ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_13 (TPF updated: 2013-12-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH211-250O1
ctg1246
zC250O1
EPN details
CR354539.13
finished
  GAP (type-3) length unknown    
3 CH211-226D5
ctg1254
zC226D5
EPN details
BX248117.9
finished
  GAP (type-3) length unknown    
5 CH211-245A19
ctg1256
zC245A19
EPN details
BX276188.11
finished
  GAP (type-3) length unknown    
7 CH211-11M20
ctg1259
zC11M20
EPN details
BX005151.5
finished
  GAP (type-3) length unknown    
9 CH211-190M18
ctg1260
zC190M18
EPN details
CR759811.8
finished
  GAP (type-3) length unknown    
11 CH211-207N6
ctg1269
zC207N6
EPN details
BX284621.6
finished
12 CH211-247J17
ctg1269
zC247J17
EPN details
CR932440.7
finished
13 CH211-160I12
ctg1269
zC160I12
EPN details
AL935298.5
finished
14 CH211-222A10
ctg1269
zC222A10
EPN details
AL954180.6
finished
  GAP (type-3) length unknown    
16 DKEY-14B16
ctg1272
zK14B16
EPN details
BX004975.9
finished
17 CH211-101D12
ctg1272
zC101D12
EPN details
BX005063.7
finished
18 DKEY-56N17
ctg1272
zK56N17
EPN details
AL845307.30
finished
19 CH211-243O19
ctg1272
zC243O19
EPN details
BX001022.9
finished
  GAP (type-3) length unknown    
21 CH211-193J5
ctg1273
zC193J5
EPN details
CR352233.9
finished
  GAP (type-3) length unknown    
23 CH211-226D12
ctg1276
zC226D12
EPN details
AL954358.5
finished
  GAP (type-3) length unknown    
25 DKEY-250D11
ctg1280
zK250D11
EPN details
CU137726.6
finished
  GAP (type-3) length unknown    
27 CH211-224B17
ctg1282
zC224B17
EPN details
CR931960.12
finished
28 DKEY-169I10
ctg1282
zK169I10
EPN details
BX928754.9
finished
29 DKEY-158N21
ctg1282
zK158N21
EPN details
BX927129.10
finished
30 DKEY-68G8
ctg1282
zK68G8
EPN details
AL954847.17
finished
  GAP (type-3) length unknown    
32 DKEY-32H6
ctg1284
zK32H6
EPN details
CR762461.7
finished
33 RP71-77D7
ctg1284
bZ77D7
EPN details
BX119973.7
finished
34 CH211-88G8
ctg1284
zC88G8
EPN details
CR853301.6
finished
35 CH211-129E5
ctg1284
zC129E5
EPN details
CR382339.9
finished
36 CH211-182M16
ctg1284
zC182M16
EPN details
CR925838.4
finished
37 CH211-146M5
ctg1284
zC146M5
EPN details
BX005193.17
finished
  GAP (type-3) length unknown    
39 DKEY-22N17
ctg1287
zK22N17
EPN details
BX572080.18
finished
40 CH211-167E4
ctg1287
zC167E4
EPN details
CR759945.8
finished
  GAP (type-3) length unknown    
42 DKEY-237N21
ctg1290
zK237N21
EPN details
CR762482.6
finished
43 DKEY-239H16
ctg1290
zK239H16
EPN details
CR788242.3
finished
44 DKEYP-13C1
ctg1290
zKp13C1
EPN details
CR788284.8
finished
45 DKEY-16I6
ctg1290
zK16I6
EPN details
BX072573.5
finished
46 CH211-155K1
ctg1290
zC155K1
EPN details
AL929492.6
finished
47 CH211-269O12
ctg1290
zC269O12
EPN details
BX284700.13
finished
  GAP (type-3) length unknown    
49 DKEYP-74B2
ctg1294
zKp74B2
EPN details
BX571708.4
finished
50 DKEYP-82B3
ctg1294
zKp82B3
EPN details
BX510330.20
finished
51 CH211-123E19
ctg1294
zC123E19
EPN details
CR932397.9
finished
52 CH211-89M19
ctg1294
zC89M19
EPN details
BX004832.9
finished
53 DKEY-205N7
ctg1294
zK205N7
EPN details
BX571838.9
finished
  GAP (type-3) length unknown    
55 CH211-18J22
ctg1303
zC18J22
EPN details
BX510912.4
finished
  GAP (type-3) length unknown    
57 CH211-233P10
ctg1304
zC233P10
EPN details
BX248401.10
finished
  GAP (type-3) length unknown    
59 DKEY-78I1
ctg1319
zK78I1
EPN details
BX908769.7
finished
  GAP (type-3) length unknown    
61 CH211-154O2
ctg1325
zC154O2
EPN details
AL772141.7
finished
62 DKEY-175H14
ctg1325
zK175H14
EPN details
BX914217.19
finished
  GAP (type-3) length unknown    
64 DKEY-36K12
ctg1331
zK36K12
EPN details
CT573412.5
finished
  GAP (type-3) length unknown    
66 CH73-356N7
ctg1332
zH356N7
EPN details
CR936197.4
finished
  GAP (type-3) length unknown    
68 CH211-180B2
ctg1335
zC180B2
EPN details
AL935136.4
finished
69 DKEY-227L18
ctg1335
zK227L18
EPN details
BX546476.7
finished
70 DKEY-65F8
ctg1335
zK65F8
EPN details
BX890597.13
finished
71 DKEYP-78B11
ctg1335
zKp78B11
EPN details
CR762494.6
finished
72 CH211-199I23
ctg1335
zC199I23
EPN details
BX897719.9
finished
73 DKEY-237M7
ctg1335
zK237M7
EPN details
BX324175.6
finished
74 CH211-134O13
ctg1335
zC134O13
EPN details
BX324180.4
finished
75 DKEY-10M1
ctg1335
zK10M1
EPN details
BX247881.6
finished
76 CH211-286F20
ctg1335
zC286F20
EPN details
BX649460.11
finished
77 DKEY-208L2
ctg1335
zK208L2
EPN details
CR376765.12
finished
78 DKEY-238F11
ctg1335
zK238F11
EPN details
CR759869.14
finished
79 CH211-273O22
ctg1335
zC273O22
EPN details
CR407599.9
finished
80 DKEYP-100B9
ctg1335
zKp100B9
EPN details
CR354440.22
finished
  GAP (type-3) length unknown    
82 CH211-204E6
ctg1340
zC204E6
EPN details
CR352299.11
finished
83 CH211-223M9
ctg1340
zC223M9
EPN details
BX247872.12
finished
  GAP (type-3) length unknown    
85 CH211-93I23
ctg1342
zC93I23
EPN details
AL935031.12
finished
  GAP (type-3) length unknown    
87 RP71-81M21
ctg1345
bZ81M21
EPN details
BX510302.7
finished
88 DKEY-175B17
ctg1345
zK175B17
EPN details
CR450739.19
finished
  GAP (type-3) length unknown    
90 DKEY-221K19
ctg2518
zK221K19
EPN details
BX072530.5
finished
  GAP (type-3) length unknown    
92 CH211-129F7
ctg2650
zC129F7
EPN details
CR854857.19
finished
  GAP (type-3) length unknown    
94 CH211-252L12
ctg2823
zC252L12
EPN details
CR847948.16
finished
  GAP (type-3) length unknown    
96 CH211-267P9
ctg3567
zC267P9
EPN details
BX276091.6
finished
  GAP (type-3) length unknown    
98 CH73-60O3
ctg47
zH60O3
EPN details
FQ323159.1
contiguous
  GAP (type-3) length unknown    
100 DKEY-184A17
ctg5020
zK184A17
EPN details
BX511188.7
finished
  GAP (type-3) length unknown    
102 CH1073-322F24
ctg53
zFD322F24
EPN details

-
  GAP (type-3) length unknown    
104 CH211-5G9
ctg6065
zC5G9
EPN details
CU179646.5
finished
  GAP (type-3) length unknown    
106 DKEY-189H14
ctg6609
zK189H14
EPN details
CR631123.6
finished
107 DKEY-8J20
ctg6609
zK8J20
EPN details
BX927217.5
finished
108 CH211-197O22
ctg6609
zC197O22
EPN details
BX927292.6
finished
  GAP (type-3) length unknown    
110 DKEY-1N3
ctg542_1
zK1N3
EPN details
CR769785.19
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 145294 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR354539.13 1 145294 +
145295 195294 2 N 50000 contig no
195295 376836 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX248117.9 1 181542 +
376837 426836 4 N 50000 contig no
426837 604496 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX276188.11 1 177660 +
604497 654496 6 N 50000 contig no
654497 796753 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX005151.5 1 142257 +
796754 846753 8 N 50000 contig no
846754 979606 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CR759811.8 1 132853 +
979607 1029606 10 N 50000 contig no
1029607 1210793 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 BX284621.6 1 181187 +
1210794 1287005 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 CR932440.7 2001 78212 -
1287006 1442916 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL935298.5 1 155911 +
1442917 1447916 14 N 5000 No overlap in database    
1447917 1673420 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AL954180.6 1 225504 +
1673421 1723420 16 N 50000 contig no
1723421 1930329 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX004975.9 2001 208909 -
1930330 1954787 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX005063.7 1 24458 -
1954788 2176559 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 AL845307.30 1 221772 -
2176560 2335363 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 20 BX001022.9 1 158804 -
2335364 2385363 21 N 50000 contig no
2385364 2535262 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CR352233.9 1 149899 +
2535263 2585262 23 N 50000 contig no
2585263 2768120 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AL954358.5 1 182858 +
2768121 2818120 25 N 50000 contig no
2818121 2962676 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 CU137726.6 1 144556 +
2962677 3012676 27 N 50000 contig no
3012677 3076634 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 CR931960.12 1 63958 +
3076635 3338483 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 BX928754.9 2001 263849 +
3338484 3407708 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 BX927129.10 85267 154491 +
3407709 3683748 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 31 AL954847.17 2001 278040 +
3683749 3733748 32 N 50000 contig no
3733749 3820159 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 CR762461.7 1 86411 +
3820160 4000232 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 BX119973.7 2001 182073 +
4000233 4002226 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 CR853301.6 2001 3994 +
4002227 4170149 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 36 CR382339.9 2001 169923 +
4170150 4175149 37 N 5000 No overlap in database    
4175150 4224459 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 CR925838.4 1 49310 +
4224460 4391569 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 BX005193.17 1 167110 -
4391570 4441569 40 N 50000 contig no
4441570 4665689 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 BX572080.18 1 224120 +
4665690 4810649 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 CR759945.8 2001 146960 +
4810650 4860649 43 N 50000 contig no
4860650 5038946 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CR762482.6 1 178297 +
5038947 5043946 45 N 5000 No overlap in database    
5043947 5187886 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR788242.3 1 143940 +
5187887 5198952 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR788284.8 2001 13066 +
5198953 5406749 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX072573.5 1 207797 -
5406750 5411749 49 N 5000 No overlap in database    
5411750 5568811 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 AL929492.6 1 157062 +
5568812 5573811 51 N 5000 No overlap in database    
5573812 5757567 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 BX284700.13 1 183756 +
5757568 5807567 53 N 50000 contig no
5807568 6000764 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX571708.4 1 193197 +
6000765 6095651 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 BX510330.20 2001 96887 +
6095652 6267476 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 56 CR932397.9 1 171825 -
6267477 6272476 57 N 5000 No overlap in database    
6272477 6463428 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 59 BX004832.9 1 190952 -
6463429 6585826 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 59 BX571838.9 2001 124398 +
6585827 6635826 60 N 50000 contig no
6635827 6825036 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 BX510912.4 1 189210 +
6825037 6875036 62 N 50000 contig no
6875037 7019910 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 BX248401.10 1 144874 +
7019911 7069910 64 N 50000 contig no
7069911 7138004 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 BX908769.7 1 68094 +
7138005 7188004 66 N 50000 contig no
7188005 7338432 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 68 AL772141.7 1 150428 -
7338433 7470413 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 68 BX914217.19 2001 133981 +
7470414 7520413 69 N 50000 contig no
7520414 7691804 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 CT573412.5 1 171391 +
7691805 7741804 71 N 50000 contig no
7741805 7745533 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 CR936197.4 1 3729 +
7745534 7795533 73 N 50000 contig no
7795534 7942245 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 AL935136.4 1 146712 -
7942246 7965502 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 BX546476.7 2001 25257 +
7965503 8208281 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 76 BX890597.13 2001 244779 +
8208282 8213281 77 N 5000 No overlap in database    
8213282 8217275 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 CR762494.6 1 3994 +
8217276 8431682 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX897719.9 2001 216407 +
8431683 8652561 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX324175.6 2001 222879 +
8652562 8668459 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX324180.4 120827 136724 +
8668460 8885841 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX247881.6 2001 219382 +
8885842 8963432 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 BX649460.11 1 77591 -
8963433 9095880 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 78 - 84 CR376765.12 2001 134448 +
9095881 9100880 85 N 5000 No overlap in database    
9100881 9383643 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CR759869.14 2001 284763 -
9383644 9416180 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CR407599.9 1 32537 -
9416181 9569203 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 88 CR354440.22 2001 155023 +
9569204 9619203 89 N 50000 contig no
9619204 9740030 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 91 CR352299.11 1 120827 +
9740031 9937903 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 91 BX247872.12 2001 199873 +
9937904 9987903 92 N 50000 contig no
9987904 10166360 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 AL935031.12 1 178457 +
10166361 10216360 94 N 50000 contig no
10216361 10372127 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 BX510302.7 1 155767 +
10372128 10377127 96 N 5000 No overlap in database    
10377128 10558022 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 CR450739.19 1 180895 +
10558023 10608022 98 N 50000 contig no
10608023 10775031 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 BX072530.5 1 167009 +
10775032 10825031 100 N 50000 contig no
10825032 10995110 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 101 CR854857.19 1 170079 +
10995111 11045110 102 N 50000 contig no
11045111 11214056 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 103 CR847948.16 1 168946 +
11214057 11264056 104 N 50000 contig no
11264057 11398668 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 105 - 105 BX276091.6 1 134612 +
11398669 11448668 106 N 50000 contig no
11448669 11532327 107 A FQ323159.1 1 83659 +
11532328 11582327 108 N 50000 contig no
11582328 11815852 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 109 BX511188.7 1 233525 +
11815853 11865852 110 N 50000 contig no
11865853 11915852 111 N 50000 clone no
11915853 11965852 112 N 50000 contig no
11965853 12135253 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 113 CU179646.5 1 169401 +
12135254 12185253 114 N 50000 contig no
12185254 12323772 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 116 CR631123.6 1 138519 -
12323773 12332236 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 115 - 116 BX927217.5 1 8464 -
12332237 12337236 117 N 5000 No overlap in database    
12337237 12532242 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 118 BX927292.6 1 195006 +
12532243 12582242 119 N 50000 contig no
12582243 12814410 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 120 CR769785.19 1 232168 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-250O1
ctg1246
zC250O1
EPN details
Analysed
19-MAR-05
CR354539.13
finished
145294 CHORI-211        
  GAP (type-3) length unknown                  
3 CH211-226D5
ctg1254
zC226D5
EPN details
Analysed
21-APR-04
BX248117.9
finished
181542 CHORI-211        
  GAP (type-3) length unknown                  
5 CH211-245A19
ctg1256
zC245A19
EPN details
Analysed
19-MAY-04
BX276188.11
finished
177660 CHORI-211        
  GAP (type-3) length unknown                  
7 CH211-11M20
ctg1259
zC11M20
EPN details
Analysed
22-JAN-04
BX005151.5
finished
142257 CHORI-211        
  GAP (type-3) length unknown                  
9 CH211-190M18
ctg1260
zC190M18
EPN details
Analysed
18-MAR-05
CR759811.8
finished
132853 CHORI-211        
  GAP (type-3) length unknown                  
11 CH211-207N6
ctg1269
zC207N6
EPN details
Analysed
16-APR-04
BX284621.6
finished
217722 CHORI-211 3' / 3'
181187 / 78212
- / -
36834
0.0699999999999998
Identified
2010-07-06
find_overl...
humpub
 
12 CH211-247J17
ctg1269
zC247J17
EPN details
Analysed
02-JUN-05
CR932440.7
finished
78212 CHORI-211 5' / 5'
2001 / 1
- / -
2000
0
Identified
2005-03-25
find_overl...
badger
 
13 CH211-160I12
ctg1269
zC160I12
EPN details
Analysed
10-JUL-03
AL935298.5
finished
155911 CHORI-211        
14 CH211-222A10
ctg1269
zC222A10
EPN details
Analysed
11-NOV-03
AL954180.6
finished
225504 CHORI-211        
  GAP (type-3) length unknown                  
16 DKEY-14B16
ctg1272
zK14B16
EPN details
Analysed
17-NOV-03
BX004975.9
finished
208909 DanioKey 5' / 3'
2001 / 24458
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
17 CH211-101D12
ctg1272
zC101D12
EPN details
Analysed
20-JUN-03
BX005063.7
finished
24458 CHORI-211 5' / 3'
1 / 221772
- / -
2000
0
Identified
2007-02-24
find_overl...
badger
 
18 DKEY-56N17
ctg1272
zK56N17
EPN details
Analysed
16-FEB-07
AL845307.30
finished
223772 DanioKey 5' / 3'
1 / 158804
- / -
2000
0
Identified
2007-02-24
find_overl...
badger
 
19 CH211-243O19
ctg1272
zC243O19
EPN details
Submitted to EMBL
12-JAN-09
BX001022.9
finished
160804 CHORI-211        
  GAP (type-3) length unknown                  
21 CH211-193J5
ctg1273
zC193J5
EPN details
Analysed
12-MAY-05
CR352233.9
finished
149899 CHORI-211        
  GAP (type-3) length unknown                  
23 CH211-226D12
ctg1276
zC226D12
EPN details
Analysed
21-AUG-03
AL954358.5
finished
182858 CHORI-211        
  GAP (type-3) length unknown                  
25 DKEY-250D11
ctg1280
zK250D11
EPN details
Analysed
09-AUG-07
CU137726.6
finished
144556 DanioKey        
  GAP (type-3) length unknown                  
27 CH211-224B17
ctg1282
zC224B17
EPN details
Analysed
06-JUN-05
CR931960.12
finished
63958 CHORI-211 3' / 5'
63958 / 2001
- / -
2000
0
Commented
2006-09-11
edit_overl...
hr1
 
28 DKEY-169I10
ctg1282
zK169I10
EPN details
Analysed
27-NOV-04
BX928754.9
finished
263849 DanioKey 3' / 5'
263849 / 85267
- / -
85266
0
Identified
2005-05-07
find_overl...
badger
 
29 DKEY-158N21
ctg1282
zK158N21
EPN details
Analysed
08-DEC-04
BX927129.10
finished
154491 DanioKey 3' / 5'
154491 / 2001
- / -
2000
0
Identified
2004-11-19
find_overl...
badger
 
30 DKEY-68G8
ctg1282
zK68G8
EPN details
Analysed
18-JAN-04
AL954847.17
finished
278040 DanioKey        
  GAP (type-3) length unknown                  
32 DKEY-32H6
ctg1284
zK32H6
EPN details
Analysed
21-JAN-05
CR762461.7
finished
86411 DanioKey 3' / 5'
86411 / 2001
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
33 RP71-77D7
ctg1284
bZ77D7
EPN details
Submitted to EMBL
12-JAN-09
BX119973.7
finished
182073 RPCI-71 3' / 5'
182073 / 2001
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
34 CH211-88G8
ctg1284
zC88G8
EPN details
Analysed
11-FEB-05
CR853301.6
finished
3994 CHORI-211 3' / 5'
3994 / 2001
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
35 CH211-129E5
ctg1284
zC129E5
EPN details
Analysed
14-JAN-05
CR382339.9
finished
169923 CHORI-211        
36 CH211-182M16
ctg1284
zC182M16
EPN details
Analysed
17-MAY-05
CR925838.4
finished
49310 CHORI-211 3' / 3'
49310 / 167110
- / -
2000
0
Identified
2005-03-04
find_overl...
badger
 
37 CH211-146M5
ctg1284
zC146M5
EPN details
Submitted to EMBL
12-JAN-09
BX005193.17
finished
169110 CHORI-211        
  GAP (type-3) length unknown                  
39 DKEY-22N17
ctg1287
zK22N17
EPN details
Analysed
31-MAR-06
BX572080.18
finished
224120 DanioKey 3' / 5'
224120 / 2001
- / -
2000
0
Identified
2006-04-04
find_overl...
badger
 
40 CH211-167E4
ctg1287
zC167E4
EPN details
Analysed
20-SEP-05
CR759945.8
finished
146960 CHORI-211        
  GAP (type-3) length unknown                  
42 DKEY-237N21
ctg1290
zK237N21
EPN details
Analysed
05-JAN-05
CR762482.6
finished
178297 DanioKey        
43 DKEY-239H16
ctg1290
zK239H16
EPN details
Analysed
15-DEC-04
CR788242.3
finished
143940 DanioKey 3' / 5'
143940 / 2001
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
44 DKEYP-13C1
ctg1290
zKp13C1
EPN details
Analysed
05-MAR-05
CR788284.8
finished
91593 DanioKeypilot 3' / 3'
13066 / 207797
- / -
78528
0
Identified
2005-01-15
find_overl...
badger
 
45 DKEY-16I6
ctg1290
zK16I6
EPN details
Analysed
04-FEB-04
BX072573.5
finished
207797 DanioKey        
46 CH211-155K1
ctg1290
zC155K1
EPN details
Analysed
12-JUL-03
AL929492.6
finished
157062 CHORI-211        
47 CH211-269O12
ctg1290
zC269O12
EPN details
Analysed
07-JUN-05
BX284700.13
finished
183756 CHORI-211        
  GAP (type-3) length unknown                  
49 DKEYP-74B2
ctg1294
zKp74B2
EPN details
Analysed
15-OCT-04
BX571708.4
finished
193197 DanioKeypilot 3' / 5'
193197 / 2001
- / -
2000
0
Identified
2005-11-22
find_overl...
badger
 
50 DKEYP-82B3
ctg1294
zKp82B3
EPN details
Analysed
19-NOV-05
BX510330.20
finished
96887 DanioKeypilot 3' / 3'
96887 / 171825
- / -
2000
0
Identified
2005-11-22
find_overl...
badger
 
51 CH211-123E19
ctg1294
zC123E19
EPN details
Analysed
06-JUN-05
CR932397.9
finished
173825 CHORI-211        
52 CH211-89M19
ctg1294
zC89M19
EPN details
Analysed
25-NOV-03
BX004832.9
finished
190952 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
53 DKEY-205N7
ctg1294
zK205N7
EPN details
Analysed
03-FEB-05
BX571838.9
finished
124398 DanioKey        
  GAP (type-3) length unknown                  
55 CH211-18J22
ctg1303
zC18J22
EPN details
Analysed
06-APR-04
BX510912.4
finished
189210 CHORI-211        
  GAP (type-3) length unknown                  
57 CH211-233P10
ctg1304
zC233P10
EPN details
Analysed
24-MAR-04
BX248401.10
finished
144874 CHORI-211        
  GAP (type-3) length unknown                  
59 DKEY-78I1
ctg1319
zK78I1
EPN details
Submitted to EMBL
12-JAN-09
BX908769.7
finished
68094 DanioKey        
  GAP (type-3) length unknown                  
61 CH211-154O2
ctg1325
zC154O2
EPN details
Analysed
07-AUG-04
AL772141.7
finished
150428 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2004-10-01
find_overl...
badger
 
62 DKEY-175H14
ctg1325
zK175H14
EPN details
Analysed
05-NOV-04
BX914217.19
finished
133981 DanioKey        
  GAP (type-3) length unknown                  
64 DKEY-36K12
ctg1331
zK36K12
EPN details
Analysed
13-APR-07
CT573412.5
finished
171391 DanioKey        
  GAP (type-3) length unknown                  
66 CH73-356N7
ctg1332
zH356N7
EPN details
Analysed
09-JUN-05
CR936197.4
finished
3729 CHORI-73        
  GAP (type-3) length unknown                  
68 CH211-180B2
ctg1335
zC180B2
EPN details
Analysed
27-JUN-03
AL935136.4
finished
146712 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2004-03-27
find_overl...
badger
 
69 DKEY-227L18
ctg1335
zK227L18
EPN details
Analysed
31-MAR-04
BX546476.7
finished
25257 DanioKey 3' / 5'
25257 / 2001
- / -
2000
0
Identified
2004-08-22
find_overl...
badger
 
70 DKEY-65F8
ctg1335
zK65F8
EPN details
Analysed
12-JUL-05
BX890597.13
finished
244779 DanioKey        
71 DKEYP-78B11
ctg1335
zKp78B11
EPN details
Analysed
29-JAN-05
CR762494.6
finished
3994 DanioKeypilot 3' / 5'
3994 / 2001
- / -
2000
0
Identified
2006-02-17
find_overl...
gjc
 
72 CH211-199I23
ctg1335
zC199I23
EPN details
Analysed
07-FEB-06
BX897719.9
finished
216407 CHORI-211 3' / 5'
216407 / 2001
- / -
2000
0
Identified
2006-02-17
find_overl...
gjc
 
73 DKEY-237M7
ctg1335
zK237M7
EPN details
Analysed
27-SEP-03
BX324175.6
finished
222879 DanioKey 3' / 5'
222879 / 120827
- / -
120860
0.03
Identified
2003-10-03
find_overl...
badger
 
74 CH211-134O13
ctg1335
zC134O13
EPN details
Analysed
30-SEP-03
BX324180.4
finished
136724 CHORI-211 3' / 5'
136724 / 2001
- / -
2000
0
Identified
2003-08-29
find_overl...
badger
 
75 DKEY-10M1
ctg1335
zK10M1
EPN details
Analysed
05-NOV-03
BX247881.6
finished
219382 DanioKey 3' / 3'
219382 / 77591
- / -
2000
0
Identified
2004-12-05
find_overl...
badger
 
76 CH211-286F20
ctg1335
zC286F20
EPN details
Analysed
06-JAN-05
BX649460.11
finished
79591 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-04-01
find_overl...
badger
 
77 DKEY-208L2
ctg1335
zK208L2
EPN details
Analysed
03-JUN-05
CR376765.12
finished
134448 DanioKey        
78 DKEY-238F11
ctg1335
zK238F11
EPN details
Analysed
07-JUN-05
CR759869.14
finished
284763 DanioKey 5' / 3'
2001 / 32537
- / -
2000
0
Identified
2005-04-08
find_overl...
badger
 
79 CH211-273O22
ctg1335
zC273O22
EPN details
Analysed
06-APR-05
CR407599.9
finished
32537 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-11-17
find_overl...
badger
 
80 DKEYP-100B9
ctg1335
zKp100B9
EPN details
Analysed
16-NOV-05
CR354440.22
finished
155023 DanioKeypilot        
  GAP (type-3) length unknown                  
82 CH211-204E6
ctg1340
zC204E6
EPN details
Analysed
13-MAY-06
CR352299.11
finished
120827 CHORI-211 3' / 5'
120827 / 2001
- / -
2000
0
Identified
2006-05-13
find_overl...
badger
 
83 CH211-223M9
ctg1340
zC223M9
EPN details
Analysed
17-MAR-04
BX247872.12
finished
199873 CHORI-211        
  GAP (type-3) length unknown                  
85 CH211-93I23
ctg1342
zC93I23
EPN details
Analysed
13-AUG-04
AL935031.12
finished
178457 CHORI-211        
  GAP (type-3) length unknown                  
87 RP71-81M21
ctg1345
bZ81M21
EPN details
Analysed
24-AUG-04
BX510302.7
finished
155767 RPCI-71        
88 DKEY-175B17
ctg1345
zK175B17
EPN details
Analysed
14-JUL-05
CR450739.19
finished
180895 DanioKey        
  GAP (type-3) length unknown                  
90 DKEY-221K19
ctg2518
zK221K19
EPN details
Analysed
14-APR-04
BX072530.5
finished
167009 DanioKey        
  GAP (type-3) length unknown                  
92 CH211-129F7
ctg2650
zC129F7
EPN details
Analysed
30-NOV-05
CR854857.19
finished
170079 CHORI-211        
  GAP (type-3) length unknown                  
94 CH211-252L12
ctg2823
zC252L12
EPN details
Analysed
17-AUG-05
CR847948.16
finished
168946 CHORI-211        
  GAP (type-3) length unknown                  
96 CH211-267P9
ctg3567
zC267P9
EPN details
Analysed
21-FEB-04
BX276091.6
finished
134612 CHORI-211        
  GAP (type-3) length unknown                  
98 CH73-60O3
ctg47
zH60O3
EPN details
Cancelled
08-FEB-11
FQ323159.1
contiguous
83659 CHORI-73        
  GAP (type-3) length unknown                  
100 DKEY-184A17
ctg5020
zK184A17
EPN details
Analysed
10-NOV-05
BX511188.7
finished
233525 DanioKey        
  GAP (type-3) length unknown                  
102 CH1073-322F24
ctg53
zFD322F24
EPN details
Cancelled
11-JUL-11

-
- CHORI1073        
  GAP (type-3) length unknown                  
104 CH211-5G9
ctg6065
zC5G9
EPN details
Analysed
14-JUN-07
CU179646.5
finished
169401 CHORI-211        
  GAP (type-3) length unknown                  
106 DKEY-189H14
ctg6609
zK189H14
EPN details
Analysed
03-DEC-04
CR631123.6
finished
138519 DanioKey 5' / 3'
1 / 8464
- / -
2000
0
Identified
2004-12-04
find_overl...
badger
 
107 DKEY-8J20
ctg6609
zK8J20
EPN details
Analysed
30-NOV-04
BX927217.5
finished
10464 DanioKey        
108 CH211-197O22
ctg6609
zC197O22
EPN details
Analysed
09-MAR-05
BX927292.6
finished
195006 CHORI-211        
  GAP (type-3) length unknown                  
110 DKEY-1N3
ctg542_1
zK1N3
EPN details
Analysed
09-MAY-06
CR769785.19
finished
232168 DanioKey        

Statistics

Clone Summary

Number of gaps
34
Gap types
type-3
34
Total clones
76
Clone HTGS Phases
contiguous
1
finished
74
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH1073-322F24 (zFD322F24)

Overlap Summary

Total overlap length of fin clones
375,488
Total finished length of fin clones w/ overlap
11,305,905
Total finished length of fin clones w/o overlap
10,930,417
Total overlap length of fin+unfin clones
375,488
Total finished length of fin+unfin clones w/ overlap
11,389,564
Total finished length of fin+unfin clones w/o overlap
11,014,076

Search

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Other links

* quick link - http://q.sanger.ac.uk/4writoen