ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_8 (TPF updated: 2016-09-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH1073-237H9
ctg10515
zFD237H9
CU571312.5
finished
  GAP (type-3) length unknown    
3 CH211-227I1
ctg2222
zC227I1
AL935180.9
finished
4 CH211-207O15
ctg2222
zC207O15
AL954371.6
finished
  GAP (type-3) length unknown    
6 CH211-267J10
ctg2663
zC267J10
CR847806.15
finished
  GAP (type-3) length unknown    
8 DKEY-100J1
ctg2977
zK100J1
CR855220.13
finished
  GAP (type-3) length unknown    
10 DKEY-179C19
ctg3180
zK179C19
CR786581.30
finished
  GAP (type-3) length unknown    
12 DKEY-49H9
ctg5010
zK49H9
BX323451.12
finished
  GAP (type-3) length unknown    
14 DKEY-284O11
ctg5027
zK284O11
CT737172.20
finished
  GAP (type-3) length unknown    
16 CH211-228B23
ctg5046
zC228B23
CT025750.7
finished
  GAP (type-3) length unknown    
18 CH211-139N20
ctg6117
zC139N20
CU151879.11
finished
  GAP (type-3) length unknown    
20 DKEY-218M22
ctg6438
zK218M22
AL844179.12
finished
  GAP (type-3) length unknown    
22 RP71-30I22
ctg6506
bZ30I22
AL590148.8
finished
  GAP (type-3) length unknown    
24 DKEY-202C5
ctg6614
zK202C5
BX511191.4
finished
25 DKEY-78C7
ctg6614
zK78C7
BX005306.20
finished
  GAP (type-3) length unknown    
27 DKEY-24F17
ctg6619
zK24F17
BX005427.19
finished
28 DKEY-11I10
ctg6619
zK11I10
BX004761.10
finished
  GAP (type-3) length unknown    
30 CH211-57O7
ctg6661
zC57O7
AL935030.9
finished
  GAP (type-3) length unknown    
32 DKEY-70P6
ctg6662
zK70P6
AL831748.7
finished
  GAP (type-3) length unknown    
34 CH211-12A23
ctg6663
zC12A23
CR354558.20
finished
35 DKEYP-99G4
ctg6663
zKp99G4
CR847868.9
finished
36 DKEY-204K18
ctg6663
zK204K18
CR450728.8
finished
37 CH211-213D12
ctg6663
zC213D12
CR354552.8
finished
38 DKEY-79M5
ctg6663
zK79M5
BX000689.17
finished
39 CH211-270F13
ctg6663
zC270F13
BX294117.17
finished
40 RP71-20D11
ctg6663
bZ20D11
BX663511.8
finished
41 RP71-80I7
ctg6663
bZ80I7
BX545852.5
finished
42 DKEYP-22F11
ctg6663
zKp22F11
BX545918.4
finished
43 CH211-218O3
ctg6663
zC218O3
BX248319.5
finished
  GAP (type-3) length unknown    
45 CH211-113P5
ctg6664
zC113P5
BX470158.9
finished
46 CH211-235I18
ctg6664
zC235I18
AL953914.11
finished
  GAP (type-3) length unknown    
48 CH211-245M19
ctg6666
zC245M19
CR385090.8
finished
49 CH211-258C22
ctg6666
zC258C22
CR450779.8
finished
50 DKEY-205I12
ctg6666
zK205I12
BX957334.8
finished
  GAP (type-3) length unknown    
52 DKEY-163B6
ctg6685
zK163B6
CR627491.15
finished
  GAP (type-3) length unknown    
54 DKEY-95H16
ctg6717
zK95H16
CR382284.14
finished
55 DKEY-65O14
ctg6717
zK65O14
CR450704.7
finished
  GAP (type-3) length unknown    
57 DKEY-218P9
ctg6725
zK218P9
BX664746.10
finished
  GAP (type-3) length unknown    
59 DKEY-1K1
ctg6741
zK1K1
CR394564.8
finished
60 DKEY-14I6
ctg6741
zK14I6
CR450778.7
finished
  GAP (type-3) length unknown    
62 DKEY-120P15
ctg6742
zK120P15
AL954740.9
finished
63 CH211-39G8
ctg6742
zC39G8
BX936316.7
finished
64 RP71-1G9
ctg6742
bZ1G9
BX530098.6
finished
  GAP (type-3) length unknown    
66 DKEYP-24B8
ctg6743
zKp24B8
BX469929.9
finished
67 DKEY-13J14
ctg6743
zK13J14
AL954677.8
finished
68 CH211-207B9
ctg6743
zC207B9
BX294386.5
finished
  GAP (type-3) length unknown    
70 CH211-194C22
ctg6744
zC194C22
CR352327.13
finished
  GAP (type-3) length unknown    
72 CH211-247O1
ctg6745
zC247O1
AL935283.16
finished
  GAP (type-3) length unknown    
74 CH211-1F7
ctg6746
zC1F7
AL954819.21
finished
  GAP (type-3) length unknown    
76 DKEY-68D15
ctg685
zK68D15
CR759953.10
finished
  GAP (type-3) length unknown    
78 DKEY-281F2
ctg7026
zK281F2
CR847797.8
finished
  GAP (type-3) length unknown    
80 CH211-199O1
ctg7109
zC199O1
AL773601.11
finished
81 CH211-251A3
ctg7109
zC251A3
CR936338.6
finished
82 CH211-215B24
ctg7109
zC215B24
CR354582.14
finished
83 DKEY-255D8
ctg7109
zK255D8
CR388138.29
finished
  GAP (type-3) length unknown    
85 CH211-127E17
ctg7111
zC127E17
BX088532.7
finished
86 CH211-243G16
ctg7111
zC243G16
CR354438.9
finished
  GAP (type-3) length unknown    
88 CH211-192C1
ctg7120
zC192C1
BX572636.6
finished
  GAP (type-3) length unknown    
90 DKEY-48B5
ctg7179
zK48B5
BX323834.7
finished
  GAP (type-3) length unknown    
92 CH211-28A20
ctg7180
zC28A20
CR933520.10
finished
  GAP (type-3) length unknown    
94 CH211-25E11
ctg7181
zC25E11
CR361543.9
finished
  GAP (type-3) length unknown    
96 CH1073-179L3
ctg7181_1
zFD179L3
CU659961.7
finished
  GAP (type-3) length unknown    
98 DKEY-67K20
ctg7182
zK67K20
BX005025.16
finished
  GAP (type-3) length unknown    
100 DKEY-284M10
ctg788
zK284M10
BX248502.17
finished
  GAP (type-3) length unknown    
102 DKEY-148L4
ctg791
zK148L4
BX537317.7
finished
  GAP (type-3) length unknown    
104 DKEY-150K1
ctg795
zK150K1
BX511146.6
finished
  GAP (type-3) length unknown    
106 CH211-199J6
ctg796
zC199J6
BX248323.8
finished
  GAP (type-3) length unknown    
108 CH73-98K10
ctg797
zH98K10
CT583703.4
finished
  GAP (type-3) length unknown    
110 DKEY-21K19
ctg802
zK21K19
BX294377.10
finished
111 DKEY-114K23
ctg802
zK114K23
CR954296.5
finished
  GAP (type-3) length unknown    
113 CH73-231O19
ctg805
zH231O19
CT956088.5
finished
114 DKEY-71K18
ctg805
zK71K18
BX072558.7
finished
  GAP (type-3) length unknown    
116 CH73-68K5
ctg843
zH68K5
CU468732.5
finished
  GAP (type-3) length unknown    
118 CH211-202D20
ctg855
zC202D20
AL928736.5
finished
119 CH211-200N10
ctg855
zC200N10
BX276119.8
finished
  GAP (type-3) length unknown    
121 ZFOS-207B3
ctg857
zF207B3
CT027833.10
finished
  GAP (type-3) length unknown    
123 CH211-202G4
ctg857_1
zC202G4
CR385024.10
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 35316 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU571312.5 1 35316 +
35317 85316 2 N 50000 contig no
85317 244323 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL935180.9 1 159007 +
244324 367277 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL954371.6 1 122954 -
367278 417277 5 N 50000 contig no
417278 568732 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CR847806.15 1 151455 +
568733 618732 7 N 50000 contig no
618733 826261 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CR855220.13 1 207529 +
826262 876261 9 N 50000 contig no
876262 1042478 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CR786581.30 1 166217 +
1042479 1092478 11 N 50000 contig no
1092479 1303967 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 BX323451.12 1 211489 +
1303968 1353967 13 N 50000 contig no
1353968 1523538 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CT737172.20 1 169571 +
1523539 1573538 15 N 50000 contig no
1573539 1661878 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CT025750.7 1 88340 +
1661879 1711878 17 N 50000 contig no
1711879 1869917 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 CU151879.11 1 158039 +
1869918 1919917 19 N 50000 contig no
1919918 2102022 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AL844179.12 1 182105 +
2102023 2152022 21 N 50000 contig no
2152023 2293006 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 AL590148.8 1 140984 +
2293007 2343006 23 N 50000 contig no
2343007 2422893 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 BX511191.4 1 79887 +
2422894 2556121 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 BX005306.20 1 133228 -
2556122 2606121 26 N 50000 contig no
2606122 2740972 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX005427.19 1 134851 +
2740973 2871813 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX004761.10 2001 132841 +
2871814 2921813 29 N 50000 contig no
2921814 3095291 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AL935030.9 1 173478 +
3095292 3145291 31 N 50000 contig no
3145292 3347648 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AL831748.7 1 202357 +
3347649 3397648 33 N 50000 contig no
3397649 3574854 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 CR354558.20 1 177206 +
3574855 3649279 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 CR847868.9 72975 147399 +
3649280 3840304 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 CR450728.8 2001 193025 +
3840305 3863799 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 CR354552.8 2001 25495 +
3863800 4005325 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 BX000689.17 1 141526 -
4005326 4117859 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 BX294117.17 2001 114534 +
4117860 4194292 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 BX663511.8 2001 78433 +
4194293 4240108 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 BX545852.5 2001 47816 +
4240109 4387229 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 BX545918.4 2001 149121 +
4387230 4578402 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 43 BX248319.5 2001 193173 +
4578403 4628402 44 N 50000 contig no
4628403 4747885 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 BX470158.9 1 119483 +
4747886 4897622 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 AL953914.11 2001 151737 +
4897623 4947622 47 N 50000 contig no
4947623 5087844 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 CR385090.8 1 140222 -
5087845 5265825 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 CR450779.8 1 177981 -
5265826 5367109 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 50 BX957334.8 1 101284 -
5367110 5417109 51 N 50000 contig no
5417110 5660866 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 CR627491.15 1 243757 +
5660867 5710866 53 N 50000 contig no
5710867 5916748 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CR382284.14 1 205882 +
5916749 5921748 55 N 5000 No overlap in database    
5921749 6113187 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 56 CR450704.7 1 191439 +
6113188 6163187 57 N 50000 contig no
6163188 6269591 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 BX664746.10 1 106404 +
6269592 6319591 59 N 50000 contig no
6319592 6547066 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 61 CR394564.8 1 227475 +
6547067 6665821 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 61 CR450778.7 2001 120755 +
6665822 6715821 62 N 50000 contig no
6715822 6867768 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 65 AL954740.9 1 151947 -
6867769 6873620 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 65 BX936316.7 2001 7852 +
6873621 7028257 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 65 BX530098.6 2001 156637 +
7028258 7078257 66 N 50000 contig no
7078258 7227544 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 BX469929.9 1 149287 -
7227545 7411629 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 AL954677.8 2001 186085 -
7411630 7528981 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 69 BX294386.5 1 117352 -
7528982 7578981 70 N 50000 contig no
7578982 7782306 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 CR352327.13 1 203325 +
7782307 7832306 72 N 50000 contig no
7832307 8030233 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 AL935283.16 1 197927 +
8030234 8080233 74 N 50000 contig no
8080234 8258162 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 AL954819.21 1 177929 +
8258163 8308162 76 N 50000 contig no
8308163 8470494 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CR759953.10 1 162332 +
8470495 8520494 78 N 50000 contig no
8520495 8740407 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CR847797.8 1 219913 +
8740408 8790407 80 N 50000 contig no
8790408 8991706 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 84 AL773601.11 1 201299 -
8991707 8993700 82 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 84 CR936338.6 2001 3994 +
8993701 9218774 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 84 CR354582.14 2001 227074 +
9218775 9449094 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 84 CR388138.29 2001 232320 +
9449095 9499094 85 N 50000 contig no
9499095 9614886 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 87 BX088532.7 1 115792 +
9614887 9749210 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 87 CR354438.9 2001 136324 +
9749211 9799210 88 N 50000 contig no
9799211 9968968 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 89 BX572636.6 1 169758 +
9968969 10018968 90 N 50000 contig no
10018969 10022473 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 91 BX323834.7 1 3505 +
10022474 10072473 92 N 50000 contig no
10072474 10237769 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 CR933520.10 1 165296 +
10237770 10287769 94 N 50000 contig no
10287770 10354578 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 CR361543.9 1 66809 +
10354579 10404578 96 N 50000 contig no
10404579 10437870 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 CU659961.7 1 33292 +
10437871 10487870 98 N 50000 contig no
10487871 10684245 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 BX005025.16 1 196375 +
10684246 10734245 100 N 50000 contig no
10734246 10949518 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 101 BX248502.17 1 215273 +
10949519 10999518 102 N 50000 contig no
10999519 11190659 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 103 BX537317.7 1 191141 +
11190660 11240659 104 N 50000 contig no
11240660 11423395 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 105 - 105 BX511146.6 1 182736 +
11423396 11473395 106 N 50000 contig no
11473396 11651109 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 107 BX248323.8 1 177714 +
11651110 11701109 108 N 50000 contig no
11701110 11745681 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 109 CT583703.4 1 44572 +
11745682 11795681 110 N 50000 contig no
11795682 11992872 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 112 BX294377.10 1 197191 -
11992873 12063315 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 112 CR954296.5 2001 72443 +
12063316 12113315 113 N 50000 contig no
12113316 12148395 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 114 CT956088.5 1 35080 +
12148396 12153395 115 N 5000 No overlap in database    
12153396 12324759 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 116 BX072558.7 1 171364 +
12324760 12374759 117 N 50000 contig no
12374760 12428355 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 118 CU468732.5 1 53596 +
12428356 12478355 119 N 50000 contig no
12478356 12665097 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 121 AL928736.5 1 186742 +
12665098 12701377 121 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 121 BX276119.8 2001 38280 +
12701378 12751377 122 N 50000 contig no
12751378 12772241 123 FClick to retrieve finished assembled sequence in green bar: rank(s) 123 - 123 CT027833.10 1 20864 +
12772242 12822241 124 N 50000 contig no
12822242 13029751 125 FClick to retrieve finished assembled sequence in green bar: rank(s) 125 - 125 CR385024.10 1 207510 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
47
Gap types
type-3
47
Total clones
76
Clone HTGS Phases
finished
76
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
121,737
Total finished length of fin clones w/ overlap
10,791,476
Total finished length of fin clones w/o overlap
10,669,739
Total overlap length of fin+unfin clones
121,737
Total finished length of fin+unfin clones w/ overlap
10,791,476
Total finished length of fin+unfin clones w/o overlap
10,669,739

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