ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_8 (TPF updated: 2014-02-25)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH1073-237H9
ctg10515
zFD237H9
CU571312.5
finished
  GAP (type-3) length unknown    
3 CH211-227I1
ctg2222
zC227I1
AL935180.9
finished
4 CH211-207O15
ctg2222
zC207O15
AL954371.6
finished
  GAP (type-3) length unknown    
6 CH211-267J10
ctg2663
zC267J10
CR847806.15
finished
  GAP (type-3) length unknown    
8 DKEY-100J1
ctg2977
zK100J1
CR855220.13
finished
  GAP (type-3) length unknown    
10 DKEY-179C19
ctg3180
zK179C19
CR786581.30
finished
  GAP (type-3) length unknown    
12 DKEY-49H9
ctg5010
zK49H9
BX323451.12
finished
  GAP (type-3) length unknown    
14 DKEY-284O11
ctg5027
zK284O11
CT737172.20
finished
  GAP (type-3) length unknown    
16 CH211-228B23
ctg5046
zC228B23
CT025750.7
finished
  GAP (type-3) length unknown    
18 DKEY-150D12
ctg5053
zK150D12
CR382344.9
finished
  GAP (type-3) length unknown    
20 CH211-139N20
ctg6117
zC139N20
CU151879.11
finished
  GAP (type-3) length unknown    
22 DKEY-218M22
ctg6438
zK218M22
AL844179.12
finished
  GAP (type-3) length unknown    
24 RP71-30I22
ctg6506
bZ30I22
AL590148.8
finished
  GAP (type-3) length unknown    
26 DKEY-202C5
ctg6614
zK202C5
BX511191.4
finished
27 DKEY-78C7
ctg6614
zK78C7
BX005306.20
finished
  GAP (type-3) length unknown    
29 DKEY-24F17
ctg6619
zK24F17
BX005427.19
finished
30 DKEY-11I10
ctg6619
zK11I10
BX004761.10
finished
  GAP (type-3) length unknown    
32 CH211-57O7
ctg6661
zC57O7
AL935030.9
finished
  GAP (type-3) length unknown    
34 DKEY-70P6
ctg6662
zK70P6
AL831748.7
finished
  GAP (type-3) length unknown    
36 CH211-12A23
ctg6663
zC12A23
CR354558.20
finished
37 DKEYP-99G4
ctg6663
zKp99G4
CR847868.9
finished
38 DKEY-204K18
ctg6663
zK204K18
CR450728.8
finished
39 CH211-213D12
ctg6663
zC213D12
CR354552.8
finished
40 DKEY-79M5
ctg6663
zK79M5
BX000689.17
finished
41 CH211-270F13
ctg6663
zC270F13
BX294117.17
finished
42 RP71-20D11
ctg6663
bZ20D11
BX663511.8
finished
43 RP71-80I7
ctg6663
bZ80I7
BX545852.5
finished
44 DKEYP-22F11
ctg6663
zKp22F11
BX545918.4
finished
45 CH211-218O3
ctg6663
zC218O3
BX248319.5
finished
  GAP (type-3) length unknown    
47 CH211-113P5
ctg6664
zC113P5
BX470158.9
finished
48 CH211-235I18
ctg6664
zC235I18
AL953914.11
finished
  GAP (type-3) length unknown    
50 CH211-245M19
ctg6666
zC245M19
CR385090.8
finished
51 CH211-258C22
ctg6666
zC258C22
CR450779.8
finished
52 DKEY-205I12
ctg6666
zK205I12
BX957334.8
finished
  GAP (type-3) length unknown    
54 DKEY-163B6
ctg6685
zK163B6
CR627491.15
finished
  GAP (type-3) length unknown    
56 DKEY-95H16
ctg6717
zK95H16
CR382284.14
finished
57 DKEY-65O14
ctg6717
zK65O14
CR450704.7
finished
  GAP (type-3) length unknown    
59 DKEY-218P9
ctg6725
zK218P9
BX664746.10
finished
  GAP (type-3) length unknown    
61 DKEY-1K1
ctg6741
zK1K1
CR394564.8
finished
62 DKEY-14I6
ctg6741
zK14I6
CR450778.7
finished
  GAP (type-3) length unknown    
64 DKEY-120P15
ctg6742
zK120P15
AL954740.9
finished
65 CH211-39G8
ctg6742
zC39G8
BX936316.7
finished
66 RP71-1G9
ctg6742
bZ1G9
BX530098.6
finished
  GAP (type-3) length unknown    
68 DKEYP-24B8
ctg6743
zKp24B8
BX469929.9
finished
69 DKEY-13J14
ctg6743
zK13J14
AL954677.8
finished
70 CH211-207B9
ctg6743
zC207B9
BX294386.5
finished
  GAP (type-3) length unknown    
72 CH211-194C22
ctg6744
zC194C22
CR352327.13
finished
  GAP (type-3) length unknown    
74 CH211-247O1
ctg6745
zC247O1
AL935283.16
finished
  GAP (type-3) length unknown    
76 CH211-1F7
ctg6746
zC1F7
AL954819.21
finished
  GAP (type-3) length unknown    
78 DKEY-68D15
ctg685
zK68D15
CR759953.10
finished
  GAP (type-3) length unknown    
80 DKEY-281F2
ctg7026
zK281F2
CR847797.8
finished
  GAP (type-3) length unknown    
82 CH211-199O1
ctg7109
zC199O1
AL773601.11
finished
83 CH211-251A3
ctg7109
zC251A3
CR936338.6
finished
84 CH211-215B24
ctg7109
zC215B24
CR354582.14
finished
85 DKEY-255D8
ctg7109
zK255D8
CR388138.29
finished
  GAP (type-3) length unknown    
87 CH211-127E17
ctg7111
zC127E17
BX088532.7
finished
88 CH211-243G16
ctg7111
zC243G16
CR354438.9
finished
  GAP (type-3) length unknown    
90 CH211-192C1
ctg7120
zC192C1
BX572636.6
finished
  GAP (type-3) length unknown    
92 DKEY-48B5
ctg7179
zK48B5
BX323834.7
finished
  GAP (type-3) length unknown    
94 CH211-28A20
ctg7180
zC28A20
CR933520.10
finished
  GAP (type-3) length unknown    
96 CH211-25E11
ctg7181
zC25E11
CR361543.9
finished
  GAP (type-3) length unknown    
98 CH1073-179L3
ctg7181_1
zFD179L3
CU659961.7
finished
  GAP (type-3) length unknown    
100 DKEY-67K20
ctg7182
zK67K20
BX005025.16
finished
  GAP (type-3) length unknown    
102 DKEY-284M10
ctg788
zK284M10
BX248502.17
finished
  GAP (type-3) length unknown    
104 DKEY-11C8
ctg790
zK11C8
BX000471.7
finished
  GAP (type-3) length unknown    
106 DKEY-148L4
ctg791
zK148L4
BX537317.7
finished
  GAP (type-3) length unknown    
108 DKEY-150K1
ctg795
zK150K1
BX511146.6
finished
  GAP (type-3) length unknown    
110 CH211-199J6
ctg796
zC199J6
BX248323.8
finished
  GAP (type-3) length unknown    
112 CH73-98K10
ctg797
zH98K10
CT583703.4
finished
113 CH211-232D19
ctg797
zC232D19
BX247907.8
finished
  GAP (type-3) length unknown    
115 DKEY-21K19
ctg802
zK21K19
BX294377.10
finished
116 DKEY-114K23
ctg802
zK114K23
CR954296.5
finished
  GAP (type-3) length unknown    
118 CH73-231O19
ctg805
zH231O19
CT956088.5
finished
119 DKEY-71K18
ctg805
zK71K18
BX072558.7
finished
  GAP (type-3) length unknown    
121 CH73-68K5
ctg843
zH68K5
CU468732.5
finished
  GAP (type-3) length unknown    
123 CH211-202D20
ctg855
zC202D20
AL928736.5
finished
124 CH211-200N10
ctg855
zC200N10
BX276119.8
finished
  GAP (type-3) length unknown    
126 ZFOS-207B3
ctg857
zF207B3
CT027833.10
finished
  GAP (type-3) length unknown    
128 CH211-202G4
ctg857_1
zC202G4
CR385024.10
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 35316 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU571312.5 1 35316 +
35317 85316 2 N 50000 contig no
85317 244323 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL935180.9 1 159007 +
244324 367277 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL954371.6 1 122954 -
367278 417277 5 N 50000 contig no
417278 568732 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CR847806.15 1 151455 +
568733 618732 7 N 50000 contig no
618733 826261 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CR855220.13 1 207529 +
826262 876261 9 N 50000 contig no
876262 1042478 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CR786581.30 1 166217 +
1042479 1092478 11 N 50000 contig no
1092479 1303967 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 BX323451.12 1 211489 +
1303968 1353967 13 N 50000 contig no
1353968 1523538 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CT737172.20 1 169571 +
1523539 1573538 15 N 50000 contig no
1573539 1661878 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CT025750.7 1 88340 +
1661879 1711878 17 N 50000 contig no
1711879 1894268 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 CR382344.9 1 182390 +
1894269 1944268 19 N 50000 contig no
1944269 2102307 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 CU151879.11 1 158039 +
2102308 2152307 21 N 50000 contig no
2152308 2334412 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 AL844179.12 1 182105 +
2334413 2384412 23 N 50000 contig no
2384413 2525396 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AL590148.8 1 140984 +
2525397 2575396 25 N 50000 contig no
2575397 2655283 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 BX511191.4 1 79887 +
2655284 2788511 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 BX005306.20 1 133228 -
2788512 2838511 28 N 50000 contig no
2838512 2973362 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 BX005427.19 1 134851 +
2973363 3104203 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 BX004761.10 2001 132841 +
3104204 3154203 31 N 50000 contig no
3154204 3327681 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AL935030.9 1 173478 +
3327682 3377681 33 N 50000 contig no
3377682 3580038 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 AL831748.7 1 202357 +
3580039 3630038 35 N 50000 contig no
3630039 3807244 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 CR354558.20 1 177206 +
3807245 3881669 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 CR847868.9 72975 147399 +
3881670 4072694 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 CR450728.8 2001 193025 +
4072695 4096189 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 CR354552.8 2001 25495 +
4096190 4237715 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 BX000689.17 1 141526 -
4237716 4350249 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 BX294117.17 2001 114534 +
4350250 4426682 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 BX663511.8 2001 78433 +
4426683 4472498 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 BX545852.5 2001 47816 +
4472499 4619619 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 BX545918.4 2001 149121 +
4619620 4810792 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 45 BX248319.5 2001 193173 +
4810793 4860792 46 N 50000 contig no
4860793 4980275 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 48 BX470158.9 1 119483 +
4980276 5130012 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 48 AL953914.11 2001 151737 +
5130013 5180012 49 N 50000 contig no
5180013 5320234 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 CR385090.8 1 140222 -
5320235 5498215 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 CR450779.8 1 177981 -
5498216 5599499 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 50 - 52 BX957334.8 1 101284 -
5599500 5649499 53 N 50000 contig no
5649500 5893256 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CR627491.15 1 243757 +
5893257 5943256 55 N 50000 contig no
5943257 6149138 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 56 CR382284.14 1 205882 +
6149139 6154138 57 N 5000 No overlap in database    
6154139 6345577 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 CR450704.7 1 191439 +
6345578 6395577 59 N 50000 contig no
6395578 6501981 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 BX664746.10 1 106404 +
6501982 6551981 61 N 50000 contig no
6551982 6779456 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 63 CR394564.8 1 227475 +
6779457 6898211 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 63 CR450778.7 2001 120755 +
6898212 6948211 64 N 50000 contig no
6948212 7100158 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 AL954740.9 1 151947 -
7100159 7106010 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX936316.7 2001 7852 +
7106011 7260647 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 67 BX530098.6 2001 156637 +
7260648 7310647 68 N 50000 contig no
7310648 7459934 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 BX469929.9 1 149287 -
7459935 7644019 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 AL954677.8 2001 186085 -
7644020 7761371 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 BX294386.5 1 117352 -
7761372 7811371 72 N 50000 contig no
7811372 8014696 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 CR352327.13 1 203325 +
8014697 8064696 74 N 50000 contig no
8064697 8262623 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 AL935283.16 1 197927 +
8262624 8312623 76 N 50000 contig no
8312624 8490552 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 AL954819.21 1 177929 +
8490553 8540552 78 N 50000 contig no
8540553 8702884 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CR759953.10 1 162332 +
8702885 8752884 80 N 50000 contig no
8752885 8972797 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 CR847797.8 1 219913 +
8972798 9022797 82 N 50000 contig no
9022798 9224096 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 86 AL773601.11 1 201299 -
9224097 9226090 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 86 CR936338.6 2001 3994 +
9226091 9451164 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 86 CR354582.14 2001 227074 +
9451165 9681484 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 86 CR388138.29 2001 232320 +
9681485 9731484 87 N 50000 contig no
9731485 9847276 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 89 BX088532.7 1 115792 +
9847277 9981600 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 89 CR354438.9 2001 136324 +
9981601 10031600 90 N 50000 contig no
10031601 10201358 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 91 BX572636.6 1 169758 +
10201359 10251358 92 N 50000 contig no
10251359 10254863 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 BX323834.7 1 3505 +
10254864 10304863 94 N 50000 contig no
10304864 10470159 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 CR933520.10 1 165296 +
10470160 10520159 96 N 50000 contig no
10520160 10586968 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 CR361543.9 1 66809 +
10586969 10636968 98 N 50000 contig no
10636969 10670260 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 CU659961.7 1 33292 +
10670261 10720260 100 N 50000 contig no
10720261 10916635 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 101 BX005025.16 1 196375 +
10916636 10966635 102 N 50000 contig no
10966636 11181908 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 103 BX248502.17 1 215273 +
11181909 11231908 104 N 50000 contig no
11231909 11459800 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 105 - 105 BX000471.7 1 227892 +
11459801 11509800 106 N 50000 contig no
11509801 11700941 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 107 BX537317.7 1 191141 +
11700942 11750941 108 N 50000 contig no
11750942 11933677 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 109 BX511146.6 1 182736 +
11933678 11983677 110 N 50000 contig no
11983678 12161391 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 111 BX248323.8 1 177714 +
12161392 12211391 112 N 50000 contig no
12211392 12255963 113 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 114 CT583703.4 1 44572 +
12255964 12423493 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 113 - 114 BX247907.8 1 167530 -
12423494 12473493 115 N 50000 contig no
12473494 12670684 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 117 BX294377.10 1 197191 -
12670685 12741127 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 117 CR954296.5 2001 72443 +
12741128 12791127 118 N 50000 contig no
12791128 12826207 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 119 CT956088.5 1 35080 +
12826208 12831207 120 N 5000 No overlap in database    
12831208 13002571 121 FClick to retrieve finished assembled sequence in green bar: rank(s) 121 - 121 BX072558.7 1 171364 +
13002572 13052571 122 N 50000 contig no
13052572 13106167 123 FClick to retrieve finished assembled sequence in green bar: rank(s) 123 - 123 CU468732.5 1 53596 +
13106168 13156167 124 N 50000 contig no
13156168 13342909 125 FClick to retrieve finished assembled sequence in green bar: rank(s) 125 - 126 AL928736.5 1 186742 +
13342910 13379189 126 FClick to retrieve finished assembled sequence in green bar: rank(s) 125 - 126 BX276119.8 2001 38280 +
13379190 13429189 127 N 50000 contig no
13429190 13450053 128 FClick to retrieve finished assembled sequence in green bar: rank(s) 128 - 128 CT027833.10 1 20864 +
13450054 13500053 129 N 50000 contig no
13500054 13707563 130 FClick to retrieve finished assembled sequence in green bar: rank(s) 130 - 130 CR385024.10 1 207510 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
49
Gap types
type-3
49
Total clones
79
Clone HTGS Phases
finished
79
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
123,737
Total finished length of fin clones w/ overlap
11,371,288
Total finished length of fin clones w/o overlap
11,247,551
Total overlap length of fin+unfin clones
123,737
Total finished length of fin+unfin clones w/ overlap
11,371,288
Total finished length of fin+unfin clones w/o overlap
11,247,551

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Other links

* quick link - http://q.sanger.ac.uk/y2k6vsfi