ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_13 (TPF updated: 2013-12-23)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-250O1
ctg1246
zC250O1
CR354539.13
finished
  GAP (type-3) length unknown    
3 CH211-226D5
ctg1254
zC226D5
BX248117.9
finished
  GAP (type-3) length unknown    
5 CH211-245A19
ctg1256
zC245A19
BX276188.11
finished
  GAP (type-3) length unknown    
7 CH211-11M20
ctg1259
zC11M20
BX005151.5
finished
  GAP (type-3) length unknown    
9 CH211-190M18
ctg1260
zC190M18
CR759811.8
finished
  GAP (type-3) length unknown    
11 CH211-207N6
ctg1269
zC207N6
BX284621.6
finished
12 CH211-247J17
ctg1269
zC247J17
CR932440.7
finished
13 CH211-160I12
ctg1269
zC160I12
AL935298.5
finished
14 CH211-222A10
ctg1269
zC222A10
AL954180.6
finished
  GAP (type-3) length unknown    
16 DKEY-14B16
ctg1272
zK14B16
BX004975.9
finished
17 CH211-101D12
ctg1272
zC101D12
BX005063.7
finished
18 DKEY-56N17
ctg1272
zK56N17
AL845307.30
finished
19 CH211-243O19
ctg1272
zC243O19
BX001022.9
finished
  GAP (type-3) length unknown    
21 CH211-193J5
ctg1273
zC193J5
CR352233.9
finished
  GAP (type-3) length unknown    
23 CH211-226D12
ctg1276
zC226D12
AL954358.5
finished
  GAP (type-3) length unknown    
25 DKEY-250D11
ctg1280
zK250D11
CU137726.6
finished
  GAP (type-3) length unknown    
27 CH211-224B17
ctg1282
zC224B17
CR931960.12
finished
28 DKEY-169I10
ctg1282
zK169I10
BX928754.9
finished
29 DKEY-158N21
ctg1282
zK158N21
BX927129.10
finished
30 DKEY-68G8
ctg1282
zK68G8
AL954847.17
finished
  GAP (type-3) length unknown    
32 DKEY-32H6
ctg1284
zK32H6
CR762461.7
finished
33 RP71-77D7
ctg1284
bZ77D7
BX119973.7
finished
34 CH211-88G8
ctg1284
zC88G8
CR853301.6
finished
35 CH211-129E5
ctg1284
zC129E5
CR382339.9
finished
36 CH211-182M16
ctg1284
zC182M16
CR925838.4
finished
37 CH211-146M5
ctg1284
zC146M5
BX005193.17
finished
  GAP (type-3) length unknown    
39 DKEY-22N17
ctg1287
zK22N17
BX572080.18
finished
40 CH211-167E4
ctg1287
zC167E4
CR759945.8
finished
  GAP (type-3) length unknown    
42 DKEY-237N21
ctg1290
zK237N21
CR762482.6
finished
43 DKEY-239H16
ctg1290
zK239H16
CR788242.3
finished
44 DKEYP-13C1
ctg1290
zKp13C1
CR788284.8
finished
45 DKEY-16I6
ctg1290
zK16I6
BX072573.5
finished
46 CH211-155K1
ctg1290
zC155K1
AL929492.6
finished
47 CH211-269O12
ctg1290
zC269O12
BX284700.13
finished
  GAP (type-3) length unknown    
49 DKEYP-74B2
ctg1294
zKp74B2
BX571708.4
finished
50 DKEYP-82B3
ctg1294
zKp82B3
BX510330.20
finished
51 CH211-123E19
ctg1294
zC123E19
CR932397.9
finished
52 CH211-89M19
ctg1294
zC89M19
BX004832.9
finished
53 DKEY-205N7
ctg1294
zK205N7
BX571838.9
finished
  GAP (type-3) length unknown    
55 CH211-18J22
ctg1303
zC18J22
BX510912.4
finished
  GAP (type-3) length unknown    
57 CH211-233P10
ctg1304
zC233P10
BX248401.10
finished
  GAP (type-3) length unknown    
59 DKEY-78I1
ctg1319
zK78I1
BX908769.7
finished
  GAP (type-3) length unknown    
61 CH211-154O2
ctg1325
zC154O2
AL772141.7
finished
62 DKEY-175H14
ctg1325
zK175H14
BX914217.19
finished
  GAP (type-3) length unknown    
64 DKEY-36K12
ctg1331
zK36K12
CT573412.5
finished
  GAP (type-3) length unknown    
66 CH73-356N7
ctg1332
zH356N7
CR936197.4
finished
  GAP (type-3) length unknown    
68 CH211-180B2
ctg1335
zC180B2
AL935136.4
finished
69 DKEY-227L18
ctg1335
zK227L18
BX546476.7
finished
70 DKEY-65F8
ctg1335
zK65F8
BX890597.13
finished
71 DKEYP-78B11
ctg1335
zKp78B11
CR762494.6
finished
72 CH211-199I23
ctg1335
zC199I23
BX897719.9
finished
73 DKEY-237M7
ctg1335
zK237M7
BX324175.6
finished
74 CH211-134O13
ctg1335
zC134O13
BX324180.4
finished
75 DKEY-10M1
ctg1335
zK10M1
BX247881.6
finished
76 CH211-286F20
ctg1335
zC286F20
BX649460.11
finished
77 DKEY-208L2
ctg1335
zK208L2
CR376765.12
finished
78 DKEY-238F11
ctg1335
zK238F11
CR759869.14
finished
79 CH211-273O22
ctg1335
zC273O22
CR407599.9
finished
80 DKEYP-100B9
ctg1335
zKp100B9
CR354440.22
finished
  GAP (type-3) length unknown    
82 CH211-204E6
ctg1340
zC204E6
CR352299.11
finished
83 CH211-223M9
ctg1340
zC223M9
BX247872.12
finished
  GAP (type-3) length unknown    
85 CH211-93I23
ctg1342
zC93I23
AL935031.12
finished
  GAP (type-3) length unknown    
87 RP71-81M21
ctg1345
bZ81M21
BX510302.7
finished
88 DKEY-175B17
ctg1345
zK175B17
CR450739.19
finished
  GAP (type-3) length unknown    
90 DKEY-221K19
ctg2518
zK221K19
BX072530.5
finished
  GAP (type-3) length unknown    
92 CH211-129F7
ctg2650
zC129F7
CR854857.19
finished
  GAP (type-3) length unknown    
94 CH211-252L12
ctg2823
zC252L12
CR847948.16
finished
  GAP (type-3) length unknown    
96 CH211-267P9
ctg3567
zC267P9
BX276091.6
finished
  GAP (type-3) length unknown    
98 CH73-60O3
ctg47
zH60O3
FQ323159.1
contiguous
  GAP (type-3) length unknown    
100 DKEY-184A17
ctg5020
zK184A17
BX511188.7
finished
  GAP (type-3) length unknown    
102 CH1073-322F24
ctg53
zFD322F24

-
  GAP (type-3) length unknown    
104 CH211-5G9
ctg6065
zC5G9
CU179646.5
finished
  GAP (type-3) length unknown    
106 DKEY-189H14
ctg6609
zK189H14
CR631123.6
finished
107 DKEY-8J20
ctg6609
zK8J20
BX927217.5
finished
108 CH211-197O22
ctg6609
zC197O22
BX927292.6
finished
  GAP (type-3) length unknown    
110 DKEY-1N3
ctg542_1
zK1N3
CR769785.19
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 145294 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR354539.13 1 145294 +
145295 195294 2 N 50000 contig no
195295 376836 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX248117.9 1 181542 +
376837 426836 4 N 50000 contig no
426837 604496 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX276188.11 1 177660 +
604497 654496 6 N 50000 contig no
654497 796753 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX005151.5 1 142257 +
796754 846753 8 N 50000 contig no
846754 979606 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CR759811.8 1 132853 +
979607 1029606 10 N 50000 contig no
1029607 1210793 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 BX284621.6 1 181187 +
1210794 1287005 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 CR932440.7 2001 78212 -
1287006 1442916 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL935298.5 1 155911 +
1442917 1447916 14 N 5000 No overlap in database    
1447917 1673420 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AL954180.6 1 225504 +
1673421 1723420 16 N 50000 contig no
1723421 1930329 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX004975.9 2001 208909 -
1930330 1954787 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX005063.7 1 24458 -
1954788 2176559 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AL845307.30 1 221772 -
2176560 2335363 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX001022.9 1 158804 -
2335364 2385363 21 N 50000 contig no
2385364 2535262 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CR352233.9 1 149899 +
2535263 2585262 23 N 50000 contig no
2585263 2768120 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AL954358.5 1 182858 +
2768121 2818120 25 N 50000 contig no
2818121 2962676 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 CU137726.6 1 144556 +
2962677 3012676 27 N 50000 contig no
3012677 3076634 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 CR931960.12 1 63958 +
3076635 3338483 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 BX928754.9 2001 263849 +
3338484 3407708 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 BX927129.10 85267 154491 +
3407709 3683748 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 AL954847.17 2001 278040 +
3683749 3733748 32 N 50000 contig no
3733749 3820159 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 CR762461.7 1 86411 +
3820160 4000232 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 BX119973.7 2001 182073 +
4000233 4002226 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 CR853301.6 2001 3994 +
4002227 4170149 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 CR382339.9 2001 169923 +
4170150 4175149 37 N 5000 No overlap in database    
4175150 4224459 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 CR925838.4 1 49310 +
4224460 4391569 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 BX005193.17 1 167110 -
4391570 4441569 40 N 50000 contig no
4441570 4665689 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 BX572080.18 1 224120 +
4665690 4810649 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 CR759945.8 2001 146960 +
4810650 4860649 43 N 50000 contig no
4860650 5038946 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CR762482.6 1 178297 +
5038947 5043946 45 N 5000 No overlap in database    
5043947 5187886 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR788242.3 1 143940 +
5187887 5198952 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR788284.8 2001 13066 +
5198953 5406749 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX072573.5 1 207797 -
5406750 5411749 49 N 5000 No overlap in database    
5411750 5568811 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 AL929492.6 1 157062 +
5568812 5573811 51 N 5000 No overlap in database    
5573812 5757567 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 BX284700.13 1 183756 +
5757568 5807567 53 N 50000 contig no
5807568 6000764 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX571708.4 1 193197 +
6000765 6095651 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX510330.20 2001 96887 +
6095652 6267476 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 CR932397.9 1 171825 -
6267477 6272476 57 N 5000 No overlap in database    
6272477 6463428 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 59 BX004832.9 1 190952 -
6463429 6585826 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 59 BX571838.9 2001 124398 +
6585827 6635826 60 N 50000 contig no
6635827 6825036 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 BX510912.4 1 189210 +
6825037 6875036 62 N 50000 contig no
6875037 7019910 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 BX248401.10 1 144874 +
7019911 7069910 64 N 50000 contig no
7069911 7138004 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 BX908769.7 1 68094 +
7138005 7188004 66 N 50000 contig no
7188005 7338432 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 68 AL772141.7 1 150428 -
7338433 7470413 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 68 BX914217.19 2001 133981 +
7470414 7520413 69 N 50000 contig no
7520414 7691804 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 CT573412.5 1 171391 +
7691805 7741804 71 N 50000 contig no
7741805 7745533 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 CR936197.4 1 3729 +
7745534 7795533 73 N 50000 contig no
7795534 7942245 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 AL935136.4 1 146712 -
7942246 7965502 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 BX546476.7 2001 25257 +
7965503 8208281 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 BX890597.13 2001 244779 +
8208282 8213281 77 N 5000 No overlap in database    
8213282 8217275 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 CR762494.6 1 3994 +
8217276 8431682 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX897719.9 2001 216407 +
8431683 8652561 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX324175.6 2001 222879 +
8652562 8668459 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX324180.4 120827 136724 +
8668460 8885841 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX247881.6 2001 219382 +
8885842 8963432 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX649460.11 1 77591 -
8963433 9095880 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 CR376765.12 2001 134448 +
9095881 9100880 85 N 5000 No overlap in database    
9100881 9383643 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CR759869.14 2001 284763 -
9383644 9416180 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CR407599.9 1 32537 -
9416181 9569203 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CR354440.22 2001 155023 +
9569204 9619203 89 N 50000 contig no
9619204 9740030 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 91 CR352299.11 1 120827 +
9740031 9937903 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 91 BX247872.12 2001 199873 +
9937904 9987903 92 N 50000 contig no
9987904 10166360 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 AL935031.12 1 178457 +
10166361 10216360 94 N 50000 contig no
10216361 10372127 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 BX510302.7 1 155767 +
10372128 10377127 96 N 5000 No overlap in database    
10377128 10558022 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 CR450739.19 1 180895 +
10558023 10608022 98 N 50000 contig no
10608023 10775031 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 BX072530.5 1 167009 +
10775032 10825031 100 N 50000 contig no
10825032 10995110 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 101 CR854857.19 1 170079 +
10995111 11045110 102 N 50000 contig no
11045111 11214056 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 103 CR847948.16 1 168946 +
11214057 11264056 104 N 50000 contig no
11264057 11398668 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 105 - 105 BX276091.6 1 134612 +
11398669 11448668 106 N 50000 contig no
11448669 11532327 107 A FQ323159.1 1 83659 +
11532328 11582327 108 N 50000 contig no
11582328 11815852 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 109 BX511188.7 1 233525 +
11815853 11865852 110 N 50000 contig no
11865853 11915852 111 N 50000 clone no
11915853 11965852 112 N 50000 contig no
11965853 12135253 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 113 CU179646.5 1 169401 +
12135254 12185253 114 N 50000 contig no
12185254 12323772 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 116 CR631123.6 1 138519 -
12323773 12332236 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 116 BX927217.5 1 8464 -
12332237 12337236 117 N 5000 No overlap in database    
12337237 12532242 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 118 BX927292.6 1 195006 +
12532243 12582242 119 N 50000 contig no
12582243 12814410 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 120 CR769785.19 1 232168 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
34
Gap types
type-3
34
Total clones
76
Clone HTGS Phases
contiguous
1
finished
74
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH1073-322F24 (project unknown)

Overlap Summary

Total overlap length of fin clones
375,488
Total finished length of fin clones w/ overlap
11,305,905
Total finished length of fin clones w/o overlap
10,930,417
Total overlap length of fin+unfin clones
375,488
Total finished length of fin+unfin clones w/ overlap
11,389,564
Total finished length of fin+unfin clones w/o overlap
11,014,076

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Other links

* quick link - http://q.sanger.ac.uk/4writoen