ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_4 (TPF updated: 2015-06-19)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH211-159C17
ctg1183
zC159C17
BX571692.5
finished
2 DKEY-191C11
ctg1183
zK191C11
BX511214.8
finished
3 CH73-95L9
ctg1183
zH95L9
CT954331.7
finished
  GAP (type-3) length unknown    
5 CH211-9F23
ctg2496
zC9F23
CR392331.15
finished
  GAP (type-3) length unknown    
7 DKEY-158M22
ctg3095
zK158M22
CU459133.6
finished
  GAP (type-3) length unknown    
9 CH211-249I14
ctg325
zC249I14
BX640590.7
finished
10 CH211-51E12
ctg325
zC51E12
AL928834.15
finished
11 CH211-59M1
ctg325
zC59M1
AL845514.4
finished
  GAP (type-3) length unknown    
13 DKEY-145G5
ctg3301
zK145G5
CR854928.13
finished
  GAP (type-3) length unknown    
15 CH211-209H6
ctg3503
zC209H6
BX088581.11
finished
  GAP (type-3) length unknown    
17 CH211-204F4
ctg379
zC204F4
BX005107.4
finished
18 CH211-244B2
ctg379
zC244B2
BX784401.3
finished
  GAP (type-3) length unknown    
20 DKEY-200M9
ctg6029
zK200M9
BX004862.9
finished
  GAP (type-3) length unknown    
22 DKEY-223L3
ctg6383
zK223L3
CR388075.14
finished
  GAP (type-3) length unknown    
24 DKEY-13J15
ctg6410
zK13J15
AL954308.12
finished
  GAP (type-3) length unknown    
26 DKEY-48E10
ctg6415
zK48E10
BX649401.4
finished
  GAP (type-3) length unknown    
28 CH211-215E7
ctg6418
zC215E7
BX001003.6
finished
  GAP (type-3) length unknown    
30 RP71-1O16
ctg6485
bZ1O16
AL627249.13
finished
  GAP (type-3) length unknown    
32 CH211-133H2
ctg6530
zC133H2
AL928936.9
finished
33 DKEYP-18C4
ctg6530
zKp18C4
BX649408.3
finished
34 CH211-276H18
ctg6530
zC276H18
BX323868.6
finished
  GAP (type-3) length unknown    
36 CH211-284B12
ctg6581
zC284B12
BX470230.5
finished
  GAP (type-3) length unknown    
38 DKEY-99O1
ctg6603
zK99O1
BX470236.11
finished
39 CH211-232P6
ctg6603
zC232P6
BX649514.8
finished
  GAP (type-3) length unknown    
41 DKEYP-67G10
ctg6604
zKp67G10
BX465859.13
finished
  GAP (type-3) length unknown    
43 CH211-231H23
ctg6610
zC231H23
BX323015.6
finished
44 RP71-18J1
ctg6610
bZ18J1
CR925699.6
finished
  GAP (type-3) length unknown    
46 DKEY-35B7
ctg6617
zK35B7
CR855309.15
finished
  GAP (type-3) length unknown    
48 CH211-136G2
ctg7056
zC136G2
BX255970.8
finished
49 DKEY-201E17
ctg7056
zK201E17
BX510353.10
finished
  GAP (type-3) length unknown    
51 CH211-95O10
ctg7061
zC95O10
CR792414.6
finished
  GAP (type-3) length unknown    
53 CH211-243P21
ctg7102
zC243P21
BX649332.3
finished
  GAP (type-3) length unknown    
55 CH211-251O16
ctg7107
zC251O16
CR790375.9
finished
  GAP (type-3) length unknown    
57 DKEY-109H6
ctg7122
zK109H6
CR762442.10
finished
  GAP (type-3) length unknown    
59 CH211-234P1
ctg7148
zC234P1
BX296546.6
finished
60 DKEY-249D19
ctg7148
zK249D19
CR792427.8
finished
  GAP (type-3) length unknown    
62 DKEY-175K7
ctg7195
zK175K7
CT573070.13
finished
63 CH211-33H21
ctg7195
zC33H21
CT025717.13
finished
  GAP (type-3) length unknown    
65 DKEY-42F6
ctg7196
zK42F6
BX530412.8
finished
  GAP (type-3) length unknown    
67 CH211-240L19
ctg7205
zC240L19
BX321885.11
finished
  GAP (type-3) length unknown    
69 CH211-106K19
ctg7206
zC106K19
BX950180.6
finished
  GAP (type-3) length unknown    
71 CH211-13H4
ctg7207
zC13H4
BX897668.12
finished
  GAP (type-3) length unknown    
73 CH211-206H4
ctg7208
zC206H4
BX247901.12
finished
  GAP (type-3) length unknown    
75 DKEY-117O14
ctg7209
zK117O14
BX640577.17
finished
76 DKEY-28G6
ctg7209
zK28G6
BX571815.16
finished
77 CH211-15L13
ctg7209
zC15L13
BX470126.27
finished
  GAP (type-3) length unknown    
79 DKEY-61P9
ctg8007
zK61P9
BX005238.8
finished
  GAP (type-3) length unknown    
81 DKEY-263H8
ctg6515
zK263H8
CR450700.21
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 77033 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 BX571692.5 1 77033 +
77034 286364 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 BX511214.8 2001 211331 +
286365 291364 3 N 5000 No overlap in database    
291365 315795 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CT954331.7 1 24431 +
315796 365795 5 N 50000 contig no
365796 536073 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CR392331.15 1 170278 +
536074 586073 7 N 50000 contig no
586074 618592 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CU459133.6 1 32519 +
618593 668592 9 N 50000 contig no
668593 677268 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 BX640590.7 2001 10676 -
677269 865032 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 AL928834.15 2001 189764 -
865033 869026 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 AL845514.4 1 3994 -
869027 919026 13 N 50000 contig no
919027 922627 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CR854928.13 1 3601 +
922628 972627 15 N 50000 contig no
972628 1168921 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 BX088581.11 1 196294 +
1168922 1218921 17 N 50000 contig no
1218922 1406172 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 BX005107.4 1 187251 +
1406173 1411172 19 N 5000 No overlap in database    
1411173 1468485 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 BX784401.3 1 57313 +
1468486 1518485 21 N 50000 contig no
1518486 1692844 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 BX004862.9 1 174359 +
1692845 1742844 23 N 50000 contig no
1742845 1859336 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 CR388075.14 1 116492 +
1859337 1909336 25 N 50000 contig no
1909337 2132944 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 AL954308.12 1 223608 +
2132945 2182944 27 N 50000 contig no
2182945 2394761 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 BX649401.4 1 211817 +
2394762 2444761 29 N 50000 contig no
2444762 2657164 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 BX001003.6 1 212403 +
2657165 2707164 31 N 50000 contig no
2707165 2891854 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AL627249.13 1 184690 +
2891855 2941854 33 N 50000 contig no
2941855 3099560 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 AL928936.9 1 157706 +
3099561 3104560 35 N 5000 No overlap in database    
3104561 3201172 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 BX649408.3 1 96612 +
3201173 3362471 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 BX323868.6 2001 163299 +
3362472 3412471 38 N 50000 contig no
3412472 3586035 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 BX470230.5 1 173564 +
3586036 3636035 40 N 50000 contig no
3636036 3780558 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 BX470236.11 1 144523 +
3780559 3931046 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 42 BX649514.8 2001 152488 +
3931047 3981046 43 N 50000 contig no
3981047 4195251 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 BX465859.13 1 214205 +
4195252 4245251 45 N 50000 contig no
4245252 4394535 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 BX323015.6 1 149284 -
4394536 4542565 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 47 CR925699.6 2001 150030 +
4542566 4592565 48 N 50000 contig no
4592566 4777508 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 CR855309.15 1 184943 +
4777509 4827508 50 N 50000 contig no
4827509 4986263 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 BX255970.8 1 158755 +
4986264 5062262 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 BX510353.10 2001 77999 +
5062263 5112262 53 N 50000 contig no
5112263 5178857 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CR792414.6 1 66595 +
5178858 5228857 55 N 50000 contig no
5228858 5350906 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 56 BX649332.3 1 122049 +
5350907 5400906 57 N 50000 contig no
5400907 5554405 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 CR790375.9 1 153499 +
5554406 5604405 59 N 50000 contig no
5604406 5739556 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 CR762442.10 1 135151 +
5739557 5789556 61 N 50000 contig no
5789557 5963791 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 BX296546.6 1 174235 +
5963792 5968791 63 N 5000 No overlap in database    
5968792 6000050 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 CR792427.8 1 31259 +
6000051 6050050 65 N 50000 contig no
6050051 6196534 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 67 CT573070.13 1 146484 +
6196535 6329341 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 67 CT025717.13 34019 166825 +
6329342 6379341 68 N 50000 contig no
6379342 6597544 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 69 BX530412.8 1 218203 +
6597545 6647544 70 N 50000 contig no
6647545 6803193 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 BX321885.11 1 155649 +
6803194 6853193 72 N 50000 contig no
6853194 6923371 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 BX950180.6 1 70178 +
6923372 6973371 74 N 50000 contig no
6973372 7015933 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 BX897668.12 1 42562 +
7015934 7065933 76 N 50000 contig no
7065934 7167156 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 BX247901.12 1 101223 +
7167157 7217156 78 N 50000 contig no
7217157 7431334 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 BX640577.17 1 214178 +
7431335 7535073 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 BX571815.16 2001 105739 +
7535074 7686255 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 81 BX470126.27 2001 153182 +
7686256 7736255 82 N 50000 contig no
7736256 7903121 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 83 BX005238.8 1 166866 +
7903122 7953121 84 N 50000 contig no
7953122 8070301 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 CR450700.21 1 117180 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
33
Gap types
type-3
33
Total clones
48
Clone HTGS Phases
finished
48
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
52,020
Total finished length of fin clones w/ overlap
6,452,319
Total finished length of fin clones w/o overlap
6,400,299
Total overlap length of fin+unfin clones
52,020
Total finished length of fin+unfin clones w/ overlap
6,452,319
Total finished length of fin+unfin clones w/o overlap
6,400,299

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Other links

* quick link - http://q.sanger.ac.uk/n0pruupi