY-263N17
ctg1778
zK263N17
CR354427.7
finished
  GAP (type-3) length unknown    
59 CH211-238A12
ctg1782
zC238A12
CR381668.8
finished
60 CH211-165K16
ctg1782
zC165K16
CR759881.16
finished
  GAP (type-3) length unknown    
62 DKEY-262M23
ctg1785
zK262M23
BX927103.12
finished
  GAP (type-2) length unknown    
64 DKEY-60P1
ctg1785
zK60P1
CR388409.5
finished
  GAP (type-3) length unknown    
66 DKEY-207D5
ctg1787
zK207D5
CR318631.5
finished
67 DKEY-66C4
ctg1787
zK66C4
BX000347.7
finished
  GAP (type-3) length unknown    
69 CH211-196M2
ctg1791
zC196M2
BX323598.9
finished
70 DKEY-164P1
ctg1791
zK164P1
BX470143.8
finished
71 CH211-59N3
ctg1791
zC59N3
AL929595.5
finished
72 DKEY-38L12
ctg1791
zK38L12
BX005041.11
finished
73 DKEYP-72E5
ctg1791
zKp72E5
CR925806.6
finished
74 DKEY-207H9
ctg1791
zK207H9
BX908772.11
finished
75 DKEY-82I13
ctg1791
zK82I13
BX927110.10
finished
76 DKEYP-40F4
ctg1791
zKp40F4
BX927097.11
finished
77 CH211-214P12
ctg1791
zC214P12
BX649598.17
finished
78 DKEY-74A12
ctg1791
zK74A12
CR628362.8
finished
  GAP (type-3) length unknown    
80 CH211-283J22
ctg1794
zC283J22
BX470202.7
finished
81 CH211-1A22
ctg1794
zC1A22
BX649586.4
finished
82 DKEY-222H18
ctg1794
zK222H18
BX072575.6
finished
  GAP (type-3) length unknown    
84 DKEY-16N13
ctg1796
zK16N13
BX927240.11
finished
85 CH211-20O10
ctg1796
zC20O10
CR854950.9
finished
86 CH73-160I11
ctg1796
zH160I11
CT573113.6
finished
  GAP (type-3) length unknown    
88 DKEY-172K9
ctg1798
zK172K9
BX927127.9
finished
89 DKEY-277C13
ctg1798
zK277C13
AL845284.4
finished
  GAP (type-3) length unknown    
91 DKEY-168I4
ctg1799
zK168I4
CR450724.10
finished
  GAP (type-3) length unknown    
93 CH211-112C12
ctg1800
zC112C12
BX247903.20
finished
  GAP (type-3) length unknown    
95 CH211-203L24
ctg1806
zC203L24
CT573141.19
finished
  GAP (type-3) length unknown    
97 DKEY-150H10
ctg1815
zK150H10
CR759813.6
finished
98 DKEY-26I16
ctg1815
zK26I16
CT025892.19
finished
99 CH211-248P16
ctg1815
zC248P16
CR388063.9
finished
100 CH211-113E18
ctg1815
zC113E18
BX914204.20
finished
101 CH211-105P7
ctg1815
zC105P7
BX914212.8
finished
  GAP (type-3) length unknown    
103 DKEYP-12B2
ctg1821
zKp12B2
CR925766.2
finished
104 CH211-232P17
ctg1821
zC232P17
BX255879.6
finished
105 CH211-283J23
ctg1821
zC283J23
BX901975.18
finished
106 CH211-209H17
ctg1821
zC209H17
BX119905.13
finished
  GAP (type-3) length unknown    
108 CH211-170L6
ctg1825
zC170L6
BX914195.11
finished
109 CH211-11F20
ctg1825
zC11F20
BX936328.7
finished
110 DKEY-239K7
ctg1825
zK239K7
BX470100.6
finished
111 CH211-91P22
ctg1825
zC91P22
BX470181.7
finished
112 CH211-194I18
ctg1825
zC194I18
BX469892.6
finished
113 DKEY-195H23
ctg1825
zK195H23
BX005322.8
finished
  GAP (type-3) length unknown    
115 DKEY-79N12
ctg1827
zK79N12
BX005312.20
finished
116 DKEY-224H10
ctg1827
zK224H10
BX957233.8
finished
  GAP (type-3) length unknown    
118 DKEY-266J11
ctg1830
zK266J11
BX571831.7
finished
  GAP (type-3) length unknown    
120 CH211-206G24
ctg1831
zC206G24
BX936304.7
finished
  GAP (type-3) length unknown    
122 CH211-14C7
ctg1833
zC14C7
BX908724.8
finished
123 DKEY-99O15
ctg1833
zK99O15
BX470257.13
finished
  GAP (type-3) length unknown    
125 DKEY-113G17
ctg2123
zK113G17
AL928979.4
finished
  GAP (type-3) length unknown    
127 CH211-225P16
ctg2395
zC225P16
BX247864.10
finished
  GAP (type-3) length unknown    
129 CH211-80D23
ctg2484
zC80D23
BX927109.13
finished
130 DKEYP-91C12
ctg2484
zKp91C12
CT573211.15
finished
131 DKEY-28F16
ctg2484
zK28F16
BX927197.7
finished
  GAP (type-3) length unknown    
133 CH211-274N1
ctg2524
zC274N1
CR847946.7
finished
  GAP (type-3) length unknown    
135 CH211-178L23
ctg2589
zC178L23
CR759819.7
finished
  GAP (type-3) length unknown    
137 CH211-270A9
ctg2599
zC270A9
BX248105.5
finished
  GAP (type-3) length unknown    
139 CH211-181P1
ctg2680
zC181P1
CR762425.5
finished
140 CH73-31N19
ctg2680
zH31N19
CT573116.5
finished
  GAP (type-3) length unknown    
142 DKEYP-85H10
ctg2733
zKp85H10
CT737194.9
finished
  GAP (type-3) length unknown    
144 DKEY-25K11
ctg2799
zK25K11
CT967325.1
finished
  GAP (type-3) length unknown    
146 DKEY-246O14
ctg2809
zK246O14
BX769174.7
finished
  GAP (type-3) length unknown    
148 CH211-203B20
ctg2833
zC203B20
BX005113.4
finished
  GAP (type-3) length unknown    
150 DKEYP-82D11
ctg2839
zKp82D11
BX649426.8
finished
  GAP (type-3) length unknown    
152 DKEY-219M7
ctg2928
zK219M7
CU182082.8
finished
  GAP (type-3) length unknown    
154 CH211-261H11
ctg3307
zC261H11
CR847924.7
finished
  GAP (type-3) length unknown    
156 RP71-39A17
ctg3506
bZ39A17
BX546485.12
finished
  GAP (type-3) length unknown    
158 CH211-283G6
ctg6043
zC283G6
CR407586.6
finished
  GAP (type-3) length unknown    
160 CH211-167C22
ctg6044
zC167C22
AL845366.6
finished
161 CH211-222O13
ctg6044
zC222O13
BX511251.16
finished
  GAP (type-3) length unknown    
163 CH211-256D22
ctg6087
zC256D22
CU207216.6
finished
  GAP (type-3) length unknown    
165 CH211-82K12
ctg6202
zC82K12
BX936376.6
finished
166 CH211-233H19
ctg6202
zC233H19
BX248397.8
finished
167 DKEY-205F6
ctg6202
zK205F6
BX957229.8
finished
168 CH211-184L6
ctg6202
zC184L6
BX119988.9
finished
169 CH211-251L7
ctg6202
zC251L7
AL935318.6
finished
170 DKEY-52I22
ctg6202
zK52I22
BX470186.11
finished
171 CH211-59C17
ctg6202
zC59C17
BX470142.4
finished
172 DKEY-180H12
ctg6202
zK180H12
BX469898.9
finished
  GAP (type-3) length unknown    
174 DKEY-176K10
ctg6243
zK176K10
CU326365.10
finished
  GAP (type-3) length unknown    
176 DKEY-118G2
ctg6268
zK118G2
CU302305.10
finished
  GAP (type-3) length unknown    
178 DKEY-221N16
ctg6489
zK221N16
CR385047.19
finished
  GAP (type-3) length unknown    
180 DKEY-196D8
ctg6546
zK196D8
BX908754.8
finished
181 CH211-276P10
ctg6546
zC276P10
BX572633.7
finished
182 DKEY-68I6
ctg6546
zK68I6
BX005289.15
finished
183 DKEY-245O11
ctg6546
zK245O11
BX572646.11
finished
184 DKEY-227K11
ctg6546
zK227K11
BX571971.4
finished
185 DKEY-174I19
ctg6546
zK174I19
BX571976.11
finished
186 DKEY-264L19
ctg6546
zK264L19
BX571844.6
finished
187 DKEY-28N22
ctg6546
zK28N22
CR318642.8
finished
188 CH211-136J9
ctg6546
zC136J9
BX649642.7
finished
  GAP (type-3) length unknown    
190 DKEYP-86E4
ctg6578
zKp86E4
CR450733.7
finished
  GAP (type-3) length unknown    
192 CH211-241L24
ctg6606
zC241L24
BX927076.9
finished
  GAP (type-3) length unknown    
194 CH211-150E10
ctg6667
zC150E10
CR352298.10
finished
195 DKEY-48N1
ctg6667
zK48N1
CR847802.11
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 179522 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR318652.16 1 179522 +
179523 229522 2 N 50000 contig no
229523 387021 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR854821.13 1 157499 +
387022 437021 4 N 50000 contig no
437022 440651 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CT476807.4 1 3630 +
440652 490651 6 N 50000 contig no
490652 675923 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX571975.7 2001 187272 -
675924 820333 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX548052.7 2001 146410 -
820334 889408 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX927295.6 2001 71075 -
889409 1054556 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX088714.18 2001 167148 -
1054557 1232494 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX548245.14 1 177938 +
1232495 1408469 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX469889.7 2001 177975 -
1408470 1567539 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX927113.12 1 159070 -
1567540 1595882 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 CT573340.5 2001 30343 +
1595883 1795318 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX544871.4 2001 201436 +
1795319 1866538 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 16 BX936387.9 1 71220 -
1866539 1916538 17 N 50000 contig no
1916539 2066903 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 BX663494.4 1 150365 +
2066904 2147966 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 BX927199.5 2001 83063 +
2147967 2151960 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CT027651.10 1 3994 +
2151961 2326229 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CT025908.13 2001 176269 +
2326230 2376229 22 N 50000 contig no
2376230 2562487 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 BX640480.22 1 186258 +
2562488 2581131 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 CR788299.4 2001 20644 +
2581132 2831330 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 BX571879.8 1 250199 -
2831331 2857126 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 26 BX323447.11 2001 27796 +
2857127 2907126 27 N 50000 contig no
2907127 2966611 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 BX914221.6 1 59485 +
2966612 3011649 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 BX908761.10 2001 47038 +
3011650 3016649 30 N 5000 No overlap in database    
3016650 3127440 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 BX784024.10 1 110791 +
3127441 3132440 32 N 5000 No overlap in database    
3132441 3159982 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 38 BX936396.13 1 27542 +
3159983 3411154 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 38 BX571883.3 1 251172 -
3411155 3504493 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 38 BX548058.9 2001 95339 +
3504494 3573407 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 38 BX914216.14 2001 70914 +
3573408 3792120 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 38 BX088690.9 1 218713 -
3792121 3848230 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 38 BX927065.8 2001 58110 +
3848231 3898230 39 N 50000 contig no
3898231 4038519 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 BX005458.19 1 140289 +
4038520 4088519 41 N 50000 contig no
4088520 4139644 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 CR855335.5 1 51125 +
4139645 4251992 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 BX942820.8 1947 114294 +
4251993 4418093 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 44 BX901978.14 2001 168101 +
4418094 4468093 45 N 50000 contig no
4468094 4613501 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 46 BX537324.13 1 145408 +
4613502 4663501 47 N 50000 contig no
4663502 4695177 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 48 BX908390.7 1 31676 +
4695178 4841282 49 F BX255955.3
Double 5-prime join to 'BX255955.3'
1 146105 -
4841283 4846282 50 N 5000 Bad overlap - double 5 prime join    
4846283 4933546 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 CT025924.9 2001 89264 +
4933547 5087359 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 BX901876.11 2001 155813 +
5087360 5137359 53 N 50000 contig no
5137360 5254794 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 55 CR293524.10 72762 190196 -
5254795 5280800 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 55 AL935315.3 1 26006 -
5280801 5330800 56 N 50000 contig no
5330801 5520784 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 AL844883.15 1 189984 +
5520785 5570784 58 N 50000 contig no
5570785 5712697 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 60 BX927071.12 1 141913 +
5712698 5877455 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 60 CR354427.7 1 164758 -
5877456 5927455 61 N 50000 contig no
5927456 6082683 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 63 CR381668.8 1 155228 -
6082684 6204083 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 63 CR759881.16 1 121400 -
6204084 6254083 64 N 50000 contig no
6254084 6439091 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 BX927103.12 1 185008 +
6439092 6489091 66 N 50000 contig yes
6489092 6530033 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 67 CR388409.5 1 40942 +
6530034 6580033 68 N 50000 contig no
6580034 6604892 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 70 CR318631.5 164853 189711 -
6604893 6760605 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 70 BX000347.7 1 155713 -
6760606 6810605 71 N 50000 contig no
6810606 7007934 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX323598.9 1 197329 +
7007935 7068913 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX470143.8 2001 62979 +
7068914 7171161 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 AL929595.5 2001 104248 +
7171162 7362014 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX005041.11 1 190853 -
7362015 7379537 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 CR925806.6 2001 19523 +
7379538 7551338 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX908772.11 2001 173801 +
7551339 7576391 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX927110.10 2001 27053 +
7576392 7671895 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX927097.11 2001 97504 +
7671896 7883636 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 BX649598.17 1 211741 -
7883637 8082368 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 81 CR628362.8 2001 200732 +
8082369 8132368 82 N 50000 contig no
8132369 8265778 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 BX470202.7 1 133410 +
8265779 8392529 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 BX649586.4 2001 128751 +
8392530 8567813 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 85 BX072575.6 1 175284 -
8567814 8617813 86 N 50000 contig no
8617814 8881428 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 88 BX927240.11 1 263615 +
8881429 8915637 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 88 CR854950.9 2001 36209 +
8915638 8920637 89 N 5000 No overlap in database    
8920638 8995624 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 90 CT573113.6 1 74987 +
8995625 9045624 91 N 50000 contig no
9045625 9167280 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 93 BX927127.9 1 121656 +
9167281 9391448 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 93 AL845284.4 2001 226168 +
9391449 9441448 94 N 50000 contig no
9441449 9639013 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 CR450724.10 1 197565 +
9639014 9689013 96 N 50000 contig no
9689014 9877872 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 BX247903.20 1 188859 +
9877873 9927872 98 N 50000 contig no
9927873 10094827 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 CT573141.19 1 166955 +
10094828 10144827 100 N 50000 contig no
10144828 10297729 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 105 CR759813.6 1 152902 +
10297730 10458498 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 105 CT025892.19 2001 162769 +
10458499 10596693 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 105 CR388063.9 1925 140119 +
10596694 10766062 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 105 BX914204.20 1 169369 -
10766063 10832002 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 105 BX914212.8 2001 67940 +
10832003 10882002 106 N 50000 contig no
10882003 10911074 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 CR925766.2 1 29072 +
10911075 11082827 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 BX255879.6 2 171754 -
11082828 11186053 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 109 BX901975.18 2001 105226 +
11186054 11191053 110 N 5000 No overlap in database    
11191054 11241419 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 111 BX119905.13 1 50366 +
11241420 11291419 112 N 50000 contig no
11291420 11448110 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 113 BX914195.11 1 156691 +
11448111 11453110 114 N 5000 No overlap in database    
11453111 11566148 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 117 BX936328.7 1 113038 +
11566149 11679452 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 117 BX470100.6 2001 115304 -
11679453 11865536 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 117 BX470181.7 1 186084 -
11865537 11870536 118 N 5000 No overlap in database    
11870537 11919101 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 120 BX469892.6 1 48565 +
11919102 11982367 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 120 BX005322.8 2001 65266 +
11982368 12032367 121 N 50000 contig no
12032368 12237866 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 123 BX005312.20 1 205499 +
12237867 12306750 123 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 123 BX957233.8 1 68884 +
12306751 12356750 124 N 50000 contig no
12356751 12552322 125 FClick to retrieve finished assembled sequence in green bar: rank(s) 125 - 125 BX571831.7 1 195572 +
12552323 12602322 126 N 50000 contig no
12602323 12769627 127 FClick to retrieve finished assembled sequence in green bar: rank(s) 127 - 127 BX936304.7 1 167305 +
12769628 12819627 128 N 50000 contig no
12819628 13000664 129 FClick to retrieve finished assembled sequence in green bar: rank(s) 129 - 130 BX908724.8 1 181037 -
13000665 13079253 130 FClick to retrieve finished assembled sequence in green bar: rank(s) 129 - 130 BX470257.13 2001 80589 +
13079254 13129253 131 N 50000 contig no
13129254 13322458 132 FClick to retrieve finished assembled sequence in green bar: rank(s) 132 - 132 AL928979.4 1 193205 +
13322459 13372458 133 N 50000 contig no
13372459 13581216 134 FClick to retrieve finished assembled sequence in green bar: rank(s) 134 - 134 BX247864.10 1 208758 +
13581217 13631216 135 N 50000 contig no
13631217 13801000 136 FClick to retrieve finished assembled sequence in green bar: rank(s) 136 - 138 BX927109.13 1 169784 -
13801001 13880362 137 FClick to retrieve finished assembled sequence in green bar: rank(s) 136 - 138 CT573211.15 2001 81362 +
13880363 13948873 138 FClick to retrieve finished assembled sequence in green bar: rank(s) 136 - 138 BX927197.7 2001 70511 +
13948874 13998873 139 N 50000 contig no
13998874 14147873 140 FClick to retrieve finished assembled sequence in green bar: rank(s) 140 - 140 CR847946.7 1 149000 +
14147874 14197873 141 N 50000 contig no
14197874 14316185 142 FClick to retrieve finished assembled sequence in green bar: rank(s) 142 - 142 CR759819.7 1 118312 +
14316186 14366185 143 N 50000 contig no
14366186 14524858 144 FClick to retrieve finished assembled sequence in green bar: rank(s) 144 - 144 BX248105.5 1 158673 +
14524859 14574858 145 N 50000 contig no
14574859 14720326 146 FClick to retrieve finished assembled sequence in green bar: rank(s) 146 - 147 CR762425.5 1 145468 +
14720327 14850209 147 FClick to retrieve finished assembled sequence in green bar: rank(s) 146 - 147 CT573116.5 2001 131883 +
14850210 14900209 148 N 50000 contig no
14900210 15090470 149 FClick to retrieve finished assembled sequence in green bar: rank(s) 149 - 149 CT737194.9 1 190261 +
15090471 15140470 150 N 50000 contig no
15140471 15408296 151 FClick to retrieve finished assembled sequence in green bar: rank(s) 151 - 151 CT967325.1 1 267826 +
15408297 15458296 152 N 50000 contig no
15458297 15645841 153 FClick to retrieve finished assembled sequence in green bar: rank(s) 153 - 153 BX769174.7 1 187545 +
15645842 15695841 154 N 50000 contig no
15695842 15887626 155 FClick to retrieve finished assembled sequence in green bar: rank(s) 155 - 155 BX005113.4 1 191785 +
15887627 15937626 156 N 50000 contig no
15937627 16146966 157 FClick to retrieve finished assembled sequence in green bar: rank(s) 157 - 157 BX649426.8 1 209340 +
16146967 16196966 158 N 50000 contig no
16196967 16357809 159 FClick to retrieve finished assembled sequence in green bar: rank(s) 159 - 159 CU182082.8 1 160843 +
16357810 16407809 160 N 50000 contig no
16407810 16557897 161 FClick to retrieve finished assembled sequence in green bar: rank(s) 161 - 161 CR847924.7 1 150088 +
16557898 16607897 162 N 50000 contig no
16607898 16761229 163 FClick to retrieve finished assembled sequence in green bar: rank(s) 163 - 163 BX546485.12 1 153332 +
16761230 16811229 164 N 50000 contig no
16811230 16945825 165 FClick to retrieve finished assembled sequence in green bar: rank(s) 165 - 165 CR407586.6 1 134596 +
16945826 16995825 166 N 50000 contig no
16995826 17143014 167 FClick to retrieve finished assembled sequence in green bar: rank(s) 167 - 168 AL845366.6 1 147189 +
17143015 17312264 168 FClick to retrieve finished assembled sequence in green bar: rank(s) 167 - 168 BX511251.16 1 169250 -
17312265 17362264 169 N 50000 contig no
17362265 17523640 170 FClick to retrieve finished assembled sequence in green bar: rank(s) 170 - 170 CU207216.6 1 161376 +
17523641 17573640 171 N 50000 contig no
17573641 17681376 172 FClick to retrieve finished assembled sequence in green bar: rank(s) 172 - 175 BX936376.6 1 107736 -
17681377 17840314 173 FClick to retrieve finished assembled sequence in green bar: rank(s) 172 - 175 BX248397.8 2001 160938 +
17840315 17842308 174 FClick to retrieve finished assembled sequence in green bar: rank(s) 172 - 175 BX957229.8 2001 3994 +
17842309 17982238 175 FClick to retrieve finished assembled sequence in green bar: rank(s) 172 - 175 BX119988.9 1 139930 -
17982239 17987238 176 N 5000 No overlap in database    
17987239 18161957 177 FClick to retrieve finished assembled sequence in green bar: rank(s) 177 - 179 AL935318.6 1 174719 +
18161958 18291046 178 FClick to retrieve finished assembled sequence in green bar: rank(s) 177 - 179 BX470186.11 2001 131089 -
18291047 18349335 179 FClick to retrieve finished assembled sequence in green bar: rank(s) 177 - 179 BX470142.4 1 58289 -
18349336 18354335 180 N 5000 No overlap in database    
18354336 18540064 181 FClick to retrieve finished assembled sequence in green bar: rank(s) 181 - 181 BX469898.9 1 185729 +
18540065 18590064 182 N 50000 contig no
18590065 18690565 183 FClick to retrieve finished assembled sequence in green bar: rank(s) 183 - 183 CU326365.10 1 100501 +
18690566 18740565 184 N 50000 contig no
18740566 18894330 185 FClick to retrieve finished assembled sequence in green bar: rank(s) 185 - 185 CU302305.10 1 153765 +
18894331 18944330 186 N 50000 contig no
18944331 19138157 187 FClick to retrieve finished assembled sequence in green bar: rank(s) 187 - 187 CR385047.19 1 193827 +
19138158 19188157 188 N 50000 contig no
19188158 19283118 189 FClick to retrieve finished assembled sequence in green bar: rank(s) 189 - 191 BX908754.8 1 94961 +
19283119 19466105 190 FClick to retrieve finished assembled sequence in green bar: rank(s) 189 - 191 BX572633.7 2001 184987 +
19466106 19620010 191 FClick to retrieve finished assembled sequence in green bar: rank(s) 189 - 191 BX005289.15 2001 155905 +
19620011 19625010 192 N 5000 No overlap in database    
19625011 19741963 193 FClick to retrieve finished assembled sequence in green bar: rank(s) 193 - 198 BX572646.11 1 116953 +
19741964 19893102 194 FClick to retrieve finished assembled sequence in green bar: rank(s) 193 - 198 BX571971.4 2001 153139 +
19893103 20074564 195 FClick to retrieve finished assembled sequence in green bar: rank(s) 193 - 198 BX571976.11 2001 183462 +
20074565 20221243 196 FClick to retrieve finished assembled sequence in green bar: rank(s) 193 - 198 BX571844.6 2001 148679 +
20221244 20229833 197 FClick to retrieve finished assembled sequence in green bar: rank(s) 193 - 198 CR318642.8 2001 10590 +
20229834 20388260 198 FClick to retrieve finished assembled sequence in green bar: rank(s) 193 - 198 BX649642.7 2001 160427 +
20388261 20438260 199 N 50000 contig no
20438261 20646874 200 FClick to retrieve finished assembled sequence in green bar: rank(s) 200 - 200 CR450733.7 1 208614 +
20646875 20696874 201 N 50000 contig no
20696875 20849825 202 FClick to retrieve finished assembled sequence in green bar: rank(s) 202 - 202 BX927076.9 1 152951 +
20849826 20899825 203 N 50000 contig no
20899826 21071366 204 FClick to retrieve finished assembled sequence in green bar: rank(s) 204 - 205 CR352298.10 1 171541 +
21071367 21241911 205 FClick to retrieve finished assembled sequence in green bar: rank(s) 204 - 205 CR847802.11 2001 172545 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
57
Gap types
type-2
1
type-3
56
Total clones
138
Clone HTGS Phases
finished
138
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
333,242
Total finished length of fin clones w/ overlap
18,754,675
Total finished length of fin clones w/o overlap
18,421,433
Total overlap length of fin+unfin clones
333,242
Total finished length of fin+unfin clones w/ overlap
18,754,675
Total finished length of fin+unfin clones w/o overlap
18,421,433

AGP errors

# rank accession seq_start seq_end strand error date
1 49 BX255955.3 1 146,105 -1 Double 5-prime join to 'BX255955.3' Mon, 04 May 2015 02:02

Dovetails

# rank accession status length date
1 51 CR293524.10 unfinished 72,761 Mon, 04 May 2015 02:02
2 66 CR318631.5 unfinished 9,403 Mon, 04 May 2015 02:02
3 104 BX255879.6 unfinished 1 Mon, 04 May 2015 02:02
4 104 BX255879.6 unfinished 1 Mon, 04 May 2015 02:02

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Other links

* quick link - http://q.sanger.ac.uk/o3vo8n34