ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_11 (TPF updated: 2013-10-24)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-38O15
ctg1062
zK38O15
CR855388.18
finished
2 CH211-225A3
ctg1062
zC225A3
BX119908.8
finished
3 CH211-171D6
ctg1062
zC171D6
AL935027.13
finished
  GAP (type-3) length unknown    
5 CH211-119M14
ctg1074
zC119M14
CU019623.5
finished
  GAP (type-3) length unknown    
7 DKEY-43J14
ctg1087
zK43J14
CR846086.14
finished
  GAP (type-3) length unknown    
9 CH211-232N15
ctg1091
zC232N15
CR735106.9
finished
10 DKEY-216M6
ctg1091
zK216M6
CR847999.10
finished
  GAP (type-3) length unknown    
12 CH211-139N7
ctg1098
zC139N7
BX649420.2
finished
13 DKEY-27K11
ctg1098
zK27K11
BX663532.4
finished
  GAP (type-3) length unknown    
15 DKEY-105D16
ctg1112
zK105D16
CT573193.8
finished
  GAP (type-3) length unknown    
17 DKEY-226F21
ctg1136
zK226F21
CR848830.7
finished
18 DKEY-222O19
ctg1136
zK222O19
BX072582.6
finished
19 CH211-195H1
ctg1136
zC195H1
BX927242.14
finished
  GAP (type-3) length unknown    
21 CH211-127N10
ctg1138
zC127N10
AL928821.6
finished
  GAP (type-3) length unknown    
23 CH211-25H8
ctg1141
zC25H8
CR450731.8
finished
24 DKEY-18M7
ctg1141
zK18M7
BX571983.12
finished
  GAP (type-3) length unknown    
26 DKEY-239B8
ctg1274
zK239B8
CR854896.11
finished
  GAP (type-3) length unknown    
28 DKEY-170I11
ctg1361
zK170I11
BX323086.4
finished
  GAP (type-3) length unknown    
30 DKEYP-19G9
ctg2138
zKp19G9
BX890603.17
finished
  GAP (type-3) length unknown    
32 DKEY-283C16
ctg2538
zK283C16
CR381687.17
finished
  GAP (type-3) length unknown    
34 DKEY-208K8
ctg2583
zK208K8
CR926911.13
finished
  GAP (type-3) length unknown    
36 CH211-276P5
ctg2872
zC276P5
CR848707.6
finished
  GAP (type-3) length unknown    
38 RP71-7E23
ctg2917
bZ7E23
CT997808.7
finished
39 CH211-267N8
ctg2917
zC267N8
CR786569.13
finished
  GAP (type-3) length unknown    
41 CH211-63H10
ctg320
zC63H10
BX470231.8
finished
  GAP (type-3) length unknown    
43 CH211-193L17
ctg4550
zC193L17
BX682549.8
finished
  GAP (type-3) length unknown    
45 DKEY-15D15
ctg6006
zK15D15
CU207258.9
finished
  GAP (type-3) length unknown    
47 CH211-22C7
ctg6013
zC22C7
CU179657.6
finished
  GAP (type-3) length unknown    
49 DKEY-43B13
ctg6101
zK43B13
CR749176.14
finished
  GAP (type-3) length unknown    
51 CH211-150M24
ctg6103
zC150M24
CU467617.6
finished
  GAP (type-3) length unknown    
53 CH211-196D14
ctg6209
zC196D14
AL772274.8
finished
54 CH211-219C23
ctg6209
zC219C23
CR545461.6
finished
55 CH211-78C14
ctg6209
zC78C14
CR450690.7
finished
  GAP (type-3) length unknown    
57 CH211-112P19
ctg6532
zC112P19
BX936363.13
finished
  GAP (type-3) length unknown    
59 CH211-13I11
ctg6559
zC13I11
CR352237.9
finished
  GAP (type-3) length unknown    
61 RP71-8E8
ctg6562
bZ8E8
BX465223.9
finished
  GAP (type-3) length unknown    
63 CH211-185C9
ctg6721
zC185C9
BX004882.10
finished
64 DKEY-53H9
ctg6721
zK53H9
AL929596.11
finished
65 DKEY-221L8
ctg6721
zK221L8
BX088601.12
finished
66 DKEYP-29C12
ctg6721
zKp29C12
CR931977.8
finished
  GAP (type-3) length unknown    
68 CH211-119A10
ctg6738
zC119A10
BX957335.12
finished
  GAP (type-3) length unknown    
70 DKEY-27P12
ctg6740
zK27P12
CR388183.14
finished
  GAP (type-3) length unknown    
72 DKEY-113M9
ctg6748
zK113M9
AL844522.7
finished
  GAP (type-3) length unknown    
74 DKEY-29P20
ctg6754
zK29P20
AL974308.13
finished
75 DKEY-13A21
ctg6754
zK13A21
AL844847.6
finished
  GAP (type-3) length unknown    
77 DKEYP-38C9
ctg6755
zKp38C9
CR926125.7
finished
78 CH211-194H2
ctg6755
zC194H2
BX511229.6
finished
  GAP (type-3) length unknown    
80 DKEY-181H1
ctg6804
zK181H1
BX537269.8
finished
81 DKEYP-120E12
ctg6804
zKp120E12
BX537275.8
finished
  GAP (type-3) length unknown    
83 CH211-197M2
ctg7014
zC197M2
BX572645.26
finished
  GAP (type-3) length unknown    
85 DKEY-150P14
ctg7015
zK150P14
CR450705.8
finished
  GAP (type-3) length unknown    
87 DKEY-87G10
ctg7016
zK87G10
CR925739.5
finished
88 CH211-278L13
ctg7016
zC278L13
BX470258.4
finished
89 CH211-249J24
ctg7016
zC249J24
CR450709.12
finished
  GAP (type-3) length unknown    
91 DKEY-197A13
ctg7017
zK197A13
BX530087.7
finished
  GAP (type-3) length unknown    
93 CH211-145C5
ctg7018
zC145C5
AL929306.4
finished
94 DKEY-47L19
ctg7018
zK47L19
AL954663.13
finished
95 CH211-14L11
ctg7018
zC14L11
BX001059.6
finished
  GAP (type-3) length unknown    
97 DKEY-6H1
ctg7019
zK6H1
BX572634.7
finished
98 DKEYP-86G5
ctg7019
zKp86G5
BX572081.6
finished
  GAP (type-3) length unknown    
100 CH211-209J5
ctg7116
zC209J5
BX572639.11
finished
101 DKEY-205E15
ctg7116
zK205E15
CR550305.7
finished
  GAP (type-3) length unknown    
103 DKEY-22M10
ctg7127
zK22M10
CR931725.6
finished
  GAP (type-3) length unknown    
105 DKEY-182B23
ctg7129
zK182B23
BX571941.4
finished
106 CH211-51L17
ctg7129
zC51L17
BX548064.12
finished
  GAP (type-3) length unknown    
108 DKEY-21N20
ctg7130
zK21N20
BX293556.14
finished
  GAP (type-3) length unknown    
110 CH211-264G11
ctg7163
zC264G11
CR847969.6
finished
  GAP (type-3) length unknown    
112 DKEY-29F2
ctg7197
zK29F2
BX005343.18
finished
  GAP (type-3) length unknown    
114 DKEY-35H11
ctg7198
zK35H11
BX279524.5
finished
  GAP (type-3) length unknown    
116 CH211-198E12
ctg7204
zC198E12
BX640548.14
finished
  GAP (type-3) length unknown    
118 DKEY-231O6
ctg7204_1
zK231O6
CU302307.5
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 144763 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR855388.18 1 144763 +
144764 149763 2 N 5000 No overlap in database    
149764 271565 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 BX119908.8 1 121802 +
271566 323558 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL935027.13 2001 53993 +
323559 373558 5 N 50000 contig no
373559 425813 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CU019623.5 1 52255 +
425814 475813 7 N 50000 contig no
475814 702365 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CR846086.14 1 226552 +
702366 752365 9 N 50000 contig no
752366 920194 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CR735106.9 1 167829 +
920195 925194 11 N 5000 No overlap in database    
925195 1117385 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 CR847999.10 1 192191 +
1117386 1167385 13 N 50000 contig no
1167386 1334243 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 BX649420.2 1 166858 -
1334244 1404235 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 BX663532.4 2001 71992 +
1404236 1454235 16 N 50000 contig no
1454236 1599152 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 CT573193.8 1 144917 +
1599153 1649152 18 N 50000 contig no
1649153 1741266 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 CR848830.7 1 92114 +
1741267 1934184 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX072582.6 2001 194918 +
1934185 2126794 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 21 BX927242.14 2001 194610 +
2126795 2176794 22 N 50000 contig no
2176795 2330026 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 AL928821.6 1 153232 +
2330027 2380026 24 N 50000 contig no
2380027 2397569 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 26 CR450731.8 1 17543 +
2397570 2644498 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 26 BX571983.12 2001 248929 +
2644499 2694498 27 N 50000 contig no
2694499 2860054 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 CR854896.11 1 165556 +
2860055 2910054 29 N 50000 contig no
2910055 3093080 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 BX323086.4 1 183026 +
3093081 3143080 31 N 50000 contig no
3143081 3327791 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 BX890603.17 1 184711 +
3327792 3377791 33 N 50000 contig no
3377792 3580316 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 CR381687.17 1 202525 +
3580317 3630316 35 N 50000 contig no
3630317 3788938 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 36 CR926911.13 1 158622 +
3788939 3838938 37 N 50000 contig no
3838939 3997287 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 CR848707.6 1 158349 +
3997288 4047287 39 N 50000 contig no
4047288 4150185 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 41 CT997808.7 2001 104898 -
4150186 4289184 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 41 CR786569.13 1 138999 -
4289185 4339184 42 N 50000 contig no
4339185 4519962 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 BX470231.8 1 180778 +
4519963 4569962 44 N 50000 contig no
4569963 4721522 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 BX682549.8 1 151560 +
4721523 4771522 46 N 50000 contig no
4771523 4989440 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CU207258.9 1 217918 +
4989441 5039440 48 N 50000 contig no
5039441 5229700 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 CU179657.6 1 190260 +
5229701 5279700 50 N 50000 contig no
5279701 5517349 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 51 CR749176.14 1 237649 +
5517350 5567349 52 N 50000 contig no
5567350 5715640 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 53 CU467617.6 1 148291 +
5715641 5765640 54 N 50000 contig no
5765641 5955266 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 AL772274.8 1 189626 +
5955267 5957260 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 CR545461.6 2001 3994 +
5957261 6118588 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 57 CR450690.7 2001 163328 +
6118589 6168588 58 N 50000 contig no
6168589 6353437 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 59 BX936363.13 1 184849 +
6353438 6403437 60 N 50000 contig no
6403438 6597085 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 CR352237.9 1 193648 +
6597086 6647085 62 N 50000 contig no
6647086 6830314 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 BX465223.9 1 183229 +
6830315 6880314 64 N 50000 contig no
6880315 7017791 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 68 BX004882.10 1 137477 +
7017792 7207665 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 68 AL929596.11 2001 191874 +
7207666 7239132 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 68 BX088601.12 2001 33467 +
7239133 7320343 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 68 CR931977.8 2001 83211 +
7320344 7370343 69 N 50000 contig no
7370344 7538787 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 BX957335.12 1 168444 +
7538788 7588787 71 N 50000 contig no
7588788 7821358 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 CR388183.14 1 232571 +
7821359 7871358 73 N 50000 contig no
7871359 8064551 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 74 AL844522.7 1 193193 +
8064552 8114551 75 N 50000 contig no
8114552 8293062 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 AL974308.13 1 178511 +
8293063 8528236 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 AL844847.6 1 235174 +
8528237 8578236 78 N 50000 contig no
8578237 8640728 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 80 CR926125.7 1 62492 +
8640729 8850714 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 80 BX511229.6 2001 211986 +
8850715 8900714 81 N 50000 contig no
8900715 8973839 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 83 BX537269.8 1 73125 +
8973840 9098187 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 82 - 83 BX537275.8 49284 173631 +
9098188 9148187 84 N 50000 contig no
9148188 9260926 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 BX572645.26 1 112739 +
9260927 9310926 86 N 50000 contig no
9310927 9315634 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 87 CR450705.8 1 4708 +
9315635 9365634 88 N 50000 contig no
9365635 9497157 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 89 CR925739.5 1 131523 +
9497158 9502157 90 N 5000 No overlap in database    
9502158 9686783 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 91 BX470258.4 1 184626 +
9686784 9691783 92 N 5000 No overlap in database    
9691784 9849528 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 CR450709.12 1 157745 +
9849529 9899528 94 N 50000 contig no
9899529 9921765 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 BX530087.7 1 22237 +
9921766 9971765 96 N 50000 contig no
9971766 10071761 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 99 AL929306.4 76227 176222 -
10071762 10284308 98 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 99 AL954663.13 2000 214546 -
10284309 10364748 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 99 BX001059.6 1 80440 -
10364749 10414748 100 N 50000 contig no
10414749 10617209 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 102 BX572634.7 1 202461 +
10617210 10767357 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 102 BX572081.6 2001 152148 +
10767358 10817357 103 N 50000 contig no
10817358 10963046 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 104 - 105 BX572639.11 1 145689 +
10963047 11120107 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 104 - 105 CR550305.7 2001 159061 +
11120108 11170107 106 N 50000 contig no
11170108 11375406 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 107 CR931725.6 1 205299 +
11375407 11425406 108 N 50000 contig no
11425407 11472451 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 110 BX571941.4 2001 49045 -
11472452 11652652 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 110 BX548064.12 1 180201 -
11652653 11702652 111 N 50000 contig no
11702653 11915532 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 112 - 112 BX293556.14 1 212880 +
11915533 11965532 113 N 50000 contig no
11965533 12089753 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 114 CR847969.6 1 124221 +
12089754 12139753 115 N 50000 contig no
12139754 12375451 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 116 BX005343.18 1 235698 +
12375452 12425451 117 N 50000 contig no
12425452 12582891 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 118 BX279524.5 1 157440 +
12582892 12632891 119 N 50000 contig no
12632892 12864478 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 120 BX640548.14 1 231587 +
12864479 12914478 121 N 50000 contig no
12914479 13092925 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 122 CU302307.5 1 178447 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
47
Gap types
type-3
47
Total clones
71
Clone HTGS Phases
finished
71
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
93,513
Total finished length of fin clones w/ overlap
10,892,640
Total finished length of fin clones w/o overlap
10,799,127
Total overlap length of fin+unfin clones
93,513
Total finished length of fin+unfin clones w/ overlap
10,892,640
Total finished length of fin+unfin clones w/o overlap
10,799,127

Dovetails

# rank accession status length date
1 19 BX927242.14 unfinished 51 Wed, 01 Jul 2015 02:04
2 93 AL929306.4 unfinished 76,226 Wed, 01 Jul 2015 02:04

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Other links

* quick link - http://q.sanger.ac.uk/ie7bf11m