ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_3 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH211-284P22
ctg234
zC284P22
EPN details
AL953878.19
finished
  GAP (type-3) length unknown    
3 DKEY-115A2
ctg237
zK115A2
EPN details
CR388150.14
finished
4 CH211-137K18
ctg237
zC137K18
EPN details
BX005166.14
finished
5 DKEY-208D4
ctg237
zK208D4
EPN details
BX649432.8
finished
  GAP (type-3) length unknown    
7 CH211-172D2
ctg239
zC172D2
EPN details
BX005285.12
finished
  GAP (type-3) length unknown    
9 CH211-201B9
ctg2411
zC201B9
EPN details
BX000704.26
finished
  GAP (type-3) length unknown    
11 DKEY-21E10
ctg246
zK21E10
EPN details
BX936327.3
finished
  GAP (type-3) length unknown    
13 DKEY-3N15
ctg250
zK3N15
EPN details
BX005394.8
finished
  GAP (type-3) length unknown    
15 DKEY-65D16
ctg251
zK65D16
EPN details
CR388069.10
finished
16 DKEYP-121E7
ctg251
zKp121E7
EPN details
CR846084.6
finished
  GAP (type-3) length unknown    
18 CH211-42I14
ctg259
zC42I14
EPN details
BX901909.5
finished
19 CH211-1C10
ctg259
zC1C10
EPN details
BX936331.6
finished
20 DKEY-29M9
ctg259
zK29M9
EPN details
CR847570.9
finished
  GAP (type-3) length unknown    
22 CH211-271N3
ctg261
zC271N3
EPN details
AL935284.13
finished
23 CH211-134G21
ctg261
zC134G21
EPN details
BX323888.8
finished
  GAP (type-3) length unknown    
25 CH211-207G22
ctg268
zC207G22
EPN details
AL953901.15
finished
26 CH211-261F22
ctg268
zC261F22
EPN details
AL837515.9
finished
  GAP (type-3) length unknown    
28 DKEY-262M9
ctg2720
zK262M9
EPN details
CR392338.16
finished
29 DKEYP-86B5
ctg2720
zKp86B5
EPN details
CR391929.9
finished
  GAP (type-3) length unknown    
31 CH211-280J3
ctg276
zC280J3
EPN details
AL954851.5
finished
32 CH211-156N19
ctg276
zC156N19
EPN details
CR450810.5
finished
33 CH211-74F16
ctg276
zC74F16
EPN details
BX936324.6
finished
  GAP (type-3) length unknown    
35 DKEY-148M7
ctg2761
zK148M7
EPN details
BX001006.7
finished
  GAP (type-3) length unknown    
37 DKEY-264C11
ctg277
zK264C11
EPN details
CT573470.5
unfinished
38 CH211-284C12
ctg277
zC284C12
EPN details
BX901956.4
finished
  GAP (type-3) length unknown    
40 DKEYP-55A5
ctg280
zKp55A5
EPN details
BX323078.8
finished
41 DKEY-162L4
ctg280
zK162L4
EPN details
BX004764.8
finished
42 RP71-84P16
ctg280
bZ84P16
EPN details
BX470081.7
finished
43 DKEY-231K15
ctg280
zK231K15
EPN details
CR381655.6
finished
44 DKEY-165J6
ctg280
zK165J6
EPN details
CR391904.14
finished
  GAP (type-3) length unknown    
46 DKEY-215O18
ctg282
zK215O18
EPN details
BX649211.10
finished
47 CH211-129K16
ctg282
zC129K16
EPN details
BX005142.4
finished
48 CH211-191E5
ctg282
zC191E5
EPN details

-
49 CH211-195G24
ctg282
zC195G24
EPN details
AL928885.9
finished
50 DKEY-259B21
ctg282
zK259B21
EPN details
BX276082.6
finished
51 CH73-169E7
ctg282
zH169E7
EPN details
FQ311884.3
finished
  GAP (type-3) length unknown    
53 CH211-159A10
ctg2967
zC159A10
EPN details
BX936358.10
finished
54 CH211-265H2
ctg2967
zC265H2
EPN details
CR792442.8
finished
  GAP (type-3) length unknown    
56 CH211-66I5
ctg307
zC66I5
EPN details
BX914209.18
finished
  GAP (type-3) length unknown    
58 CH211-239C9
ctg312
zC239C9
EPN details
AL935316.7
finished
59 CH211-164J3
ctg312
zC164J3
EPN details
AL772144.4
finished
60 CH211-13O8
ctg312
zC13O8
EPN details
BX908786.9
finished
  GAP (type-3) length unknown    
62 CH211-172J16
ctg318
zC172J16
EPN details
AL935041.4
finished
  GAP (type-3) length unknown    
64 DKEYP-47G11
ctg319
zKp47G11
EPN details
BX323460.10
finished
65 RP71-26F1
ctg319
bZ26F1
EPN details
CR847943.15
finished
  GAP (type-3) length unknown    
67 DKEY-66M24
ctg322
zK66M24
EPN details
AL935265.4
finished
68 CH211-180H17
ctg322
zC180H17
EPN details
BX005094.3
finished
  GAP (type-3) length unknown    
70 CH211-222O4
ctg327
zC222O4
EPN details
BX004760.10
finished
  GAP (type-3) length unknown    
72 CH211-245M20
ctg3283
zC245M20
EPN details
CR381658.11
finished
  GAP (type-3) length unknown    
74 DKEY-18G4
ctg329
zK18G4
EPN details
BX119930.5
finished
  GAP (type-3) length unknown    
76 CH211-160D19
ctg332
zC160D19
EPN details
BX000702.11
finished
  GAP (type-3) length unknown    
78 CH211-11K18
ctg5029
zC11K18
EPN details
BX511232.6
finished
  GAP (type-3) length unknown    
80 CH211-14A17
ctg5031
zC14A17
EPN details
AL772295.6
finished
  GAP (type-3) length unknown    
82 CH211-106H11
ctg5035
zC106H11
EPN details
BX248081.12
finished
  GAP (type-3) length unknown    
84 CH211-270E19
ctg6066
zC270E19
EPN details
CU302362.10
finished
  GAP (type-3) length unknown    
86 DKEY-22A20
ctg6121
zK22A20
EPN details
CR847792.4
finished
  GAP (type-3) length unknown    
88 DKEY-5I18
ctg6404
zK5I18
EPN details
BX936360.5
finished
89 DKEY-45B6
ctg6404
zK45B6
EPN details
BX908387.8
finished
90 CH211-232C12
ctg6404
zC232C12
EPN details
AL935289.4
finished
  GAP (type-3) length unknown    
92 CH211-113F11
ctg6777
zC113F11
EPN details
AL953863.13
finished
93 CH211-155C19
ctg6777
zC155C19
EPN details
AL954661.10
finished
94 CH211-233G21
ctg6777
zC233G21
EPN details
AL928800.5
finished
95 CH211-146K13
ctg6777
zC146K13
EPN details
AL845303.11
finished
  GAP (type-3) length unknown    
97 DKEY-87M9
ctg682
zK87M9
EPN details
CR352221.10
finished
  GAP (type-3) length unknown    
99 CH211-215J7
ctg710
zC215J7
EPN details
BX004790.9
finished
100 DKEYP-77A12
ctg710
zKp77A12
EPN details
BX323576.9
finished
  GAP (type-3) length unknown    
102 CH211-159O22
ctg6644
zC159O22
EPN details
AL929542.9
finished
  GAP (type-3) length unknown    
104 CH73-137D22
ctg6644_1
zH137D22
EPN details
CU062482.10
finished
105 CH211-87F11
ctg6644_1
zC87F11
EPN details
BX957349.7
finished
  GAP (type-3) length unknown    
107 CH73-364H19
ctg21_1
zH364H19
EPN details
FP236334.12
finished
  GAP (type-3) length unknown    
109 CH211-182P21
ctg321_1
zC182P21
EPN details
CT573439.9
finished
  GAP (type-3) length unknown    
111 DKEY-199M17
CTG321_2
zK199M17
EPN details
CU179664.10
finished
112 CH211-196J10
CTG321_2
zC196J10
EPN details
CU179639.8
finished
  GAP (type-3) length unknown    
114 DKEYP-45C3
ctg252_1
zKp45C3
EPN details
CT573435.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 158134 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL953878.19 1 158134 +
158135 208134 2 N 50000 contig no
208135 379098 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR388150.14 1 170964 +
379099 384098 4 N 5000 No overlap in database    
384099 562111 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX005166.14 1 178013 +
562112 567111 6 N 5000 No overlap in database    
567112 672899 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX649432.8 1 105788 +
672900 722899 8 N 50000 contig no
722900 868678 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 BX005285.12 1 145779 +
868679 918678 10 N 50000 contig no
918679 1110594 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 BX000704.26 1 191916 +
1110595 1160594 12 N 50000 contig no
1160595 1266439 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 BX936327.3 1 105845 +
1266440 1316439 14 N 50000 contig no
1316440 1507014 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 BX005394.8 1 190575 +
1507015 1557014 16 N 50000 contig no
1557015 1776220 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 CR388069.10 1 219206 +
1776221 1851450 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 CR846084.6 2001 77230 +
1851451 1901450 19 N 50000 contig no
1901451 1991666 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 BX901909.5 1 90216 +
1991667 2153472 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 BX936331.6 2001 163806 +
2153473 2275576 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 22 CR847570.9 2001 124104 +
2275577 2325576 23 N 50000 contig no
2325577 2497132 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 AL935284.13 1 171556 -
2497133 2673739 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 BX323888.8 2001 178607 +
2673740 2723739 26 N 50000 contig no
2723740 2920512 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AL953901.15 1 196773 +
2920513 3072492 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AL837515.9 1 151980 -
3072493 3122492 29 N 50000 contig no
3122493 3260917 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 31 CR392338.16 1 138425 +
3260918 3482641 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 31 CR391929.9 2001 223724 +
3482642 3532641 32 N 50000 contig no
3532642 3709862 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 AL954851.5 1 177221 +
3709863 3753611 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR450810.5 2001 45749 +
3753612 3905923 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 BX936324.6 2001 154312 +
3905924 3955923 36 N 50000 contig no
3955924 4149920 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 BX001006.7 1 193997 +
4149921 4199920 38 N 50000 contig no
4199921 4249920 39 N 50000 clone no
4249921 4446962 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 BX901956.4 1 197042 +
4446963 4496962 41 N 50000 contig no
4496963 4669070 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 46 BX323078.8 2001 174108 -
4669071 4907721 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 46 BX004764.8 1 238651 +
4907722 4990267 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 46 BX470081.7 2001 84546 +
4990268 5080447 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 46 CR381655.6 2001 92180 +
5080448 5225838 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 46 CR391904.14 2001 147391 +
5225839 5275838 47 N 50000 contig no
5275839 5401830 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 BX649211.10 1 125992 +
5401831 5570030 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 BX005142.4 2001 170200 +
5570031 5620030 50 N 50000 clone yes
5620031 5816887 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 AL928885.9 1 196857 +
5816888 5889998 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 BX276082.6 2001 75111 +
5889999 5894998 53 N 5000 No overlap in database    
5894999 5933962 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 FQ311884.3 1 38964 +
5933963 5983962 55 N 50000 contig no
5983963 6149636 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 BX936358.10 1 165674 +
6149637 6233931 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 CR792442.8 2001 86295 +
6233932 6283931 58 N 50000 contig no
6283932 6445919 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 59 BX914209.18 1 161988 +
6445920 6495919 60 N 50000 contig no
6495920 6670806 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 AL935316.7 1 174887 +
6670807 6675806 62 N 5000 No overlap in database    
6675807 6829643 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 64 AL772144.4 1 153837 -
6829644 6948673 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 64 BX908786.9 2001 121030 +
6948674 6998673 65 N 50000 contig no
6998674 7154526 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 AL935041.4 1 155853 +
7154527 7204526 67 N 50000 contig no
7204527 7406543 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 69 BX323460.10 1 202017 +
7406544 7471774 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 69 CR847943.15 2001 67231 +
7471775 7521774 70 N 50000 contig no
7521775 7718911 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 AL935265.4 1 197137 +
7718912 7723911 72 N 5000 No overlap in database    
7723912 7879342 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 BX005094.3 1 155431 +
7879343 7929342 74 N 50000 contig no
7929343 8119562 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 BX004760.10 1 190220 +
8119563 8169562 76 N 50000 contig no
8169563 8328694 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CR381658.11 1 159132 +
8328695 8378694 78 N 50000 contig no
8378695 8565012 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 BX119930.5 1 186318 +
8565013 8615012 80 N 50000 contig no
8615013 8776916 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 BX000702.11 1 161904 +
8776917 8826916 82 N 50000 contig no
8826917 8998759 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 83 BX511232.6 1 171843 +
8998760 9048759 84 N 50000 contig no
9048760 9161909 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 AL772295.6 1 113150 +
9161910 9211909 86 N 50000 contig no
9211910 9386234 87 FClick to retrieve finished assembled sequence in green bar: rank(s) 87 - 87 BX248081.12 1 174325 +
9386235 9436234 88 N 50000 contig no
9436235 9596457 89 FClick to retrieve finished assembled sequence in green bar: rank(s) 89 - 89 CU302362.10 1 160223 +
9596458 9646457 90 N 50000 contig no
9646458 9752545 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 91 CR847792.4 1 106088 +
9752546 9802545 92 N 50000 contig no
9802546 9873366 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 95 BX936360.5 1 70821 -
9873367 10083990 94 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 95 BX908387.8 2001 212624 +
10083991 10236164 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 95 AL935289.4 2001 154174 +
10236165 10286164 96 N 50000 contig no
10286165 10447978 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 AL953863.13 2001 163814 -
10447979 10511764 98 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 AL954661.10 2001 65786 -
10511765 10663644 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 AL928800.5 2001 153880 -
10663645 10717660 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 100 AL845303.11 1 54016 -
10717661 10767660 101 N 50000 contig no
10767661 10951249 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 102 CR352221.10 1 183589 +
10951250 11001249 103 N 50000 contig no
11001250 11210915 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 104 - 105 BX004790.9 1 209666 -
11210916 11371984 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 104 - 105 BX323576.9 2001 163069 +
11371985 11421984 106 N 50000 contig no
11421985 11502565 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 107 AL929542.9 1 80581 +
11502566 11552565 108 N 50000 contig no
11552566 11675180 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 110 CU062482.10 1 122615 +
11675181 11714457 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 110 BX957349.7 2001 41277 +
11714458 11764457 111 N 50000 contig no
11764458 11866857 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 112 - 112 FP236334.12 1 102400 +
11866858 11916857 113 N 50000 contig no
11916858 11927080 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 114 CT573439.9 1 10223 +
11927081 11977080 115 N 50000 contig no
11977081 12045647 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 117 CU179664.10 2001 70567 -
12045648 12246337 117 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 117 CU179639.8 1 200690 -
12246338 12296337 118 N 50000 contig no
12296338 12309041 119 FClick to retrieve finished assembled sequence in green bar: rank(s) 119 - 119 CT573435.8 1 12704 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH211-284P22
ctg234
zC284P22
EPN details
Submitted to EMBL
12-JAN-09
AL953878.19
finished
158134 CHORI-211        
  GAP (type-3) length unknown                  
3 DKEY-115A2
ctg237
zK115A2
EPN details
Analysed
03-FEB-06
CR388150.14
finished
170964 DanioKey        
4 CH211-137K18
ctg237
zC137K18
EPN details
Analysed
05-MAY-04
BX005166.14
finished
178013 CHORI-211        
5 DKEY-208D4
ctg237
zK208D4
EPN details
Analysed
25-JUN-05
BX649432.8
finished
105788 DanioKey        
  GAP (type-3) length unknown                  
7 CH211-172D2
ctg239
zC172D2
EPN details
Analysed
24-FEB-04
BX005285.12
finished
145779 CHORI-211        
  GAP (type-3) length unknown                  
9 CH211-201B9
ctg2411
zC201B9
EPN details
Analysed
14-JUN-05
BX000704.26
finished
191916 CHORI-211        
  GAP (type-3) length unknown                  
11 DKEY-21E10
ctg246
zK21E10
EPN details
Analysed
25-JAN-05
BX936327.3
finished
105845 DanioKey        
  GAP (type-3) length unknown                  
13 DKEY-3N15
ctg250
zK3N15
EPN details
Analysed
21-FEB-04
BX005394.8
finished
190575 DanioKey        
  GAP (type-3) length unknown                  
15 DKEY-65D16
ctg251
zK65D16
EPN details
Analysed
11-MAY-05
CR388069.10
finished
219206 DanioKey 3' / 5'
219206 / 2001
- / -
2000
0
Identified
2005-08-26
find_overl...
badger
 
16 DKEYP-121E7
ctg251
zKp121E7
EPN details
Analysed
17-SEP-05
CR846084.6
finished
77230 DanioKeypilot        
  GAP (type-3) length unknown                  
18 CH211-42I14
ctg259
zC42I14
EPN details
Analysed
31-MAY-05
BX901909.5
finished
90216 CHORI-211 3' / 5'
90216 / 2001
- / -
2000
0
Identified
2005-03-04
find_overl...
badger
 
19 CH211-1C10
ctg259
zC1C10
EPN details
Analysed
17-JUN-05
BX936331.6
finished
163806 CHORI-211 3' / 5'
163806 / 2001
- / -
2000
0
Identified
2005-07-29
find_overl...
badger
 
20 DKEY-29M9
ctg259
zK29M9
EPN details
Analysed
20-AUG-05
CR847570.9
finished
124104 DanioKey        
  GAP (type-3) length unknown                  
22 CH211-271N3
ctg261
zC271N3
EPN details
Analysed
07-AUG-03
AL935284.13
finished
171556 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2004-05-30
find_overl...
badger
 
23 CH211-134G21
ctg261
zC134G21
EPN details
Analysed
17-JUN-04
BX323888.8
finished
178607 CHORI-211        
  GAP (type-3) length unknown                  
25 CH211-207G22
ctg268
zC207G22
EPN details
Analysed
29-OCT-05
AL953901.15
finished
196773 CHORI-211 3' / 3'
196773 / 151980
- / -
2000
0
Identified
2005-11-01
find_overl...
badger
 
26 CH211-261F22
ctg268
zC261F22
EPN details
Analysed
19-AUG-03
AL837515.9
finished
153980 CHORI-211        
  GAP (type-3) length unknown                  
28 DKEY-262M9
ctg2720
zK262M9
EPN details
Analysed
24-FEB-06
CR392338.16
finished
138425 DanioKey 3' / 5'
138425 / 2001
- / -
2000
0
Identified
2006-03-09
find_overl...
badger
 
29 DKEYP-86B5
ctg2720
zKp86B5
EPN details
Analysed
07-JUN-05
CR391929.9
finished
223724 DanioKeypilot        
  GAP (type-3) length unknown                  
31 CH211-280J3
ctg276
zC280J3
EPN details
Analysed
08-AUG-03
AL954851.5
finished
177221 CHORI-211 3' / 5'
177221 / 2001
- / -
2000
0
Identified
2005-05-14
find_overl...
badger
 
32 CH211-156N19
ctg276
zC156N19
EPN details
Analysed
21-JUL-05
CR450810.5
finished
45749 CHORI-211 3' / 5'
45749 / 2001
- / -
2000
0
Identified
2005-05-14
find_overl...
badger
 
33 CH211-74F16
ctg276
zC74F16
EPN details
Analysed
17-MAR-05
BX936324.6
finished
154312 CHORI-211        
  GAP (type-3) length unknown                  
35 DKEY-148M7
ctg2761
zK148M7
EPN details
Analysed
29-OCT-05
BX001006.7
finished
193997 DanioKey        
  GAP (type-3) length unknown                  
37 DKEY-264C11
ctg277
zK264C11
EPN details
Cancelled
12-JUL-11
CT573470.5
unfinished
214420 DanioKey        
38 CH211-284C12
ctg277
zC284C12
EPN details
Analysed
23-MAR-05
BX901956.4
finished
197042 CHORI-211        
  GAP (type-3) length unknown                  
40 DKEYP-55A5
ctg280
zKp55A5
EPN details
Analysed
19-MAY-04
BX323078.8
finished
174108 DanioKeypilot 5' / 5'
2001 / 1
- / -
2005
0.25
Identified
2004-05-13
find_overl...
badger
 
41 DKEY-162L4
ctg280
zK162L4
EPN details
Analysed
28-FEB-04
BX004764.8
finished
238651 DanioKey 3' / 5'
238651 / 2001
- / -
2001
0.05
Identified
2005-07-30
find_overl...
badger
 
42 RP71-84P16
ctg280
bZ84P16
EPN details
Analysed
27-OCT-04
BX470081.7
finished
84546 RPCI-71 3' / 5'
84546 / 2001
- / -
2000
0
Identified
2005-11-01
find_overl...
badger
 
43 DKEY-231K15
ctg280
zK231K15
EPN details
Analysed
29-OCT-05
CR381655.6
finished
92180 DanioKey 3' / 5'
92180 / 2001
- / -
2000
0
Identified
2005-11-01
find_overl...
badger
 
44 DKEY-165J6
ctg280
zK165J6
EPN details
Analysed
20-SEP-05
CR391904.14
finished
147391 DanioKey        
  GAP (type-3) length unknown                  
46 DKEY-215O18
ctg282
zK215O18
EPN details
Analysed
19-OCT-04
BX649211.10
finished
125992 DanioKey 3' / 5'
125992 / 2001
- / -
2000
0
Identified
2004-10-01
find_overl...
badger
 
47 CH211-129K16
ctg282
zC129K16
EPN details
Analysed
05-MAY-04
BX005142.4
finished
170200 CHORI-211        
48 CH211-191E5
ctg282
zC191E5
EPN details
Cancelled
12-JUL-11

-
- CHORI-211        
49 CH211-195G24
ctg282
zC195G24
EPN details
Analysed
06-AUG-03
AL928885.9
finished
196857 CHORI-211 3' / 5'
196857 / 2001
- / -
2000
0
Identified
2004-02-18
find_overl...
badger
 
50 DKEY-259B21
ctg282
zK259B21
EPN details
Analysed
18-MAR-04
BX276082.6
finished
75111 DanioKey        
51 CH73-169E7
ctg282
zH169E7
EPN details
Analysed
07-DEC-10
FQ311884.3
finished
38964 CHORI-73        
  GAP (type-3) length unknown                  
53 CH211-159A10
ctg2967
zC159A10
EPN details
Analysed
13-SEP-05
BX936358.10
finished
165674 CHORI-211 3' / 5'
165674 / 2001
- / -
2000
0
Identified
2006-06-03
find_overl...
badger
 
54 CH211-265H2
ctg2967
zC265H2
EPN details
Analysed
01-JUN-06
CR792442.8
finished
86295 CHORI-211        
  GAP (type-3) length unknown                  
56 CH211-66I5
ctg307
zC66I5
EPN details
Analysed
25-MAY-06
BX914209.18
finished
161988 CHORI-211        
  GAP (type-3) length unknown                  
58 CH211-239C9
ctg312
zC239C9
EPN details
Analysed
01-OCT-03
AL935316.7
finished
174887 CHORI-211        
59 CH211-164J3
ctg312
zC164J3
EPN details
Submitted to EMBL
12-JAN-09
AL772144.4
finished
153837 CHORI-211 5' / 5'
1 / 2001
- / -
2001
0.05
Identified
2006-03-09
find_overl...
badger
 
60 CH211-13O8
ctg312
zC13O8
EPN details
Analysed
07-FEB-06
BX908786.9
finished
121030 CHORI-211        
  GAP (type-3) length unknown                  
62 CH211-172J16
ctg318
zC172J16
EPN details
Analysed
14-FEB-03
AL935041.4
finished
155853 CHORI-211        
  GAP (type-3) length unknown                  
64 DKEYP-47G11
ctg319
zKp47G11
EPN details
Analysed
05-MAY-04
BX323460.10
finished
202017 DanioKeypilot 3' / 5'
202017 / 2001
- / -
2000
0
Identified
2005-12-15
find_overl...
badger
 
65 RP71-26F1
ctg319
bZ26F1
EPN details
Analysed
15-DEC-05
CR847943.15
finished
67231 RPCI-71        
  GAP (type-3) length unknown                  
67 DKEY-66M24
ctg322
zK66M24
EPN details
Analysed
02-SEP-03
AL935265.4
finished
197137 DanioKey        
68 CH211-180H17
ctg322
zC180H17
EPN details
Analysed
21-NOV-03
BX005094.3
finished
155431 CHORI-211        
  GAP (type-3) length unknown                  
70 CH211-222O4
ctg327
zC222O4
EPN details
Analysed
25-MAR-04
BX004760.10
finished
190220 CHORI-211        
  GAP (type-3) length unknown                  
72 CH211-245M20
ctg3283
zC245M20
EPN details
Analysed
08-NOV-05
CR381658.11
finished
159132 CHORI-211        
  GAP (type-3) length unknown                  
74 DKEY-18G4
ctg329
zK18G4
EPN details
Analysed
30-JUN-04
BX119930.5
finished
186318 DanioKey        
  GAP (type-3) length unknown                  
76 CH211-160D19
ctg332
zC160D19
EPN details
Analysed
31-MAR-04
BX000702.11
finished
161904 CHORI-211        
  GAP (type-3) length unknown                  
78 CH211-11K18
ctg5029
zC11K18
EPN details
Submitted to EMBL
12-JAN-09
BX511232.6
finished
171843 CHORI-211        
  GAP (type-3) length unknown                  
80 CH211-14A17
ctg5031
zC14A17
EPN details
Submitted to EMBL
12-JAN-09
AL772295.6
finished
113150 CHORI-211        
  GAP (type-3) length unknown                  
82 CH211-106H11
ctg5035
zC106H11
EPN details
Submitted to EMBL
12-JAN-09
BX248081.12
finished
174325 CHORI-211        
  GAP (type-3) length unknown                  
84 CH211-270E19
ctg6066
zC270E19
EPN details
Analysed
11-JUL-07
CU302362.10
finished
160223 CHORI-211        
  GAP (type-3) length unknown                  
86 DKEY-22A20
ctg6121
zK22A20
EPN details
Analysed
19-MAR-05
CR847792.4
finished
106088 DanioKey        
  GAP (type-3) length unknown                  
88 DKEY-5I18
ctg6404
zK5I18
EPN details
Analysed
07-JUL-04
BX936360.5
finished
70821 DanioKey 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-11-01
find_overl...
badger
 
89 DKEY-45B6
ctg6404
zK45B6
EPN details
Analysed
29-OCT-05
BX908387.8
finished
212624 DanioKey 3' / 5'
212624 / 2001
- / -
2000
0
Identified
2005-11-01
find_overl...
badger
 
90 CH211-232C12
ctg6404
zC232C12
EPN details
Analysed
01-AUG-03
AL935289.4
finished
154174 CHORI-211        
  GAP (type-3) length unknown                  
92 CH211-113F11
ctg6777
zC113F11
EPN details
Analysed
19-NOV-03
AL953863.13
finished
163814 CHORI-211 5' / 3'
2001 / 65786
- / -
2000
0.05
Commented
2005-02-10
edit_overl...
jpa
 
93 CH211-155C19
ctg6777
zC155C19
EPN details
Analysed
07-NOV-03
AL954661.10
finished
65786 CHORI-211 5' / 3'
2001 / 153880
- / -
2000
0
Identified
2003-06-23
find_overl...
badger
 
94 CH211-233G21
ctg6777
zC233G21
EPN details
Submitted to EMBL
12-JAN-09
AL928800.5
finished
153880 CHORI-211 5' / 3'
2001 / 54016
- / -
2000
0
Identified
2003-05-12
find_overl...
badger
 
95 CH211-146K13
ctg6777
zC146K13
EPN details
Analysed
20-MAY-03
AL845303.11
finished
54016 CHORI-211        
  GAP (type-3) length unknown                  
97 DKEY-87M9
ctg682
zK87M9
EPN details
Analysed
12-APR-06
CR352221.10
finished
183589 DanioKey        
  GAP (type-3) length unknown                  
99 CH211-215J7
ctg710
zC215J7
EPN details
Analysed
28-FEB-04
BX004790.9
finished
209666 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2004-08-28
find_overl...
badger
 
100 DKEYP-77A12
ctg710
zKp77A12
EPN details
Analysed
28-SEP-04
BX323576.9
finished
163069 DanioKeypilot        
  GAP (type-3) length unknown                  
102 CH211-159O22
ctg6644
zC159O22
EPN details
Analysed
28-AUG-03
AL929542.9
finished
80581 CHORI-211        
  GAP (type-3) length unknown                  
104 CH73-137D22
ctg6644_1
zH137D22
EPN details
Submitted to EMBL
22-SEP-08
CU062482.10
finished
122615 CHORI-73 3' / 5'
122615 / 2001
- / -
2000
0
Identified
2012-10-08
fetch_ncbi...
humpub
 
105 CH211-87F11
ctg6644_1
zC87F11
EPN details
Analysed
14-JUL-09
BX957349.7
finished
41277 CHORI-211        
  GAP (type-3) length unknown                  
107 CH73-364H19
ctg21_1
zH364H19
EPN details
Analysed
21-NOV-09
FP236334.12
finished
102400 CHORI-73        
  GAP (type-3) length unknown                  
109 CH211-182P21
ctg321_1
zC182P21
EPN details
Analysed
11-JAN-07
CT573439.9
finished
10223 CHORI-211        
  GAP (type-3) length unknown                  
111 DKEY-199M17
CTG321_2
zK199M17
EPN details
Analysed
14-JUN-07
CU179664.10
finished
70567 DanioKey 5' / 3'
2001 / 200690
- / -
2000
0
Identified
2013-11-14
fetch_ncbi...
humpub
 
112 CH211-196J10
CTG321_2
zC196J10
EPN details
Analysed
14-APR-07
CU179639.8
finished
200690 CHORI-211        
  GAP (type-3) length unknown                  
114 DKEYP-45C3
ctg252_1
zKp45C3
EPN details
Analysed
30-JAN-07
CT573435.8
finished
12704 DanioKeypilot        

Statistics

Clone Summary

Number of gaps
40
Gap types
type-3
40
Total clones
74
Clone HTGS Phases
finished
72
unfinished
1
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH211-191E5 (zC191E5)

Overlap Summary

Total overlap length of fin clones
50,007
Total finished length of fin clones w/ overlap
10,234,041
Total finished length of fin clones w/o overlap
10,184,034
Total overlap length of fin+unfin clones
50,007
Total finished length of fin+unfin clones w/ overlap
10,448,461
Total finished length of fin+unfin clones w/o overlap
10,398,454

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/fsemszwv