ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_17 (TPF updated: 2014-10-14)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-252I9
ctg1667
zK252I9
AL928723.5
finished
  GAP (type-3) length unknown    
3 DKEY-172H8
ctg1668
zK172H8
CR774193.12
finished
  GAP (type-3) length unknown    
5 DKEY-246J3
ctg1669
zK246J3
CR933000.14
finished
  GAP (type-3) length unknown    
7 CH211-18H22
ctg1676
zC18H22
CT573049.8
finished
8 CH211-270O7
ctg1676
zC270O7
BX255889.7
finished
  GAP (type-3) length unknown    
10 CH211-134D11
ctg1690
zC134D11
BX005122.10
finished
  GAP (type-3) length unknown    
12 DKEYP-20A11
ctg1709
zKp20A11
CR381638.25
finished
  GAP (type-3) length unknown    
14 DKEYP-53E7
ctg1711
zKp53E7
BX548068.13
finished
15 CH211-215M5
ctg1711
zC215M5
CR318659.26
finished
16 DKEY-27P3
ctg1711
zK27P3
BX005320.4
finished
  GAP (type-3) length unknown    
18 DKEY-12F4
ctg1716
zK12F4
AL845444.9
finished
19 DKEY-5K18
ctg1716
zK5K18
BX000443.5
finished
  GAP (type-3) length unknown    
21 CH211-214C13
ctg1738
zC214C13
BX120000.8
finished
  GAP (type-3) length unknown    
23 CH211-212B24
ctg1740
zC212B24
CR385084.10
finished
24 CH211-195M7
ctg1740
zC195M7
AL805945.5
finished
  GAP (type-3) length unknown    
26 CH211-233N24
ctg1750
zC233N24
AL953899.7
finished
27 CH211-267E21
ctg1750
zC267E21
CR847955.10
finished
  GAP (type-3) length unknown    
29 CH211-236E20
ctg2555
zC236E20
BX276184.16
finished
  GAP (type-3) length unknown    
31 CH211-265I1
ctg2886
zC265I1
CU207254.5
finished
  GAP (type-3) length unknown    
33 CH211-79L10
ctg4773
zC79L10
AL953905.8
finished
34 CH211-209H1
ctg4773
zC209H1
BX324133.12
finished
  GAP (type-3) length unknown    
36 CH211-135B6
ctg5037
zC135B6
AL772189.7
finished
  GAP (type-3) length unknown    
38 CH211-271I22
ctg5049
zC271I22
BX004854.10
finished
  GAP (type-3) length unknown    
40 CH211-57C17
ctg6063
zC57C17
BX469921.4
finished
41 CH211-214A17
ctg6063
zC214A17
CR628332.6
finished
42 CH211-181B15
ctg6063
zC181B15
BX897736.7
finished
  GAP (type-3) length unknown    
44 CH211-1J6
ctg6152
zC1J6
CU179655.6
finished
  GAP (type-3) length unknown    
46 DKEY-210F16
ctg6163
zK210F16
BX322796.12
finished
47 DKEY-7L19
ctg6163
zK7L19
BX004877.10
finished
48 DKEY-260A4
ctg6163
zK260A4
BX322571.5
finished
49 DKEY-81J11
ctg6163
zK81J11
BX005403.15
finished
50 CH211-196N11
ctg6163
zC196N11
AL772132.6
finished
51 DKEY-74L17
ctg6163
zK74L17
BX539349.17
finished
52 DKEY-77I24
ctg6163
zK77I24
BX005258.11
finished
  GAP (type-3) length unknown    
54 DKEY-281M4
ctg6198
zK281M4
CR385075.8
finished
55 DKEY-13B19
ctg6198
zK13B19
BX005070.10
finished
56 CH211-218K4
ctg6198
zC218K4
BX323864.8
finished
57 DKEY-88D24
ctg6198
zK88D24
BX465856.15
finished
  GAP (type-3) length unknown    
59 DKEY-59J17
ctg6223
zK59J17
CR628387.12
finished
60 DKEY-215C14
ctg6223
zK215C14
CR855880.13
finished
  GAP (type-3) length unknown    
62 DKEY-54K20
ctg6227
zK54K20
BX927356.22
finished
  GAP (type-3) length unknown    
64 DKEY-238G8
ctg6287
zK238G8
BX005013.8
finished
  GAP (type-3) length unknown    
66 DKEY-179I14
ctg6364
zK179I14
BX465858.8
finished
67 CH211-247C16
ctg6364
zC247C16
BX323794.17
finished
68 CH211-154E15
ctg6364
zC154E15
BX005435.16
finished
69 CH211-241O15
ctg6364
zC241O15
AL929560.14
finished
  GAP (type-3) length unknown    
71 CH211-168F19
ctg6370
zC168F19
BX649351.10
finished
72 DKEYP-10B2
ctg6370
zKp10B2
BX649290.6
finished
  GAP (type-3) length unknown    
74 DKEY-153J5
ctg6405
zK153J5
BX004833.16
finished
  GAP (type-3) length unknown    
76 CH211-282E3
ctg6413
zC282E3
BX539322.7
finished
77 DKEY-60J4
ctg6413
zK60J4
BX546481.7
finished
78 CH211-226M11
ctg6413
zC226M11
AL954383.13
finished
79 DKEY-60G19
ctg6413
zK60G19
BX088545.7
finished
80 DKEY-272P13
ctg6413
zK272P13
CR627500.4
finished
81 DKEY-261O7
ctg6413
zK261O7
BX511087.12
finished
  GAP (type-3) length unknown    
83 CH211-139G18
ctg6423
zC139G18
AL929338.9
finished
  GAP (type-3) length unknown    
85 CH211-28G14
ctg6497
zC28G14
CR394561.9
finished
  GAP (type-3) length unknown    
87 CH211-23E22
ctg6656
zC23E22
CR376773.7
finished
  GAP (type-3) length unknown    
89 DKEY-181K11
ctg6679
zK181K11
CR627487.6
finished
90 DKEY-215J3
ctg6679
zK215J3
CR749769.6
finished
91 CH211-282O22
ctg6679
zC282O22
BX284692.15
finished
  GAP (type-3) length unknown    
93 DKEYP-72A3
ctg6692
zKp72A3
CR854889.15
finished
  GAP (type-3) length unknown    
95 CH211-106J4
ctg6695
zC106J4
BX248135.5
finished
  GAP (type-3) length unknown    
97 DKEYP-86C11
ctg6697
zKp86C11
BX901925.10
finished
  GAP (type-3) length unknown    
99 DKEY-6K10
ctg6751
zK6K10
CR854843.16
finished
  GAP (type-3) length unknown    
101 CH211-232I12
ctg30786
zC232I12
BX936450.6
finished
  GAP (type-3) length unknown    
103 DKEY-8F16
ctg30786_1
zK8F16
BX005010.24
finished
  GAP (type-3) length unknown    
105 CH1073-66P11
ctg30786_2
zFD66P11
CU628004.4
finished
106 CH1073-117I14
ctg30786_2
zFD117I14
CU861470.4
finished
  GAP (type-3) length unknown    
108 DKEYP-113G3
ctg30786_3
zKp113G3
BX323561.8
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 211720 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL928723.5 1 211720 +
211721 261720 2 N 50000 contig no
261721 362315 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR774193.12 1 100595 +
362316 412315 4 N 50000 contig no
412316 579952 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CR933000.14 1 167637 +
579953 629952 6 N 50000 contig no
629953 656966 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CT573049.8 1 27014 +
656967 817884 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 BX255889.7 2001 162918 +
817885 867884 9 N 50000 contig no
867885 1052026 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 BX005122.10 1 184142 +
1052027 1102026 11 N 50000 contig no
1102027 1258214 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 CR381638.25 1 156188 +
1258215 1308214 13 N 50000 contig no
1308215 1485663 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 BX548068.13 1 177449 +
1485664 1650893 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 CR318659.26 2001 167230 +
1650894 1655893 16 N 5000 No overlap in database    
1655894 1798720 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 BX005320.4 1 142827 +
1798721 1848720 18 N 50000 contig no
1848721 2049026 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 AL845444.9 1 200306 +
2049027 2240194 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 BX000443.5 1 191168 -
2240195 2290194 21 N 50000 contig no
2290195 2504922 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 BX120000.8 1 214728 +
2504923 2554922 23 N 50000 contig no
2554923 2689748 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 CR385084.10 1 134826 +
2689749 2902352 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 AL805945.5 1 212604 -
2902353 2952352 26 N 50000 contig no
2952353 3122148 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AL953899.7 1 169796 -
3122149 3218442 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 CR847955.10 2001 98294 +
3218443 3268442 29 N 50000 contig no
3268443 3429884 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 BX276184.16 1 161442 +
3429885 3479884 31 N 50000 contig no
3479885 3604488 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 CU207254.5 1 124604 +
3604489 3654488 33 N 50000 contig no
3654489 3815994 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 AL953905.8 1 161506 +
3815995 3943124 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 BX324133.12 1 127130 -
3943125 3993124 36 N 50000 contig no
3993125 4177082 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 AL772189.7 1 183958 +
4177083 4227082 38 N 50000 contig no
4227083 4384092 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 BX004854.10 1 157010 +
4384093 4434092 40 N 50000 contig no
4434093 4618912 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX469921.4 2001 186820 -
4618913 4715906 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 CR628332.6 2001 98994 -
4715907 4857893 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 43 BX897736.7 1 141987 -
4857894 4907893 44 N 50000 contig no
4907894 5102136 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CU179655.6 1 194243 +
5102137 5152136 46 N 50000 contig no
5152137 5220370 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 BX322796.12 1 68234 +
5220371 5467609 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 BX004877.10 2001 249239 +
5467610 5523634 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 BX322571.5 2001 58025 +
5523635 5596003 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 BX005403.15 2001 74369 +
5596004 5799805 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 AL772132.6 1 203802 -
5799806 5936686 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 BX539349.17 2001 138881 +
5936687 6129764 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 53 BX005258.11 1 193078 +
6129765 6179764 54 N 50000 contig no
6179765 6316035 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 58 CR385075.8 1 136271 +
6316036 6554992 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 58 BX005070.10 1999 240955 -
6554993 6709816 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 58 BX323864.8 1 154824 +
6709817 6864851 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 58 BX465856.15 2001 157035 +
6864852 6914851 59 N 50000 contig no
6914852 7135515 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 61 CR628387.12 1 220664 +
7135516 7249358 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 61 CR855880.13 2001 115843 +
7249359 7299358 62 N 50000 contig no
7299359 7503553 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 BX927356.22 1 204195 +
7503554 7553553 64 N 50000 contig no
7553554 7718417 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 BX005013.8 1 164864 +
7718418 7768417 66 N 50000 contig no
7768418 7857125 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 70 BX465858.8 1 88708 -
7857126 7946335 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 70 BX323794.17 2001 91210 +
7946336 8110582 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 70 BX005435.16 2001 166247 +
8110583 8212402 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 70 AL929560.14 2001 103820 +
8212403 8262402 71 N 50000 contig no
8262403 8404971 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 BX649351.10 2001 144569 -
8404972 8533808 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 BX649290.6 1 128837 -
8533809 8583808 74 N 50000 contig no
8583809 8799998 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 BX004833.16 1 216190 +
8799999 8849998 76 N 50000 contig no
8849999 8894797 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 BX539322.7 1 44799 +
8894798 8996699 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 BX546481.7 2001 103902 +
8996700 9201378 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 79 AL954383.13 2001 206679 +
9201379 9206378 80 N 5000 No overlap in database    
9206379 9363259 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 83 BX088545.7 1 156881 -
9363260 9372150 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 83 CR627500.4 2001 10891 +
9372151 9554162 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 83 BX511087.12 1 182012 -
9554163 9604162 84 N 50000 contig no
9604163 9783561 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 AL929338.9 1 179399 +
9783562 9833561 86 N 50000 contig no
9833562 9988593 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 87 CR394561.9 1 155032 +
9988594 10038593 88 N 50000 contig no
10038594 10205681 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 89 CR376773.7 1 167088 +
10205682 10255681 90 N 50000 contig no
10255682 10360269 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 92 CR627487.6 1 104588 +
10360270 10529232 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 92 CR749769.6 2031 170993 +
10529233 10534232 93 N 5000 No overlap in database    
10534233 10697201 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 94 BX284692.15 1 162969 +
10697202 10747201 95 N 50000 contig no
10747202 10949537 96 FClick to retrieve finished assembled sequence in green bar: rank(s) 96 - 96 CR854889.15 1 202336 +
10949538 10999537 97 N 50000 contig no
10999538 11152000 98 FClick to retrieve finished assembled sequence in green bar: rank(s) 98 - 98 BX248135.5 1 152463 +
11152001 11202000 99 N 50000 contig no
11202001 11389245 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 100 - 100 BX901925.10 1 187245 +
11389246 11439245 101 N 50000 contig no
11439246 11511658 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 102 CR854843.16 1 72413 +
11511659 11561658 103 N 50000 contig no
11561659 11729576 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 104 - 104 BX936450.6 1 167918 +
11729577 11779576 105 N 50000 contig no
11779577 12016133 106 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 106 BX005010.24 1 236557 +
12016134 12066133 107 N 50000 contig no
12066134 12097092 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 108 - 109 CU628004.4 1 30959 -
12097093 12102838 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 108 - 109 CU861470.4 2001 7746 +
12102839 12152838 110 N 50000 contig no
12152839 12220183 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 111 BX323561.8 1 67345 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
38
Gap types
type-3
38
Total clones
70
Clone HTGS Phases
finished
70
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
56,054
Total finished length of fin clones w/ overlap
10,361,211
Total finished length of fin clones w/o overlap
10,305,157
Total overlap length of fin+unfin clones
56,054
Total finished length of fin+unfin clones w/ overlap
10,361,211
Total finished length of fin+unfin clones w/o overlap
10,305,157

Dovetails

# rank accession status length date
1 90 CR749769.6 unfinished 30 Sat, 05 Sep 2015 02:45

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Other links

* quick link - http://q.sanger.ac.uk/wjyy8ixv