ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_15 (TPF updated: 2013-11-05)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-152B13
ctg1200
zC152B13
AL928863.14
finished
  GAP (type-3) length unknown    
3 CH211-130P10
ctg1489
zC130P10
BX000987.6
finished
4 CH211-87L3
ctg1489
zC87L3
BX005217.5
finished
  GAP (type-3) length unknown    
6 CH211-165B17
ctg1493
zC165B17
CR376837.5
finished
  GAP (type-3) length unknown    
8 CH211-13K16
ctg1500
zC13K16
BX005141.5
finished
  GAP (type-3) length unknown    
10 CH211-277G22
ctg1502
zC277G22
BX072563.7
finished
11 DKEY-83J7
ctg1502
zK83J7
CR626890.8
finished
12 DKEY-29H23
ctg1502
zK29H23
BX005374.5
finished
13 CH211-244M22
ctg1502
zC244M22
AL935335.5
finished
  GAP (type-3) length unknown    
15 CH211-190H2
ctg1505
zC190H2
AL929530.9
finished
  GAP (type-3) length unknown    
17 DKEY-27J17
ctg1506
zK27J17
AL954188.10
finished
18 DKEY-188M1
ctg1506
zK188M1
CR589881.11
finished
  GAP (type-3) length unknown    
20 CH211-132F7
ctg1508
zC132F7
CR513790.9
finished
21 CH211-162B11
ctg1508
zC162B11
CT027984.6
finished
22 DKEYP-67B10
ctg1508
zKp67B10
BX294000.11
finished
  GAP (type-3) length unknown    
24 RP71-85J19
ctg1509
bZ85J19
BX469904.11
finished
25 CH211-69C9
ctg1509
zC69C9
BX005045.10
finished
  GAP (type-3) length unknown    
27 CH211-227G18
ctg1515
zC227G18
AL929010.5
finished
  GAP (type-3) length unknown    
29 DKEY-14B11
ctg1520
zK14B11
BX000431.10
finished
30 DKEY-32O12
ctg1520
zK32O12
BX004802.12
finished
31 DKEY-76K14
ctg1520
zK76K14
BX511312.6
finished
32 RP71-30D15
ctg1520
bZ30D15
CR848677.6
finished
33 DKEY-21I14
ctg1520
zK21I14
BX005404.7
finished
  GAP (type-3) length unknown    
35 DKEY-58G2
ctg1527
zK58G2
CR956633.8
finished
36 CH211-276A12
ctg1527
zC276A12
CR388130.8
finished
  GAP (type-3) length unknown    
38 CH211-163P9
ctg1532
zC163P9
CU013546.12
finished
  GAP (type-3) length unknown    
40 CH211-247J4
ctg1539
zC247J4
CR387926.5
finished
  GAP (type-3) length unknown    
42 DKEY-145M5
ctg1552
zK145M5
BX897686.8
finished
43 CH211-77I17
ctg1552
zC77I17
BX005390.11
finished
44 DKEY-64O12
ctg1552
zK64O12
BX004818.16
finished
  GAP (type-3) length unknown    
46 DKEY-265J11
ctg1568
zK265J11
BX901890.16
finished
  GAP (type-3) length unknown    
48 DKEY-28N4
ctg1597
zK28N4
AL954326.7
finished
49 DKEY-13N1
ctg1597
zK13N1
AL935302.7
finished
50 CH211-46O21
ctg1597
zC46O21
BX119920.7
finished
51 CH211-9P5
ctg1597
zC9P5
CT027775.5
finished
  GAP (type-3) length unknown    
53 CH211-9D19
ctg2388
zC9D19
CR392353.6
finished
  GAP (type-3) length unknown    
55 CH211-210O21
ctg2471
zC210O21
CR848009.9
finished
  GAP (type-3) length unknown    
57 CH211-262O5
ctg2791
zC262O5
CR855314.5
finished
  GAP (type-3) length unknown    
59 CH211-151C7
ctg4509
zC151C7
BX000997.10
finished
  GAP (type-3) length unknown    
61 CH211-122O8
ctg4774
zC122O8
AL929103.7
finished
  GAP (type-3) length unknown    
63 DKEY-48O24
ctg5009
zK48O24
BX530057.5
finished
  GAP (type-3) length unknown    
65 DKEY-148A13
ctg5018
zK148A13
BX629345.5
finished
  GAP (type-3) length unknown    
67 CH211-253H1
ctg6680
zC253H1
CR848722.7
finished
68 CH211-144H19
ctg6680
zC144H19
AL929151.5
finished
  GAP (type-3) length unknown    
70 CH73-226J14
ctg106
zH226J14

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AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 142564 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL928863.14 1 142564 +
142565 192564 2 N 50000 contig no
192565 344636 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX000987.6 1 152072 +
344637 349636 4 N 5000 No overlap in database    
349637 504088 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX005217.5 1 154452 +
504089 554088 6 N 50000 contig no
554089 631811 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CR376837.5 1 77723 +
631812 681811 8 N 50000 contig no
681812 848387 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 BX005141.5 1 166576 +
848388 898387 10 N 50000 contig no
898388 1069052 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 BX072563.7 1 170665 +
1069053 1278179 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 CR626890.8 2001 211127 +
1278180 1283179 13 N 5000 No overlap in database    
1283180 1485497 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 BX005374.5 2001 204318 -
1485498 1683046 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 AL935335.5 1 197549 +
1683047 1733046 16 N 50000 contig no
1733047 1886009 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 AL929530.9 1 152963 +
1886010 1936009 18 N 50000 contig no
1936010 2146980 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 AL954188.10 1 210971 +
2146981 2151980 20 N 5000 No overlap in database    
2151981 2331944 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CR589881.11 1 179964 +
2331945 2381944 22 N 50000 contig no
2381945 2539356 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CR513790.9 1 157412 -
2539357 2557566 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 CT027984.6 2001 20210 +
2557567 2752937 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 25 BX294000.11 2001 197371 +
2752938 2802937 26 N 50000 contig no
2802938 2925451 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX469904.11 2001 124514 -
2925452 3087263 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX005045.10 1 161812 -
3087264 3137263 29 N 50000 contig no
3137264 3286582 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AL929010.5 1 149319 +
3286583 3336582 31 N 50000 contig no
3336583 3536743 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX000431.10 1 200161 +
3536744 3630800 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX004802.12 2001 96057 +
3630801 3669487 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 34 BX511312.6 2001 40687 +
3669488 3674487 35 N 5000 No overlap in database    
3674488 3697143 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 CR848677.6 1 22656 +
3697144 3924786 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 BX005404.7 2001 229643 +
3924787 3974786 38 N 50000 contig no
3974787 4016938 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CR956633.8 1 42152 +
4016939 4093264 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CR388130.8 1983 78308 +
4093265 4143264 41 N 50000 contig no
4143265 4277110 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 CU013546.12 1 133846 +
4277111 4327110 43 N 50000 contig no
4327111 4468393 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CR387926.5 1 141283 +
4468394 4518393 45 N 50000 contig no
4518394 4633926 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX897686.8 1 115533 +
4633927 4713305 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX005390.11 2001 81379 +
4713306 4927204 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX004818.16 2001 215899 +
4927205 4977204 49 N 50000 contig no
4977205 5172348 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 BX901890.16 1 195144 +
5172349 5222348 51 N 50000 contig no
5222349 5369735 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 AL954326.7 1 147387 +
5369736 5374735 53 N 5000 No overlap in database    
5374736 5527441 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 AL935302.7 1 152706 +
5527442 5649154 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX119920.7 2001 123713 +
5649155 5654810 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 CT027775.5 2001 7656 +
5654811 5704810 57 N 50000 contig no
5704811 5888409 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 CR392353.6 1 183599 +
5888410 5938409 59 N 50000 contig no
5938410 6095682 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 CR848009.9 1 157273 +
6095683 6145682 61 N 50000 contig no
6145683 6269749 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 CR855314.5 1 124067 +
6269750 6319749 63 N 50000 contig no
6319750 6480670 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 BX000997.10 1 160921 +
6480671 6530670 65 N 50000 contig no
6530671 6699300 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 AL929103.7 1 168630 +
6699301 6749300 67 N 50000 contig no
6749301 6927580 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 68 BX530057.5 1 178280 +
6927581 6977580 69 N 50000 contig no
6977581 7111240 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 BX629345.5 1 133660 +
7111241 7161240 71 N 50000 contig no
7161241 7206825 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 CR848722.7 1 45585 -
7206826 7379471 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 73 AL929151.5 1 172646 -
7379472 7429471 74 N 50000 contig no
7429472 7479471 75 N 50000 clone no

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
25
Gap types
type-3
25
Total clones
45
Clone HTGS Phases
finished
44
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH73-226J14 (project unknown)

Overlap Summary

Total overlap length of fin clones
28,002
Total finished length of fin clones w/ overlap
6,182,453
Total finished length of fin clones w/o overlap
6,154,451
Total overlap length of fin+unfin clones
28,002
Total finished length of fin+unfin clones w/ overlap
6,182,453
Total finished length of fin+unfin clones w/o overlap
6,154,451

Dovetails

# rank accession status length date
1 50 BX119920.7 unfinished 1 Sat, 30 May 2015 00:40

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Other links

* quick link - http://q.sanger.ac.uk/h446uekx