ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_15 (TPF updated: 2013-11-05)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH211-152B13
ctg1200
zC152B13
EPN details
AL928863.14
finished
  GAP (type-3) length unknown    
3 CH211-130P10
ctg1489
zC130P10
EPN details
BX000987.6
finished
4 CH211-87L3
ctg1489
zC87L3
EPN details
BX005217.5
finished
  GAP (type-3) length unknown    
6 CH211-165B17
ctg1493
zC165B17
EPN details
CR376837.5
finished
  GAP (type-3) length unknown    
8 CH211-13K16
ctg1500
zC13K16
EPN details
BX005141.5
finished
  GAP (type-3) length unknown    
10 CH211-277G22
ctg1502
zC277G22
EPN details
BX072563.7
finished
11 DKEY-83J7
ctg1502
zK83J7
EPN details
CR626890.8
finished
12 DKEY-29H23
ctg1502
zK29H23
EPN details
BX005374.5
finished
13 CH211-244M22
ctg1502
zC244M22
EPN details
AL935335.5
finished
  GAP (type-3) length unknown    
15 CH211-190H2
ctg1505
zC190H2
EPN details
AL929530.9
finished
  GAP (type-3) length unknown    
17 DKEY-27J17
ctg1506
zK27J17
EPN details
AL954188.10
finished
18 DKEY-188M1
ctg1506
zK188M1
EPN details
CR589881.11
finished
  GAP (type-3) length unknown    
20 CH211-132F7
ctg1508
zC132F7
EPN details
CR513790.9
finished
21 CH211-162B11
ctg1508
zC162B11
EPN details
CT027984.6
finished
22 DKEYP-67B10
ctg1508
zKp67B10
EPN details
BX294000.11
finished
  GAP (type-3) length unknown    
24 RP71-85J19
ctg1509
bZ85J19
EPN details
BX469904.11
finished
25 CH211-69C9
ctg1509
zC69C9
EPN details
BX005045.10
finished
  GAP (type-3) length unknown    
27 CH211-227G18
ctg1515
zC227G18
EPN details
AL929010.5
finished
  GAP (type-3) length unknown    
29 DKEY-14B11
ctg1520
zK14B11
EPN details
BX000431.10
finished
30 DKEY-32O12
ctg1520
zK32O12
EPN details
BX004802.12
finished
31 DKEY-76K14
ctg1520
zK76K14
EPN details
BX511312.6
finished
32 RP71-30D15
ctg1520
bZ30D15
EPN details
CR848677.6
finished
33 DKEY-21I14
ctg1520
zK21I14
EPN details
BX005404.7
finished
  GAP (type-3) length unknown    
35 DKEY-58G2
ctg1527
zK58G2
EPN details
CR956633.8
finished
36 CH211-276A12
ctg1527
zC276A12
EPN details
CR388130.8
finished
  GAP (type-3) length unknown    
38 CH211-163P9
ctg1532
zC163P9
EPN details
CU013546.12
finished
  GAP (type-3) length unknown    
40 CH211-247J4
ctg1539
zC247J4
EPN details
CR387926.5
finished
  GAP (type-3) length unknown    
42 DKEY-145M5
ctg1552
zK145M5
EPN details
BX897686.8
finished
43 CH211-77I17
ctg1552
zC77I17
EPN details
BX005390.11
finished
44 DKEY-64O12
ctg1552
zK64O12
EPN details
BX004818.16
finished
  GAP (type-3) length unknown    
46 DKEY-265J11
ctg1568
zK265J11
EPN details
BX901890.16
finished
  GAP (type-3) length unknown    
48 DKEY-28N4
ctg1597
zK28N4
EPN details
AL954326.7
finished
49 DKEY-13N1
ctg1597
zK13N1
EPN details
AL935302.7
finished
50 CH211-46O21
ctg1597
zC46O21
EPN details
BX119920.7
finished
51 CH211-9P5
ctg1597
zC9P5
EPN details
CT027775.5
finished
  GAP (type-3) length unknown    
53 CH211-9D19
ctg2388
zC9D19
EPN details
CR392353.6
finished
  GAP (type-3) length unknown    
55 CH211-210O21
ctg2471
zC210O21
EPN details
CR848009.9
finished
  GAP (type-3) length unknown    
57 CH211-262O5
ctg2791
zC262O5
EPN details
CR855314.5
finished
  GAP (type-3) length unknown    
59 CH211-151C7
ctg4509
zC151C7
EPN details
BX000997.10
finished
  GAP (type-3) length unknown    
61 CH211-122O8
ctg4774
zC122O8
EPN details
AL929103.7
finished
  GAP (type-3) length unknown    
63 DKEY-48O24
ctg5009
zK48O24
EPN details
BX530057.5
finished
  GAP (type-3) length unknown    
65 DKEY-148A13
ctg5018
zK148A13
EPN details
BX629345.5
finished
  GAP (type-3) length unknown    
67 CH211-253H1
ctg6680
zC253H1
EPN details
CR848722.7
finished
68 CH211-144H19
ctg6680
zC144H19
EPN details
AL929151.5
finished
  GAP (type-3) length unknown    
70 CH73-226J14
ctg106
zH226J14
EPN details

-

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 142564 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL928863.14 1 142564 +
142565 192564 2 N 50000 contig no
192565 344636 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX000987.6 1 152072 +
344637 349636 4 N 5000 No overlap in database    
349637 504088 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX005217.5 1 154452 +
504089 554088 6 N 50000 contig no
554089 631811 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CR376837.5 1 77723 +
631812 681811 8 N 50000 contig no
681812 848387 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 BX005141.5 1 166576 +
848388 898387 10 N 50000 contig no
898388 1069052 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 BX072563.7 1 170665 +
1069053 1278179 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 CR626890.8 2001 211127 +
1278180 1283179 13 N 5000 No overlap in database    
1283180 1485497 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 BX005374.5 2001 204318 -
1485498 1683046 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AL935335.5 1 197549 +
1683047 1733046 16 N 50000 contig no
1733047 1886009 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 AL929530.9 1 152963 +
1886010 1936009 18 N 50000 contig no
1936010 2146980 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 AL954188.10 1 210971 +
2146981 2151980 20 N 5000 No overlap in database    
2151981 2331944 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CR589881.11 1 179964 +
2331945 2381944 22 N 50000 contig no
2381945 2539356 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CR513790.9 1 157412 -
2539357 2557566 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CT027984.6 2001 20210 +
2557567 2752937 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX294000.11 2001 197371 +
2752938 2802937 26 N 50000 contig no
2802938 2925451 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX469904.11 2001 124514 -
2925452 3087263 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX005045.10 1 161812 -
3087264 3137263 29 N 50000 contig no
3137264 3286582 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AL929010.5 1 149319 +
3286583 3336582 31 N 50000 contig no
3336583 3536743 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX000431.10 1 200161 +
3536744 3630800 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX004802.12 2001 96057 +
3630801 3669487 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX511312.6 2001 40687 +
3669488 3674487 35 N 5000 No overlap in database    
3674488 3697143 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 CR848677.6 1 22656 +
3697144 3924786 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 BX005404.7 2001 229643 +
3924787 3974786 38 N 50000 contig no
3974787 4016938 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CR956633.8 1 42152 +
4016939 4093264 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CR388130.8 1983 78308 +
4093265 4143264 41 N 50000 contig no
4143265 4277110 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 CU013546.12 1 133846 +
4277111 4327110 43 N 50000 contig no
4327111 4468393 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CR387926.5 1 141283 +
4468394 4518393 45 N 50000 contig no
4518394 4633926 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX897686.8 1 115533 +
4633927 4713305 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX005390.11 2001 81379 +
4713306 4927204 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX004818.16 2001 215899 +
4927205 4977204 49 N 50000 contig no
4977205 5172348 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 BX901890.16 1 195144 +
5172349 5222348 51 N 50000 contig no
5222349 5369735 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 AL954326.7 1 147387 +
5369736 5374735 53 N 5000 No overlap in database    
5374736 5527441 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 AL935302.7 1 152706 +
5527442 5649154 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX119920.7 2001 123713 +
5649155 5654810 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 CT027775.5 2001 7656 +
5654811 5704810 57 N 50000 contig no
5704811 5888409 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 CR392353.6 1 183599 +
5888410 5938409 59 N 50000 contig no
5938410 6095682 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 CR848009.9 1 157273 +
6095683 6145682 61 N 50000 contig no
6145683 6269749 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 CR855314.5 1 124067 +
6269750 6319749 63 N 50000 contig no
6319750 6480670 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 BX000997.10 1 160921 +
6480671 6530670 65 N 50000 contig no
6530671 6699300 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 AL929103.7 1 168630 +
6699301 6749300 67 N 50000 contig no
6749301 6927580 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 68 BX530057.5 1 178280 +
6927581 6977580 69 N 50000 contig no
6977581 7111240 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 BX629345.5 1 133660 +
7111241 7161240 71 N 50000 contig no
7161241 7206825 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 CR848722.7 1 45585 -
7206826 7379471 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 AL929151.5 1 172646 -
7379472 7429471 74 N 50000 contig no
7429472 7479471 75 N 50000 clone no

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-152B13
ctg1200
zC152B13
EPN details
Submitted to EMBL
25-FEB-08
AL928863.14
finished
142564 CHORI-211        
  GAP (type-3) length unknown                  
3 CH211-130P10
ctg1489
zC130P10
EPN details
Analysed
21-FEB-05
BX000987.6
finished
152072 CHORI-211        
4 CH211-87L3
ctg1489
zC87L3
EPN details
Analysed
13-NOV-03
BX005217.5
finished
154452 CHORI-211        
  GAP (type-3) length unknown                  
6 CH211-165B17
ctg1493
zC165B17
EPN details
Analysed
03-MAY-05
CR376837.5
finished
77723 CHORI-211        
  GAP (type-3) length unknown                  
8 CH211-13K16
ctg1500
zC13K16
EPN details
Analysed
29-JAN-04
BX005141.5
finished
166576 CHORI-211        
  GAP (type-3) length unknown                  
10 CH211-277G22
ctg1502
zC277G22
EPN details
Submitted to EMBL
12-JAN-09
BX072563.7
finished
170665 CHORI-211 3' / 5'
170665 / 2001
- / -
2000
0
Identified
2005-02-26
find_overl...
badger
 
11 DKEY-83J7
ctg1502
zK83J7
EPN details
Analysed
29-APR-05
CR626890.8
finished
211127 DanioKey        
12 DKEY-29H23
ctg1502
zK29H23
EPN details
Analysed
07-FEB-04
BX005374.5
finished
204318 DanioKey 5' / 5'
2001 / 1
- / -
2003
0.15
Commented
2005-02-21
edit_overl...
jpa
 
13 CH211-244M22
ctg1502
zC244M22
EPN details
Analysed
27-JUN-03
AL935335.5
finished
197549 CHORI-211        
  GAP (type-3) length unknown                  
15 CH211-190H2
ctg1505
zC190H2
EPN details
Submitted to EMBL
12-JAN-09
AL929530.9
finished
152963 CHORI-211        
  GAP (type-3) length unknown                  
17 DKEY-27J17
ctg1506
zK27J17
EPN details
Analysed
14-MAY-04
AL954188.10
finished
210971 DanioKey        
18 DKEY-188M1
ctg1506
zK188M1
EPN details
Analysed
10-AUG-05
CR589881.11
finished
179964 DanioKey        
  GAP (type-3) length unknown                  
20 CH211-132F7
ctg1508
zC132F7
EPN details
Analysed
24-MAY-05
CR513790.9
finished
157412 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2006-06-22
find_overl...
badger
 
21 CH211-162B11
ctg1508
zC162B11
EPN details
Analysed
22-JUN-06
CT027984.6
finished
20210 CHORI-211 3' / 5'
20210 / 2001
- / -
2000
0
Identified
2006-06-22
find_overl...
badger
 
22 DKEYP-67B10
ctg1508
zKp67B10
EPN details
Analysed
10-AUG-04
BX294000.11
finished
197371 DanioKeypilot        
  GAP (type-3) length unknown                  
24 RP71-85J19
ctg1509
bZ85J19
EPN details
Analysed
12-MAR-05
BX469904.11
finished
124514 RPCI-71 5' / 3'
2001 / 161812
- / -
2000
0
Identified
2004-10-01
find_overl...
badger
 
25 CH211-69C9
ctg1509
zC69C9
EPN details
Analysed
14-FEB-04
BX005045.10
finished
161812 CHORI-211        
  GAP (type-3) length unknown                  
27 CH211-227G18
ctg1515
zC227G18
EPN details
Analysed
24-DEC-02
AL929010.5
finished
149319 CHORI-211        
  GAP (type-3) length unknown                  
29 DKEY-14B11
ctg1520
zK14B11
EPN details
Analysed
22-JAN-04
BX000431.10
finished
200161 DanioKey 3' / 5'
200161 / 2001
- / -
2000
0
Commented
2006-07-26
edit_overl...
nts
 
30 DKEY-32O12
ctg1520
zK32O12
EPN details
Analysed
06-FEB-04
BX004802.12
finished
96057 DanioKey 3' / 5'
96057 / 2001
- / -
2000
0
Commented
2006-07-26
edit_overl...
nts
 
31 DKEY-76K14
ctg1520
zK76K14
EPN details
Analysed
06-JUN-04
BX511312.6
finished
40687 DanioKey        
32 RP71-30D15
ctg1520
bZ30D15
EPN details
Analysed
21-JUL-05
CR848677.6
finished
22656 RPCI-71 3' / 5'
22656 / 2001
- / -
2000
0
Commented
2006-07-26
edit_overl...
nts
 
33 DKEY-21I14
ctg1520
zK21I14
EPN details
Analysed
28-FEB-04
BX005404.7
finished
229643 DanioKey        
  GAP (type-3) length unknown                  
35 DKEY-58G2
ctg1527
zK58G2
EPN details
Analysed
07-JUL-06
CR956633.8
finished
42152 DanioKey 3' / 5'
42152 / 1983
- / -
2000
0
Identified
2010-07-06
find_overl...
humpub
 
36 CH211-276A12
ctg1527
zC276A12
EPN details
Analysed
20-APR-05
CR388130.8
finished
78308 CHORI-211        
  GAP (type-3) length unknown                  
38 CH211-163P9
ctg1532
zC163P9
EPN details
Analysed
26-APR-07
CU013546.12
finished
133846 CHORI-211        
  GAP (type-3) length unknown                  
40 CH211-247J4
ctg1539
zC247J4
EPN details
Analysed
16-MAR-05
CR387926.5
finished
141283 CHORI-211        
  GAP (type-3) length unknown                  
42 DKEY-145M5
ctg1552
zK145M5
EPN details
Analysed
19-JUL-05
BX897686.8
finished
115533 DanioKey 3' / 5'
115533 / 2001
- / -
2000
0
Identified
2005-06-04
find_overl...
badger
 
43 CH211-77I17
ctg1552
zC77I17
EPN details
Analysed
15-APR-04
BX005390.11
finished
81379 CHORI-211 3' / 5'
81379 / 2001
- / -
2000
0
Identified
2004-04-09
find_overl...
badger
 
44 DKEY-64O12
ctg1552
zK64O12
EPN details
Analysed
12-MAR-04
BX004818.16
finished
215899 DanioKey        
  GAP (type-3) length unknown                  
46 DKEY-265J11
ctg1568
zK265J11
EPN details
Analysed
15-AUG-06
BX901890.16
finished
195144 DanioKey        
  GAP (type-3) length unknown                  
48 DKEY-28N4
ctg1597
zK28N4
EPN details
Analysed
21-MAY-03
AL954326.7
finished
147387 DanioKey        
49 DKEY-13N1
ctg1597
zK13N1
EPN details
Analysed
24-JUN-04
AL935302.7
finished
152706 DanioKey 3' / 5'
152706 / 2001
- / 1
1999
0
Identified
2005-04-16
find_overl...
badger
 
50 CH211-46O21
ctg1597
zC46O21
EPN details
Analysed
20-APR-05
BX119920.7
finished
123713 CHORI-211 3' / 5'
123713 / 2001
- / -
2000
0
Identified
2006-06-26
find_overl...
badger
 
51 CH211-9P5
ctg1597
zC9P5
EPN details
Analysed
23-JUN-06
CT027775.5
finished
7656 CHORI-211        
  GAP (type-3) length unknown                  
53 CH211-9D19
ctg2388
zC9D19
EPN details
Analysed
14-MAR-06
CR392353.6
finished
183599 CHORI-211        
  GAP (type-3) length unknown                  
55 CH211-210O21
ctg2471
zC210O21
EPN details
Analysed
04-MAY-06
CR848009.9
finished
157273 CHORI-211        
  GAP (type-3) length unknown                  
57 CH211-262O5
ctg2791
zC262O5
EPN details
Analysed
24-JAN-06
CR855314.5
finished
124067 CHORI-211        
  GAP (type-3) length unknown                  
59 CH211-151C7
ctg4509
zC151C7
EPN details
Submitted to EMBL
12-JAN-09
BX000997.10
finished
160921 CHORI-211        
  GAP (type-3) length unknown                  
61 CH211-122O8
ctg4774
zC122O8
EPN details
Analysed
14-OCT-03
AL929103.7
finished
168630 CHORI-211        
  GAP (type-3) length unknown                  
63 DKEY-48O24
ctg5009
zK48O24
EPN details
Analysed
25-MAY-04
BX530057.5
finished
178280 DanioKey        
  GAP (type-3) length unknown                  
65 DKEY-148A13
ctg5018
zK148A13
EPN details
Submitted to EMBL
12-JAN-09
BX629345.5
finished
133660 DanioKey        
  GAP (type-3) length unknown                  
67 CH211-253H1
ctg6680
zC253H1
EPN details
Analysed
04-APR-06
CR848722.7
finished
45585 CHORI-211 5' / 3'
1 / 172646
- / -
2000
0
Identified
2008-07-04
find_overl...
humpub
 
68 CH211-144H19
ctg6680
zC144H19
EPN details
Analysed
23-MAR-03
AL929151.5
finished
174646 CHORI-211        
  GAP (type-3) length unknown                  
70 CH73-226J14
ctg106
zH226J14
EPN details
Cancelled
12-MAR-14

-
- CHORI-73        

Statistics

Clone Summary

Number of gaps
25
Gap types
type-3
25
Total clones
45
Clone HTGS Phases
finished
44
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH73-226J14 (zH226J14)

Overlap Summary

Total overlap length of fin clones
28,002
Total finished length of fin clones w/ overlap
6,182,453
Total finished length of fin clones w/o overlap
6,154,451
Total overlap length of fin+unfin clones
28,002
Total finished length of fin+unfin clones w/ overlap
6,182,453
Total finished length of fin+unfin clones w/o overlap
6,154,451

Dovetails

# rank accession status length date
1 50 BX119920.7 unfinished 1 Thu, 27 Nov 2014 02:15

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Other links

* quick link - http://q.sanger.ac.uk/h446uekx