ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_9 (TPF updated: 2010-03-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP71-27M6
ctg1369
bZ27M6
EPN details
BX322584.16
finished
  GAP (type-3) length unknown    
3 CH211-138E6
ctg2456
zC138E6
EPN details
CR759903.8
finished
  GAP (type-3) length unknown    
5 DKEY-151O8
ctg2585
zK151O8
EPN details
BX897687.7
finished
  GAP (type-3) length unknown    
7 CH211-168M7
ctg2593
zC168M7
EPN details
AL935048.7
finished
8 DKEY-89P3
ctg2593
zK89P3
EPN details
AL974314.21
finished
9 DKEY-46O18
ctg2593
zK46O18
EPN details
CR854911.14
finished
  GAP (type-3) length unknown    
11 DKEY-18L16
ctg2621
zK18L16
EPN details
CR388221.20
finished
  GAP (type-3) length unknown    
13 DKEY-13A17
ctg3327
zK13A17
EPN details
CR385027.12
finished
  GAP (type-3) length unknown    
15 CH211-189M4
ctg6045
zC189M4
EPN details
CU151883.12
finished
  GAP (type-3) length unknown    
17 CH211-190A12
ctg6094
zC190A12
EPN details
CU137641.6
finished
  GAP (type-3) length unknown    
19 CH211-188M3
ctg6123
zC188M3
EPN details
AL953877.5
finished
  GAP (type-3) length unknown    
21 CH211-196H1
ctg6146
zC196H1
EPN details
CU151884.5
finished
  GAP (type-3) length unknown    
23 DKEYP-118B7
ctg6164
zKp118B7
EPN details
BX470205.12
finished
24 CH211-194D6
ctg6164
zC194D6
EPN details
AL772198.14
finished
25 DKEY-22A1
ctg6164
zK22A1
EPN details
BX322637.7
finished
  GAP (type-3) length unknown    
27 CH211-14A14
ctg6258
zC14A14
EPN details
AL929090.4
finished
  GAP (type-3) length unknown    
29 CH211-232O4
ctg6273
zC232O4
EPN details
CU207253.6
finished
  GAP (type-3) length unknown    
31 DKEY-255G14
ctg6357
zK255G14
EPN details
BX294188.11
finished
  GAP (type-3) length unknown    
33 DKEY-253G9
ctg6538
zK253G9
EPN details
BX294179.5
finished
  GAP (type-3) length unknown    
35 CH211-225H17
ctg6539
zC225H17
EPN details
BX276095.7
finished
  GAP (type-3) length unknown    
37 CH211-225C13
ctg6541
zC225C13
EPN details
BX855621.15
finished
  GAP (type-3) length unknown    
39 CH211-261H10
ctg6624
zC261H10
EPN details
BX936301.8
finished
  GAP (type-3) length unknown    
41 CH211-241P24
ctg6645
zC241P24
EPN details
BX248498.5
finished
  GAP (type-3) length unknown    
43 CH211-196E8
ctg6648
zC196E8
EPN details
CR354403.16
finished
44 CH211-209F14
ctg6648
zC209F14
EPN details
BX530033.6
finished
  GAP (type-3) length unknown    
46 DKEY-96O13
ctg6650
zK96O13
EPN details
BX571722.18
finished
47 CH211-128D20
ctg6650
zC128D20
EPN details
BX936402.12
finished
  GAP (type-3) length unknown    
49 DKEY-11D22
ctg6703
zK11D22
EPN details
BX001018.11
finished
  GAP (type-3) length unknown    
51 CH211-31O18
ctg7001
zC31O18
EPN details
BX004815.6
finished
  GAP (type-3) length unknown    
53 DKEY-10D15
ctg7007
zK10D15
EPN details
BX247888.10
finished
54 CH211-286K10
ctg7007
zC286K10
EPN details
CR848682.9
finished
  GAP (type-3) length unknown    
56 CH211-58J23
ctg7012
zC58J23
EPN details
CR936950.7
finished
57 CH211-235F16
ctg7012
zC235F16
EPN details
BX510311.6
finished
  GAP (type-3) length unknown    
59 RP71-1D17
ctg7108
bZ1D17
EPN details
CU462877.9
finished
  GAP (type-3) length unknown    
61 DKEY-159B16
ctg7135
zK159B16
EPN details
CR407600.8
finished
62 CH211-152N19
ctg7135
zC152N19
EPN details
BX005146.4
finished
63 CH1073-234M2
ctg7135
zFD234M2
EPN details
CU695154.5
finished
64 CH73-94H22
ctg7135
zH94H22
EPN details
CU972518.7
finished
  GAP (type-3) length unknown    
66 DKEY-63P22
ctg7138
zK63P22
EPN details
AL935307.9
finished
  GAP (type-3) length unknown    
68 CH211-160E15
ctg7139
zC160E15
EPN details
BX005088.4
finished
  GAP (type-3) length unknown    
70 DKEY-30H3
ctg7140
zK30H3
EPN details
AL954845.21
finished
71 CH211-43F22
ctg7140
zC43F22
EPN details
CR388074.9
finished
  GAP (type-3) length unknown    
73 CH211-233I11
ctg900
zC233I11
EPN details
BX248325.7
finished
74 CH211-278C10
ctg900
zC278C10
EPN details
BX296542.12
finished
  GAP (type-3) length unknown    
76 DKEY-204C3
ctg946
zK204C3
EPN details
BX664714.16
finished
77 DKEY-14B2
ctg946
zK14B2
EPN details
BX663615.15
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 144727 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX322584.16 1 144727 +
144728 194727 2 N 50000 contig no
194728 363416 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR759903.8 1 168689 +
363417 413416 4 N 50000 contig no
413417 621643 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX897687.7 1 208227 +
621644 671643 6 N 50000 contig no
671644 809305 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AL935048.7 1 137662 +
809306 999815 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AL974314.21 2001 192510 +
999816 1004815 9 N 5000 No overlap in database    
1004816 1238337 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CR854911.14 1 233522 +
1238338 1288337 11 N 50000 contig no
1288338 1520317 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 CR388221.20 1 231980 +
1520318 1570317 13 N 50000 contig no
1570318 1798771 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CR385027.12 1 228454 +
1798772 1848771 15 N 50000 contig no
1848772 1995967 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CU151883.12 1 147196 +
1995968 2045967 17 N 50000 contig no
2045968 2180921 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 CU137641.6 1 134954 +
2180922 2230921 19 N 50000 contig no
2230922 2383001 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AL953877.5 1 152080 +
2383002 2433001 21 N 50000 contig no
2433002 2633119 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CU151884.5 1 200118 +
2633120 2683119 23 N 50000 contig no
2683120 2724259 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 BX470205.12 1 41140 +
2724260 2729259 25 N 5000 No overlap in database    
2729260 2938941 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 AL772198.14 2001 211682 -
2938942 3117504 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 BX322637.7 1 178563 -
3117505 3167504 28 N 50000 contig no
3167505 3345581 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 AL929090.4 1 178077 +
3345582 3395581 30 N 50000 contig no
3395582 3551169 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CU207253.6 1 155588 +
3551170 3601169 32 N 50000 contig no
3601170 3863112 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 BX294188.11 1 261943 +
3863113 3913112 34 N 50000 contig no
3913113 4118699 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 BX294179.5 1 205587 +
4118700 4168699 36 N 50000 contig no
4168700 4366253 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 BX276095.7 1 197554 +
4366254 4416253 38 N 50000 contig no
4416254 4594700 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 BX855621.15 1 178447 +
4594701 4644700 40 N 50000 contig no
4644701 4756950 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 BX936301.8 1 112250 +
4756951 4806950 42 N 50000 contig no
4806951 4978298 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 BX248498.5 1 171348 +
4978299 5028298 44 N 50000 contig no
5028299 5195717 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 CR354403.16 1 167419 +
5195718 5414982 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 BX530033.6 2001 221265 +
5414983 5464982 47 N 50000 contig no
5464983 5693196 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 48 BX571722.18 1 228214 +
5693197 5698196 49 N 5000 No overlap in database    
5698197 5854278 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 50 BX936402.12 1 156082 +
5854279 5904278 51 N 50000 contig no
5904279 6111215 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 BX001018.11 1 206937 +
6111216 6161215 53 N 50000 contig no
6161216 6334114 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 BX004815.6 1 172899 +
6334115 6384114 55 N 50000 contig no
6384115 6607539 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 BX247888.10 1 223425 +
6607540 6690482 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 CR848682.9 2001 84943 +
6690483 6740482 58 N 50000 contig no
6740483 6789351 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 60 CR936950.7 1 48869 +
6789352 6985596 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 60 BX510311.6 1 196245 -
6985597 7035596 61 N 50000 contig no
7035597 7177548 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 CU462877.9 1 141952 +
7177549 7227548 63 N 50000 contig no
7227549 7302078 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 CR407600.8 1 74530 +
7302079 7307078 65 N 5000 No overlap in database    
7307079 7487936 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 BX005146.4 1 180858 +
7487937 7492936 67 N 5000 No overlap in database    
7492937 7511851 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 68 CU695154.5 1 18915 +
7511852 7516851 69 N 5000 No overlap in database    
7516852 7608693 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 CU972518.7 1 91842 +
7608694 7658693 71 N 50000 contig no
7658694 7893437 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 AL935307.9 1 234744 +
7893438 7943437 73 N 50000 contig no
7943438 8136926 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 74 BX005088.4 1 193489 +
8136927 8186926 75 N 50000 contig no
8186927 8413269 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 AL954845.21 1 226343 -
8413270 8499110 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 CR388074.9 2001 87841 +
8499111 8549110 78 N 50000 contig no
8549111 8706317 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 BX248325.7 1 157207 +
8706318 8711317 80 N 5000 No overlap in database    
8711318 8886201 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 BX296542.12 1 174884 +
8886202 8936201 82 N 50000 contig no
8936202 9095834 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 84 BX664714.16 1 159633 +
9095835 9306377 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 84 BX663615.15 2001 212543 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP71-27M6
ctg1369
bZ27M6
EPN details
Analysed
29-JAN-05
BX322584.16
finished
144727 RPCI-71        
  GAP (type-3) length unknown                  
3 CH211-138E6
ctg2456
zC138E6
EPN details
Analysed
19-JUL-05
CR759903.8
finished
168689 CHORI-211        
  GAP (type-3) length unknown                  
5 DKEY-151O8
ctg2585
zK151O8
EPN details
Analysed
27-APR-04
BX897687.7
finished
208227 DanioKey        
  GAP (type-3) length unknown                  
7 CH211-168M7
ctg2593
zC168M7
EPN details
Submitted to EMBL
12-JAN-09
AL935048.7
finished
137662 CHORI-211 3' / 5'
137662 / 2001
- / -
2000
0
Identified
2004-07-23
find_overl...
badger
 
8 DKEY-89P3
ctg2593
zK89P3
EPN details
Submitted to EMBL
12-JAN-09
AL974314.21
finished
192510 DanioKey        
9 DKEY-46O18
ctg2593
zK46O18
EPN details
Analysed
19-JAN-07
CR854911.14
finished
233522 DanioKey        
  GAP (type-3) length unknown                  
11 DKEY-18L16
ctg2621
zK18L16
EPN details
Analysed
19-OCT-06
CR388221.20
finished
231980 DanioKey        
  GAP (type-3) length unknown                  
13 DKEY-13A17
ctg3327
zK13A17
EPN details
Analysed
11-MAR-06
CR385027.12
finished
228454 DanioKey        
  GAP (type-3) length unknown                  
15 CH211-189M4
ctg6045
zC189M4
EPN details
Analysed
23-OCT-07
CU151883.12
finished
147196 CHORI-211        
  GAP (type-3) length unknown                  
17 CH211-190A12
ctg6094
zC190A12
EPN details
Submitted to EMBL
25-FEB-08
CU137641.6
finished
134954 CHORI-211        
  GAP (type-3) length unknown                  
19 CH211-188M3
ctg6123
zC188M3
EPN details
Analysed
30-AUG-03
AL953877.5
finished
152080 CHORI-211        
  GAP (type-3) length unknown                  
21 CH211-196H1
ctg6146
zC196H1
EPN details
Analysed
14-JUN-07
CU151884.5
finished
200118 CHORI-211        
  GAP (type-3) length unknown                  
23 DKEYP-118B7
ctg6164
zKp118B7
EPN details
Analysed
04-MAY-06
BX470205.12
finished
41140 DanioKeypilot        
24 CH211-194D6
ctg6164
zC194D6
EPN details
Submitted to EMBL
12-JAN-09
AL772198.14
finished
211682 CHORI-211 5' / 3'
2001 / 178563
- / -
2000
0
Identified
2004-02-18
find_overl...
badger
 
25 DKEY-22A1
ctg6164
zK22A1
EPN details
Submitted to EMBL
12-JAN-09
BX322637.7
finished
178563 DanioKey        
  GAP (type-3) length unknown                  
27 CH211-14A14
ctg6258
zC14A14
EPN details
Submitted to EMBL
25-FEB-08
AL929090.4
finished
178077 CHORI-211        
  GAP (type-3) length unknown                  
29 CH211-232O4
ctg6273
zC232O4
EPN details
Analysed
05-JUL-07
CU207253.6
finished
155588 CHORI-211        
  GAP (type-3) length unknown                  
31 DKEY-255G14
ctg6357
zK255G14
EPN details
Analysed
17-MAR-05
BX294188.11
finished
261943 DanioKey        
  GAP (type-3) length unknown                  
33 DKEY-253G9
ctg6538
zK253G9
EPN details
Analysed
04-OCT-03
BX294179.5
finished
205587 DanioKey        
  GAP (type-3) length unknown                  
35 CH211-225H17
ctg6539
zC225H17
EPN details
Analysed
20-FEB-04
BX276095.7
finished
197554 CHORI-211        
  GAP (type-3) length unknown                  
37 CH211-225C13
ctg6541
zC225C13
EPN details
Analysed
25-MAR-04
BX855621.15
finished
178447 CHORI-211        
  GAP (type-3) length unknown                  
39 CH211-261H10
ctg6624
zC261H10
EPN details
Analysed
22-JUL-06
BX936301.8
finished
112250 CHORI-211        
  GAP (type-3) length unknown                  
41 CH211-241P24
ctg6645
zC241P24
EPN details
Analysed
21-FEB-04
BX248498.5
finished
171348 CHORI-211        
  GAP (type-3) length unknown                  
43 CH211-196E8
ctg6648
zC196E8
EPN details
Analysed
04-MAR-06
CR354403.16
finished
167419 CHORI-211 3' / 5'
167419 / 2001
- / -
2000
0
Identified
2006-03-09
find_overl...
badger
 
44 CH211-209F14
ctg6648
zC209F14
EPN details
Analysed
17-MAR-05
BX530033.6
finished
221265 CHORI-211        
  GAP (type-3) length unknown                  
46 DKEY-96O13
ctg6650
zK96O13
EPN details
Analysed
06-MAY-06
BX571722.18
finished
228214 DanioKey        
47 CH211-128D20
ctg6650
zC128D20
EPN details
Analysed
26-OCT-05
BX936402.12
finished
156082 CHORI-211        
  GAP (type-3) length unknown                  
49 DKEY-11D22
ctg6703
zK11D22
EPN details
Analysed
21-NOV-03
BX001018.11
finished
206937 DanioKey        
  GAP (type-3) length unknown                  
51 CH211-31O18
ctg7001
zC31O18
EPN details
Submitted to EMBL
12-JAN-09
BX004815.6
finished
172899 CHORI-211        
  GAP (type-3) length unknown                  
53 DKEY-10D15
ctg7007
zK10D15
EPN details
Analysed
14-MAY-05
BX247888.10
finished
223425 DanioKey 3' / 5'
223425 / 2001
- / -
2000
0
Identified
2005-10-27
find_overl...
badger
 
54 CH211-286K10
ctg7007
zC286K10
EPN details
Analysed
29-MAR-06
CR848682.9
finished
84943 CHORI-211        
  GAP (type-3) length unknown                  
56 CH211-58J23
ctg7012
zC58J23
EPN details
Analysed
12-MAY-07
CR936950.7
finished
48869 CHORI-211 3' / 3'
48869 / 196245
- / -
2000
0
Identified
2007-05-16
find_overl...
badger
 
57 CH211-235F16
ctg7012
zC235F16
EPN details
Analysed
05-OCT-04
BX510311.6
finished
198245 CHORI-211        
  GAP (type-3) length unknown                  
59 RP71-1D17
ctg7108
bZ1D17
EPN details
Analysed
03-OCT-07
CU462877.9
finished
141952 RPCI-71        
  GAP (type-3) length unknown                  
61 DKEY-159B16
ctg7135
zK159B16
EPN details
Submitted to EMBL
13-JAN-09
CR407600.8
finished
74530 DanioKey        
62 CH211-152N19
ctg7135
zC152N19
EPN details
Analysed
01-OCT-03
BX005146.4
finished
180858 CHORI-211        
63 CH1073-234M2
ctg7135
zFD234M2
EPN details
Submitted to EMBL
12-JAN-09
CU695154.5
finished
18915 CHORI1073        
64 CH73-94H22
ctg7135
zH94H22
EPN details
Analysed
17-JAN-09
CU972518.7
finished
91842 CHORI-73        
  GAP (type-3) length unknown                  
66 DKEY-63P22
ctg7138
zK63P22
EPN details
Analysed
19-SEP-03
AL935307.9
finished
234744 DanioKey        
  GAP (type-3) length unknown                  
68 CH211-160E15
ctg7139
zC160E15
EPN details
Analysed
16-JAN-04
BX005088.4
finished
193489 CHORI-211        
  GAP (type-3) length unknown                  
70 DKEY-30H3
ctg7140
zK30H3
EPN details
Analysed
24-JUN-04
AL954845.21
finished
226343 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-01-15
find_overl...
badger
 
71 CH211-43F22
ctg7140
zC43F22
EPN details
Analysed
16-FEB-05
CR388074.9
finished
87841 CHORI-211        
  GAP (type-3) length unknown                  
73 CH211-233I11
ctg900
zC233I11
EPN details
Analysed
05-MAY-04
BX248325.7
finished
157207 CHORI-211        
74 CH211-278C10
ctg900
zC278C10
EPN details
Analysed
06-JUL-04
BX296542.12
finished
174884 CHORI-211        
  GAP (type-3) length unknown                  
76 DKEY-204C3
ctg946
zK204C3
EPN details
Analysed
21-APR-04
BX664714.16
finished
159633 DanioKey 3' / 5'
159633 / 2001
- / -
2000
0
Identified
2004-09-24
find_overl...
badger
 
77 DKEY-14B2
ctg946
zK14B2
EPN details
Analysed
05-OCT-04
BX663615.15
finished
212543 DanioKey        

Statistics

Clone Summary

Number of gaps
31
Gap types
type-3
31
Total clones
46
Clone HTGS Phases
finished
46
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
14,000
Total finished length of fin clones w/ overlap
7,735,377
Total finished length of fin clones w/o overlap
7,721,377
Total overlap length of fin+unfin clones
14,000
Total finished length of fin+unfin clones w/ overlap
7,735,377
Total finished length of fin+unfin clones w/o overlap
7,721,377

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/654oorsf