ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_12 (TPF updated: 2013-10-07)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DKEY-245H10
ctg1154
zK245H10
EPN details
CR788319.8
finished
  GAP (type-3) length unknown    
3 CH73-205C8
ctg1169
zH205C8
EPN details
CT971500.7
finished
4 DKEY-15G17
ctg1169
zK15G17
EPN details
CR392346.18
finished
  GAP (type-3) length unknown    
6 DKEYP-15D12
ctg1194
zKp15D12
EPN details
BX294659.9
finished
  GAP (type-3) length unknown    
8 CH211-148E17
ctg1203
zC148E17
EPN details
AL929467.6
finished
  GAP (type-3) length unknown    
10 CH211-208D15
ctg1207
zC208D15
EPN details
AL928692.9
finished
  GAP (type-3) length unknown    
12 CH211-205P19
ctg1214
zC205P19
EPN details
BX248394.5
finished
13 CH73-194F15
ctg1214
zH194F15
EPN details
CT963081.7
finished
14 CH211-242D13
ctg1214
zC242D13
EPN details
BX323027.8
finished
  GAP (type-3) length unknown    
16 CH211-234D4
ctg2986
zC234D4
EPN details
BX294660.18
finished
  GAP (type-3) length unknown    
18 DKEY-182M23
ctg3179
zK182M23
EPN details
CR846099.7
finished
  GAP (type-3) length unknown    
20 CH211-93M8
ctg4505
zC93M8
EPN details
AL929308.5
finished
  GAP (type-3) length unknown    
22 CH211-272L18
ctg4536
zC272L18
EPN details
BX510998.12
finished
  GAP (type-3) length unknown    
24 CH211-95G21
ctg6053
zC95G21
EPN details
BX323847.8
finished
25 DKEY-105C4
ctg6053
zK105C4
EPN details
BX548031.8
finished
26 CH211-235O5
ctg6053
zC235O5
EPN details
BX511090.8
finished
27 CH211-139C17
ctg6053
zC139C17
EPN details
BX927102.12
finished
28 CH211-157M7
ctg6053
zC157M7
EPN details
CR932365.10
finished
29 CH211-39L20
ctg6053
zC39L20
EPN details
BX511144.13
finished
30 DKEY-181N13
ctg6053
zK181N13
EPN details
BX511016.5
finished
  GAP (type-3) length unknown    
32 CH211-149G10
ctg6057
zC149G10
EPN details
CR354397.28
finished
  GAP (type-3) length unknown    
34 DKEY-150G9
ctg6060
zK150G9
EPN details
CR847495.11
finished
35 DKEY-42I13
ctg6060
zK42I13
EPN details
CR933764.6
finished
  GAP (type-3) length unknown    
37 DKEY-25C9
ctg6068
zK25C9
EPN details
CR925795.5
finished
  GAP (type-3) length unknown    
39 CH211-202P4
ctg6077
zC202P4
EPN details
BX465192.7
finished
40 DKEY-1M14
ctg6077
zK1M14
EPN details
CR354379.13
finished
41 CH211-209J18
ctg6077
zC209J18
EPN details
CR450820.5
finished
42 DKEY-271E14
ctg6077
zK271E14
EPN details
BX640506.12
finished
  GAP (type-3) length unknown    
44 CH211-158N13
ctg6086
zC158N13
EPN details
BX572075.8
finished
45 DKEY-208B10
ctg6086
zK208B10
EPN details
BX640407.9
finished
46 DKEY-69N5
ctg6086
zK69N5
EPN details
BX572076.4
finished
  GAP (type-3) length unknown    
48 DKEY-13J5
ctg6089
zK13J5
EPN details
CR933779.14
finished
49 CH211-151I13
ctg6089
zC151I13
EPN details
CT030015.6
finished
50 DKEY-103K21
ctg6089
Cl/Pr zK103K21/zK9L5 swap
EPN details
BX629347.20
finished
51 DKEY-17P16
ctg6089
zK17P16
EPN details
CR356224.5
finished
52 DKEY-29P4
ctg6089
zK29P4
EPN details
BX571974.6
finished
53 CH211-12I19
ctg6089
zC12I19
EPN details
CR925782.6
finished
54 CH211-87D13
ctg6089
zC87D13
EPN details
CT573274.3
unfinished
55 DKEY-7B6
ctg6089
zK7B6
EPN details
CR354584.8
finished
56 DKEY-14A21
ctg6089
zK14A21
EPN details
CR352235.8
finished
57 CH211-57E23
ctg6089
zC57E23
EPN details
BX323878.10
finished
  GAP (type-3) length unknown    
59 DKEYP-87A5
ctg6114
zKp87A5
EPN details
CR847789.8
finished
60 DKEY-21M21
ctg6114
zK21M21
EPN details
CR751564.10
finished
61 DKEY-76H5
ctg6114
zK76H5
EPN details
CT573008.1
unfinished
  GAP (type-3) length unknown    
63 CH211-284O17
ctg6170
zC284O17
EPN details
BX324004.6
finished
  GAP (type-3) length unknown    
65 CH211-178F18
ctg6172
zC178F18
EPN details
CT030183.9
finished
66 RP71-22K7
ctg6172
bZ22K7
EPN details
BX470069.10
finished
  GAP (type-3) length unknown    
68 CH211-130G10
ctg6182
zC130G10
EPN details
CU184877.6
finished
  GAP (type-3) length unknown    
70 CH211-94I18
ctg6252
zC94I18
EPN details
CT573275.14
finished
71 CH211-225H10
ctg6252
zC225H10
EPN details
CR450768.14
finished
72 CH211-153F13
ctg6252
zC153F13
EPN details
CR759788.7
finished
  GAP (type-3) length unknown    
74 CH211-212O10
ctg6354
zC212O10
EPN details
BX927252.5
finished
  GAP (type-3) length unknown    
76 CH211-14K18
ctg6358
zC14K18
EPN details
BX001032.12
finished
  GAP (type-3) length unknown    
78 DKEY-165L13
ctg6368
zK165L13
EPN details
CR847880.11
finished
79 CH211-203J1
ctg6368
zC203J1
EPN details
CR848035.7
finished
  GAP (type-3) length unknown    
81 CH211-142B9
ctg6382
zC142B9
EPN details
CR293525.10
finished
  GAP (type-3) length unknown    
83 CH211-157P16
ctg6388
zC157P16
EPN details
CR383677.15
finished
84 CH73-100B5
ctg6388
zH100B5
EPN details
FP236232.9
finished
  GAP (type-3) length unknown    
86 DKEY-73H23
ctg6389
zK73H23
EPN details
CR392361.2
finished
  GAP (type-3) length unknown    
88 CH211-105M14
ctg6390
zC105M14
EPN details
CR352283.6
finished
  GAP (type-3) length unknown    
90 DKEY-288I10
ctg6396
zK288I10
EPN details
CR848031.5
finished
91 DKEY-190E10
ctg6396
zK190E10
EPN details
CR847564.6
finished
92 DKEY-222N1
ctg6396
zK222N1
EPN details
CT027782.9
finished
93 CH211-202D2
ctg6396
zC202D2
EPN details
CR848735.13
finished
  GAP (type-3) length unknown    
95 CH211-178H11
ctg6402
zC178H11
EPN details
BX936389.6
finished
  GAP (type-3) length unknown    
97 CH211-129L10
ctg6460
zC129L10
EPN details
CR293518.13
finished
  GAP (type-3) length unknown    
99 CH211-254L23
ctg6461
zC254L23
EPN details
AL954768.7
finished
100 DKEY-28D20
ctg6461
zK28D20
EPN details
CR932062.11
finished
  GAP (type-3) length unknown    
102 CH211-184C7
ctg6494
zC184C7
EPN details
AL935160.11
finished
103 DKEYP-53E9
ctg6494
zKp53E9
EPN details
BX323053.6
finished
  GAP (type-3) length unknown    
105 CH211-246I7
ctg6502
zC246I7
EPN details
AL953916.14
finished
  GAP (type-3) length unknown    
107 CH211-265N9
ctg6651
zC265N9
EPN details
CR855222.6
finished
108 CH211-69J1
ctg6651
zC69J1
EPN details
CT573315.5
finished
  GAP (type-3) length unknown    
110 DKEY-27E7
ctg6463
zK27E7
EPN details
BX088589.14
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 188205 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR788319.8 1 188205 +
188206 238205 2 N 50000 contig no
238206 339945 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CT971500.7 1 101740 +
339946 344945 4 N 5000 No overlap in database    
344946 559530 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CR392346.18 1 214585 +
559531 609530 6 N 50000 contig no
609531 781450 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX294659.9 1 171920 +
781451 831450 8 N 50000 contig no
831451 988251 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AL929467.6 1 156801 +
988252 1038251 10 N 50000 contig no
1038252 1254142 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 AL928692.9 1 215891 +
1254143 1304142 12 N 50000 contig no
1304143 1447241 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 BX248394.5 1 143099 +
1447242 1452241 14 N 5000 No overlap in database    
1452242 1535697 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 CT963081.7 1 83456 +
1535698 1540697 16 N 5000 No overlap in database    
1540698 1679954 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 BX323027.8 1 139257 +
1679955 1729954 18 N 50000 contig no
1729955 1930630 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 BX294660.18 1 200676 +
1930631 1980630 20 N 50000 contig no
1980631 2121052 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CR846099.7 1 140422 +
2121053 2171052 22 N 50000 contig no
2171053 2339519 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 AL929308.5 1 168467 +
2339520 2389519 24 N 50000 contig no
2389520 2538272 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 BX510998.12 1 148753 +
2538273 2588272 26 N 50000 contig no
2588273 2742755 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX323847.8 1 154483 -
2742756 2814556 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX548031.8 1 71801 -
2814557 2819556 29 N 5000 No overlap in database    
2819557 2869159 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 BX511090.8 1 49603 -
2869160 3010050 31 F BX927102.12
Double 3-prime join to 'BX927102.12'
1 140891 +
3010051 3015050 32 N 5000 Bad overlap - double 3 prime join    
3015051 3122215 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR932365.10 1 107165 -
3122216 3304223 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX511144.13 1986 183993 -
3304224 3347560 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX511016.5 1 43337 -
3347561 3397560 36 N 50000 contig no
3397561 3568266 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CR354397.28 1 170706 +
3568267 3618266 38 N 50000 contig no
3618267 3846408 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CR847495.11 1 228142 +
3846409 3918764 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CR933764.6 2001 74356 +
3918765 3968764 41 N 50000 contig no
3968765 4181019 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 CR925795.5 1 212255 +
4181020 4231019 43 N 50000 contig no
4231020 4431909 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 BX465192.7 1 200890 +
4431910 4436909 45 N 5000 No overlap in database    
4436910 4596286 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR354379.13 1 159377 +
4596287 4721452 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 CR450820.5 2001 127166 +
4721453 4916119 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 48 BX640506.12 2001 196667 +
4916120 4966119 49 N 50000 contig no
4966120 5127978 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 51 BX572075.8 2001 163859 -
5127979 5217012 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 51 BX640407.9 1 89034 -
5217013 5222012 52 N 5000 No overlap in database    
5222013 5405522 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 53 BX572076.4 1 183510 +
5405523 5455522 54 N 50000 contig no
5455523 5588773 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 55 CR933779.14 1 133251 +
5588774 5593773 56 N 5000 No overlap in database    
5593774 5715745 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 CT030015.6 1 121972 +
5715746 5720745 58 N 5000 No overlap in database    
5720746 5920824 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 BX629347.20 1 200079 -
5920825 6031717 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 CR356224.5 2001 112893 +
6031718 6296735 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 BX571974.6 1 265018 -
6296736 6402080 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 62 CR925782.6 2001 107345 +
6402081 6452080 63 N 50000 clone yes
6452081 6670171 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CR354584.8 1 218091 +
6670172 6751880 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CR352235.8 2001 83709 +
6751881 6940421 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 BX323878.10 2001 190541 +
6940422 6990421 67 N 50000 contig no
6990422 7179578 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 69 CR847789.8 1 189157 +
7179579 7375013 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 69 CR751564.10 2002 197436 +
7375014 7425013 70 N 50000 clone no
7425014 7475013 71 N 50000 contig no
7475014 7611658 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 BX324004.6 1 136645 +
7611659 7661658 73 N 50000 contig no
7661659 7721337 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 75 CT030183.9 1 59679 +
7721338 7795530 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 75 BX470069.10 1 74193 -
7795531 7845530 76 N 50000 contig no
7845531 8008780 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CU184877.6 1 163250 +
8008781 8058780 78 N 50000 contig no
8058781 8210997 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CT573275.14 1 152217 +
8210998 8215997 80 N 5000 No overlap in database    
8215998 8366364 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 CR450768.14 1 150367 +
8366365 8371364 82 N 5000 No overlap in database    
8371365 8568439 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 83 CR759788.7 1 197075 +
8568440 8618439 84 N 50000 contig no
8618440 8794700 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 BX927252.5 1 176261 +
8794701 8844700 86 N 50000 contig no
8844701 9006809 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 87 BX001032.12 1 162109 +
9006810 9056809 88 N 50000 contig no
9056810 9215316 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 90 CR847880.11 1 158507 -
9215317 9356990 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 90 CR848035.7 1 141674 -
9356991 9406990 91 N 50000 contig no
9406991 9562543 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 92 CR293525.10 1 155553 +
9562544 9612543 93 N 50000 contig no
9612544 9774930 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 95 CR383677.15 1 162387 +
9774931 9840247 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 94 - 95 FP236232.9 1 65317 +
9840248 9890247 96 N 50000 contig no
9890248 10054062 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 CR392361.2 1 163815 +
10054063 10104062 98 N 50000 contig no
10104063 10265812 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 CR352283.6 1 161750 +
10265813 10315812 100 N 50000 contig no
10315813 10476483 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 103 CR848031.5 1 160671 -
10476484 10595197 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 103 CR847564.6 1991 120704 -
10595198 10698492 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 103 CT027782.9 1 103295 -
10698493 10703492 104 N 5000 No overlap in database    
10703493 10897526 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 105 - 105 CR848735.13 1 194034 +
10897527 10947526 106 N 50000 contig no
10947527 11058356 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 107 BX936389.6 1 110830 +
11058357 11108356 108 N 50000 contig no
11108357 11304730 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 109 CR293518.13 1 196374 +
11304731 11354730 110 N 50000 contig no
11354731 11514172 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 112 AL954768.7 1 159442 -
11514173 11630147 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 112 CR932062.11 2001 117975 +
11630148 11680147 113 N 50000 contig no
11680148 11820548 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 115 AL935160.11 1 140401 +
11820549 11910701 115 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 115 BX323053.6 1 90153 -
11910702 11960701 116 N 50000 contig no
11960702 12138169 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 117 - 117 AL953916.14 1 177468 +
12138170 12188169 118 N 50000 contig no
12188170 12328649 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 120 CR855222.6 1 140480 +
12328650 12398606 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 120 CT573315.5 2001 71957 +
12398607 12448606 121 N 50000 contig no
12448607 12691164 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 122 BX088589.14 1 242558 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DKEY-245H10
ctg1154
zK245H10
EPN details
Analysed
01-NOV-05
CR788319.8
finished
188205 DanioKey        
  GAP (type-3) length unknown                  
3 CH73-205C8
ctg1169
zH205C8
EPN details
Analysed
10-JAN-07
CT971500.7
finished
101740 CHORI-73        
4 DKEY-15G17
ctg1169
zK15G17
EPN details
Analysed
31-JUL-06
CR392346.18
finished
214585 DanioKey        
  GAP (type-3) length unknown                  
6 DKEYP-15D12
ctg1194
zKp15D12
EPN details
Analysed
24-FEB-04
BX294659.9
finished
171920 DanioKeypilot        
  GAP (type-3) length unknown                  
8 CH211-148E17
ctg1203
zC148E17
EPN details
Analysed
21-AUG-03
AL929467.6
finished
156801 CHORI-211        
  GAP (type-3) length unknown                  
10 CH211-208D15
ctg1207
zC208D15
EPN details
Submitted to EMBL
12-JAN-09
AL928692.9
finished
215891 CHORI-211        
  GAP (type-3) length unknown                  
12 CH211-205P19
ctg1214
zC205P19
EPN details
Analysed
25-DEC-03
BX248394.5
finished
143099 CHORI-211        
13 CH73-194F15
ctg1214
zH194F15
EPN details
Analysed
29-NOV-06
CT963081.7
finished
83456 CHORI-73        
14 CH211-242D13
ctg1214
zC242D13
EPN details
Analysed
12-MAY-04
BX323027.8
finished
139257 CHORI-211        
  GAP (type-3) length unknown                  
16 CH211-234D4
ctg2986
zC234D4
EPN details
Analysed
09-JUN-05
BX294660.18
finished
200676 CHORI-211        
  GAP (type-3) length unknown                  
18 DKEY-182M23
ctg3179
zK182M23
EPN details
Analysed
04-MAY-06
CR846099.7
finished
140422 DanioKey        
  GAP (type-3) length unknown                  
20 CH211-93M8
ctg4505
zC93M8
EPN details
Analysed
24-JUL-03
AL929308.5
finished
168467 CHORI-211        
  GAP (type-3) length unknown                  
22 CH211-272L18
ctg4536
zC272L18
EPN details
Analysed
22-MAR-05
BX510998.12
finished
148753 CHORI-211        
  GAP (type-3) length unknown                  
24 CH211-95G21
ctg6053
zC95G21
EPN details
Analysed
05-NOV-05
BX323847.8
finished
154483 CHORI-211 5' / 3'
1 / 71801
- / 3
1997
0
Identified
2008-07-04
find_overl...
humpub
 
25 DKEY-105C4
ctg6053
zK105C4
EPN details
Analysed
30-NOV-05
BX548031.8
finished
73801 DanioKey        
26 CH211-235O5
ctg6053
zC235O5
EPN details
Analysed
05-AUG-04
BX511090.8
finished
49603 CHORI-211 5' / 3'
1 / 164615
- / -
2000
0
Identified
2008-07-04
find_overl...
humpub
 
27 CH211-139C17
ctg6053
zC139C17
EPN details
Analysed
14-DEC-04
BX927102.12
finished
166615 CHORI-211 3' / 3'
140891 / 107165
25724 / -
12529
0.06
Identified
2006-08-10
find_overl...
badger
 
28 CH211-157M7
ctg6053
zC157M7
EPN details
Analysed
08-AUG-06
CR932365.10
finished
119693 CHORI-211 5' / 3'
1 / 183993
- / -
2000
0
Identified
2006-08-10
find_overl...
badger
 
29 CH211-39L20
ctg6053
zC39L20
EPN details
Analysed
29-JUL-04
BX511144.13
finished
185993 CHORI-211 5' / 3'
1986 / 43337
- / -
2000
0.05
Identified
2010-07-06
find_overl...
humpub
 
30 DKEY-181N13
ctg6053
zK181N13
EPN details
Analysed
27-MAR-04
BX511016.5
finished
43337 DanioKey        
  GAP (type-3) length unknown                  
32 CH211-149G10
ctg6057
zC149G10
EPN details
Analysed
25-AUG-06
CR354397.28
finished
170706 CHORI-211        
  GAP (type-3) length unknown                  
34 DKEY-150G9
ctg6060
zK150G9
EPN details
Analysed
31-MAY-06
CR847495.11
finished
228142 DanioKey 3' / 5'
228142 / 2001
- / -
2000
0
Identified
2006-07-20
find_overl...
badger
 
35 DKEY-42I13
ctg6060
zK42I13
EPN details
Analysed
19-JUL-06
CR933764.6
finished
74356 DanioKey        
  GAP (type-3) length unknown                  
37 DKEY-25C9
ctg6068
zK25C9
EPN details
Analysed
28-JUN-06
CR925795.5
finished
212255 DanioKey        
  GAP (type-3) length unknown                  
39 CH211-202P4
ctg6077
zC202P4
EPN details
Analysed
24-MAR-04
BX465192.7
finished
200890 CHORI-211        
40 DKEY-1M14
ctg6077
zK1M14
EPN details
Analysed
26-AUG-06
CR354379.13
finished
159377 DanioKey 3' / 5'
159377 / 2001
- / -
2000
0
Identified
2006-08-27
find_overl...
badger
 
41 CH211-209J18
ctg6077
zC209J18
EPN details
Analysed
12-JAN-06
CR450820.5
finished
127166 CHORI-211 3' / 5'
127166 / 2001
- / -
2000
0
Identified
2005-08-05
find_overl...
badger
 
42 DKEY-271E14
ctg6077
zK271E14
EPN details
Analysed
25-AUG-05
BX640506.12
finished
196667 DanioKey        
  GAP (type-3) length unknown                  
44 CH211-158N13
ctg6086
zC158N13
EPN details
Analysed
01-OCT-04
BX572075.8
finished
163859 CHORI-211 5' / 3'
2001 / 89034
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
45 DKEY-208B10
ctg6086
zK208B10
EPN details
Analysed
19-JUL-05
BX640407.9
finished
89034 DanioKey        
46 DKEY-69N5
ctg6086
zK69N5
EPN details
Analysed
18-MAR-04
BX572076.4
finished
183510 DanioKey        
  GAP (type-3) length unknown                  
48 DKEY-13J5
ctg6089
zK13J5
EPN details
Analysed
19-OCT-06
CR933779.14
finished
133251 DanioKey        
49 CH211-151I13
ctg6089
zC151I13
EPN details
Analysed
25-AUG-06
CT030015.6
finished
121972 CHORI-211        
50 DKEY-103K21
ctg6089
Cl/Pr zK103K21/zK9L5 swap
EPN details
Analysed
21-OCT-04
BX629347.20
finished
200079 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-03-19
find_overl...
badger
 
51 DKEY-17P16
ctg6089
zK17P16
EPN details
Analysed
23-JUN-05
CR356224.5
finished
112893 DanioKey 3' / 3'
112893 / 265018
- / -
2000
0
Identified
2005-03-19
find_overl...
badger
 
52 DKEY-29P4
ctg6089
zK29P4
EPN details
Analysed
19-NOV-04
BX571974.6
finished
267018 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2006-09-21
find_overl...
badger
 
53 CH211-12I19
ctg6089
zC12I19
EPN details
Analysed
15-SEP-06
CR925782.6
finished
107345 CHORI-211 3' / 5'
107345 / 70826
- / 50618
20207
0
Identified
2006-09-21
find_overl...
badger
 
54 CH211-87D13
ctg6089
zC87D13
EPN details
Cancelled
11-JUL-11
CT573274.3
unfinished
169507 CHORI-211 5' / 5'
38428 / 5128
38427 / -
5127
0
Identified
2006-01-26
find_overl...
badger
 
55 DKEY-7B6
ctg6089
zK7B6
EPN details
Analysed
06-OCT-05
CR354584.8
finished
218091 DanioKey 3' / 5'
218091 / 2001
- / -
2000
0
Identified
2005-10-07
find_overl...
badger
 
56 DKEY-14A21
ctg6089
zK14A21
EPN details
Analysed
01-OCT-05
CR352235.8
finished
83709 DanioKey 3' / 5'
83709 / 2001
- / -
2000
0
Identified
2005-08-19
find_overl...
badger
 
57 CH211-57E23
ctg6089
zC57E23
EPN details
Analysed
03-JUL-04
BX323878.10
finished
190541 CHORI-211        
  GAP (type-3) length unknown                  
59 DKEYP-87A5
ctg6114
zKp87A5
EPN details
Analysed
12-JAN-07
CR847789.8
finished
189157 DanioKeypilot 3' / 5'
189157 / 2002
- / -
2001
0
Identified
2007-01-13
find_overl...
badger
 
60 DKEY-21M21
ctg6114
zK21M21
EPN details
Analysed
30-AUG-06
CR751564.10
finished
197436 DanioKey 5' / 5'
1 / 64452
- / 50865
13586
0
Identified
2006-08-31
find_overl...
badger
 
61 DKEY-76H5
ctg6114
zK76H5
EPN details
Cancelled
11-JUL-11
CT573008.1
unfinished
178872 DanioKey        
  GAP (type-3) length unknown                  
63 CH211-284O17
ctg6170
zC284O17
EPN details
Analysed
09-NOV-04
BX324004.6
finished
136645 CHORI-211        
  GAP (type-3) length unknown                  
65 CH211-178F18
ctg6172
zC178F18
EPN details
Analysed
20-JUN-06
CT030183.9
finished
59679 CHORI-211 3' / 3'
59679 / 74193
- / 35771
59679
0.01
Identified
2006-09-08
find_overl...
badger
 
66 RP71-22K7
ctg6172
bZ22K7
EPN details
Analysed
07-MAR-06
BX470069.10
finished
169641 RPCI-71        
  GAP (type-3) length unknown                  
68 CH211-130G10
ctg6182
zC130G10
EPN details
Analysed
05-JUL-07
CU184877.6
finished
163250 CHORI-211        
  GAP (type-3) length unknown                  
70 CH211-94I18
ctg6252
zC94I18
EPN details
Analysed
11-JAN-07
CT573275.14
finished
152217 CHORI-211        
71 CH211-225H10
ctg6252
zC225H10
EPN details
Analysed
17-NOV-05
CR450768.14
finished
150367 CHORI-211        
72 CH211-153F13
ctg6252
zC153F13
EPN details
Analysed
29-APR-05
CR759788.7
finished
197075 CHORI-211        
  GAP (type-3) length unknown                  
74 CH211-212O10
ctg6354
zC212O10
EPN details
Analysed
10-NOV-04
BX927252.5
finished
176261 CHORI-211        
  GAP (type-3) length unknown                  
76 CH211-14K18
ctg6358
zC14K18
EPN details
Analysed
17-JUN-04
BX001032.12
finished
162109 CHORI-211        
  GAP (type-3) length unknown                  
78 DKEY-165L13
ctg6368
zK165L13
EPN details
Analysed
03-AUG-06
CR847880.11
finished
158507 DanioKey 5' / 3'
1 / 141674
- / -
2000
0
Identified
2006-08-03
find_overl...
badger
 
79 CH211-203J1
ctg6368
zC203J1
EPN details
Analysed
13-MAY-06
CR848035.7
finished
143674 CHORI-211        
  GAP (type-3) length unknown                  
81 CH211-142B9
ctg6382
zC142B9
EPN details
Analysed
18-JAN-05
CR293525.10
finished
155553 CHORI-211        
  GAP (type-3) length unknown                  
83 CH211-157P16
ctg6388
zC157P16
EPN details
Analysed
19-OCT-04
CR383677.15
finished
164387 CHORI-211 3' / 5'
162387 / 1
- / -
2000
0
Identified
2009-09-19
find_overl...
humpub
 
84 CH73-100B5
ctg6388
zH100B5
EPN details
Analysed
26-AUG-09
FP236232.9
finished
65317 CHORI-73        
  GAP (type-3) length unknown                  
86 DKEY-73H23
ctg6389
zK73H23
EPN details
Analysed
12-MAY-04
CR392361.2
finished
163815 DanioKey        
  GAP (type-3) length unknown                  
88 CH211-105M14
ctg6390
zC105M14
EPN details
Analysed
31-MAY-05
CR352283.6
finished
161750 CHORI-211        
  GAP (type-3) length unknown                  
90 DKEY-288I10
ctg6396
zK288I10
EPN details
Analysed
05-AUG-05
CR848031.5
finished
160671 DanioKey 5' / 3'
1 / 120704
- / -
2000
0
Identified
2008-07-04
find_overl...
humpub
 
91 DKEY-190E10
ctg6396
zK190E10
EPN details
Analysed
22-NOV-05
CR847564.6
finished
122704 DanioKey 5' / 3'
1991 / 103295
- / -
2000
0
Identified
2010-07-06
find_overl...
humpub
 
92 DKEY-222N1
ctg6396
zK222N1
EPN details
Analysed
02-AUG-06
CT027782.9
finished
103295 DanioKey        
93 CH211-202D2
ctg6396
zC202D2
EPN details
Analysed
20-JUN-06
CR848735.13
finished
194034 CHORI-211        
  GAP (type-3) length unknown                  
95 CH211-178H11
ctg6402
zC178H11
EPN details
Analysed
21-SEP-04
BX936389.6
finished
110830 CHORI-211        
  GAP (type-3) length unknown                  
97 CH211-129L10
ctg6460
zC129L10
EPN details
Analysed
03-MAR-05
CR293518.13
finished
196374 CHORI-211        
  GAP (type-3) length unknown                  
99 CH211-254L23
ctg6461
zC254L23
EPN details
Analysed
21-NOV-03
AL954768.7
finished
159442 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2006-07-20
find_overl...
badger
 
100 DKEY-28D20
ctg6461
zK28D20
EPN details
Analysed
20-JUL-06
CR932062.11
finished
117975 DanioKey        
  GAP (type-3) length unknown                  
102 CH211-184C7
ctg6494
zC184C7
EPN details
Analysed
20-NOV-03
AL935160.11
finished
140401 CHORI-211 3' / 3'
140401 / 90153
- / -
2000
0
Identified
2008-07-04
find_overl...
humpub
 
103 DKEYP-53E9
ctg6494
zKp53E9
EPN details
Analysed
24-JUN-04
BX323053.6
finished
92153 DanioKeypilot        
  GAP (type-3) length unknown                  
105 CH211-246I7
ctg6502
zC246I7
EPN details
Analysed
03-DEC-03
AL953916.14
finished
177468 CHORI-211        
  GAP (type-3) length unknown                  
107 CH211-265N9
ctg6651
zC265N9
EPN details
Analysed
28-APR-06
CR855222.6
finished
140480 CHORI-211 3' / 5'
140480 / 2001
- / -
2004
0.2
Identified
2006-08-26
find_overl...
badger
 
108 CH211-69J1
ctg6651
zC69J1
EPN details
Analysed
22-AUG-06
CT573315.5
finished
71957 CHORI-211        
  GAP (type-3) length unknown                  
110 DKEY-27E7
ctg6463
zK27E7
EPN details
Analysed
09-AUG-05
BX088589.14
finished
242558 DanioKey        

Statistics

Clone Summary

Number of gaps
36
Gap types
type-3
36
Total clones
74
Clone HTGS Phases
finished
72
unfinished
2
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
114,210
Total finished length of fin clones w/ overlap
10,904,840
Total finished length of fin clones w/o overlap
10,790,630
Total overlap length of fin+unfin clones
153,130
Total finished length of fin+unfin clones w/ overlap
11,253,219
Total finished length of fin+unfin clones w/o overlap
11,100,089

AGP errors

# rank accession seq_start seq_end strand error date
1 32 BX927102.12 1 140,891 1 Double 3-prime join to 'BX927102.12' Thu, 27 Nov 2014 02:10

Dovetails

# rank accession status length date
1 25 BX548031.8 unfinished 3 Thu, 27 Nov 2014 02:10
2 27 BX927102.12 unfinished 25,724 Thu, 27 Nov 2014 02:10
3 54 CT573274.3 unfinished 50,618 Thu, 27 Nov 2014 02:10
4 54 CT573274.3 unfinished 38,427 Thu, 27 Nov 2014 02:10
5 61 CT573008.1 unfinished 50,865 Thu, 27 Nov 2014 02:10
6 66 BX470069.10 unfinished 35,771 Thu, 27 Nov 2014 02:10

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Other links

* quick link - http://q.sanger.ac.uk/4isvq8xo