ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region H_2 (TPF updated: 2013-10-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-343G10
ctg1526
zH343G10
EPN details
FQ311914.3
unfinished
  GAP (type-3) length unknown    
3 DKEYP-20F6
ctg174
zKp20F6
EPN details
BX322607.6
finished
  GAP (type-3) length unknown    
5 DKEY-63I8
ctg4502
zK63I8
EPN details
BX649311.10
finished
  GAP (type-3) length unknown    
7 CH73-230E8
ctg5032
zH230E8
EPN details
FQ311898.1
unfinished
8 CH73-129A22
ctg5032
zH129A22
EPN details
FP016152.4
finished
  GAP (type-3) length unknown    
10 CH211-214F1
ctg5045
zC214F1
EPN details
CT027627.13
finished
  GAP (type-3) length unknown    
12 DKEY-4I23
ctg5050
zK4I23
EPN details
BX537326.9
finished
  GAP (type-3) length unknown    
14 DKEY-99O18
ctg6131
zK99O18
EPN details
BX666062.6
finished
15 DKEY-177B16
ctg6131
zK177B16
EPN details
BX649495.8
finished
16 DKEY-76N12
ctg6131
zK76N12
EPN details
BX677663.6
finished
17 CH211-223P14
ctg6131
zC223P14
EPN details
BX784036.6
finished
18 DKEY-15P13
ctg6131
zK15P13
EPN details
BX004978.10
finished
  GAP (type-3) length unknown    
20 CH211-194I14
ctg6147
zC194I14
EPN details
CU179700.9
finished
21 DKEY-120E17
ctg6147
zK120E17
EPN details
CR854826.15
finished
  GAP (type-3) length unknown    
23 DKEY-105A17
ctg6228
zK105A17
EPN details
BX548005.11
finished
  GAP (type-3) length unknown    
25 DKEYP-64A3
ctg6255
zKp64A3
EPN details
CR392032.9
finished
  GAP (type-3) length unknown    
27 CH211-281O21
ctg6326
zC281O21
EPN details
AL935282.14
finished
  GAP (type-3) length unknown    
29 DKEY-240P9
ctg6391
zK240P9
EPN details
BX539338.4
finished
30 CH211-209D21
ctg6391
zC209D21
EPN details
BX324001.6
finished
31 CH211-191G24
ctg6391
zC191G24
EPN details
BX465202.4
finished
32 DKEYP-26H9
ctg6391
zKp26H9
EPN details
BX677670.5
finished
33 RP71-1G18
ctg6391
bZ1G18
EPN details
AL627248.7
finished
34 DKEY-176A22
ctg6391
zK176A22
EPN details
BX649316.9
finished
35 DKEY-24H19
ctg6391
zK24H19
EPN details
BX649636.8
finished
  GAP (type-3) length unknown    
37 DKEYP-16G7
ctg6408
zKp16G7
EPN details
BX294123.12
finished
38 DKEY-1M1
ctg6408
zK1M1
EPN details
BX511156.5
finished
39 CH211-249E14
ctg6408
zC249E14
EPN details
BX322593.12
finished
  GAP (type-3) length unknown    
41 CH211-224J19
ctg6456
zC224J19
EPN details
BX284691.5
finished
42 DKEY-49L7
ctg6456
zK49L7
EPN details
BX005354.11
finished
  GAP (type-3) length unknown    
44 CH211-119H23
ctg6458
zC119H23
EPN details
BX005444.14
finished
  GAP (type-3) length unknown    
46 CH211-93J11
ctg6533
zC93J11
EPN details
CR356234.11
finished
  GAP (type-3) length unknown    
48 CH211-278J9
ctg6534
zC278J9
EPN details
AL954641.12
finished
  GAP (type-3) length unknown    
50 CH211-193C7
ctg6535
zC193C7
EPN details
AL929116.4
finished
51 CH211-252B2
ctg6535
zC252B2
EPN details
AL935192.10
finished
  GAP (type-3) length unknown    
53 DKEY-63D22
ctg6536
zK63D22
EPN details
BX005264.10
finished
  GAP (type-3) length unknown    
55 CH211-6M6
ctg6574
zC6M6
EPN details
AL954820.11
finished
  GAP (type-3) length unknown    
57 DKEYP-32C3
ctg6673
zKp32C3
EPN details
BX296527.6
finished
  GAP (type-3) length unknown    
59 DKEYP-30A5
ctg7235
zKp30A5
EPN details
CR376728.12
finished
60 CH211-220F6
ctg7235
zC220F6
EPN details
AL807739.6
finished
61 CH211-263O4
ctg7235
zC263O4
EPN details
BX537165.3
finished
  GAP (type-3) length unknown    
63 DKEY-220G3
ctg7235_1
zK220G3
EPN details
CT025582.12
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 100000 2 N 50000 contig no
100001 267493 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX322607.6 1 167493 +
267494 317493 4 N 50000 contig no
317494 545517 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 BX649311.10 1 228024 +
545518 595517 6 N 50000 contig no
595518 645517 7 N 50000 clone no
645518 760676 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 FP016152.4 1 115159 +
760677 810676 9 N 50000 contig no
810677 987904 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CT027627.13 1 177228 +
987905 1037904 11 N 50000 contig no
1037905 1275773 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 BX537326.9 1 237869 +
1275774 1325773 13 N 50000 contig no
1325774 1559261 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 18 BX666062.6 1 233488 +
1559262 1638966 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 18 BX649495.8 2001 81705 +
1638967 1778469 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 18 BX677663.6 2001 141503 +
1778470 1940516 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 18 BX784036.6 1 162047 +
1940517 2122760 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 18 BX004978.10 1 182244 -
2122761 2172760 19 N 50000 contig no
2172761 2382444 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 21 CU179700.9 1 209684 -
2382445 2548286 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 21 CR854826.15 1 165842 -
2548287 2598286 22 N 50000 contig no
2598287 2816522 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 BX548005.11 1 218236 +
2816523 2866522 24 N 50000 contig no
2866523 3058171 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CR392032.9 1 191649 +
3058172 3108171 26 N 50000 contig no
3108172 3281305 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 AL935282.14 1 173134 +
3281306 3331305 28 N 50000 contig no
3331306 3430993 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 BX539338.4 1 99688 +
3430994 3576677 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 BX324001.6 2001 147684 +
3576678 3745448 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 BX465202.4 2001 170771 +
3745449 3765271 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 BX677670.5 2001 21823 +
3765272 3906857 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 AL627248.7 2001 143586 +
3906858 3989538 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 BX649316.9 2001 84681 +
3989539 4009844 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 35 BX649636.8 2001 22306 +
4009845 4059844 36 N 50000 contig no
4059845 4228203 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 BX294123.12 1 168359 +
4228204 4384859 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 BX511156.5 1 156656 -
4384860 4389859 39 N 5000 No overlap in database    
4389860 4472196 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 BX322593.12 1 82337 +
4472197 4522196 41 N 50000 contig no
4522197 4696971 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 43 BX284691.5 1 174775 -
4696972 4844136 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 43 BX005354.11 2001 149165 +
4844137 4894136 44 N 50000 contig no
4894137 5063115 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 BX005444.14 1 168979 +
5063116 5113115 46 N 50000 contig no
5113116 5264682 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CR356234.11 1 151567 +
5264683 5314682 48 N 50000 contig no
5314683 5481822 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 AL954641.12 1 167140 +
5481823 5531822 50 N 50000 contig no
5531823 5657945 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 AL929116.4 1 126123 +
5657946 5849807 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 AL935192.10 1 191862 -
5849808 5899807 53 N 50000 contig no
5899808 6112412 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 BX005264.10 1 212605 +
6112413 6162412 55 N 50000 contig no
6162413 6351073 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 56 AL954820.11 1 188661 +
6351074 6401073 57 N 50000 contig no
6401074 6586779 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 BX296527.6 1 185706 +
6586780 6636779 59 N 50000 contig no
6636780 6745761 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 CR376728.12 1 108982 -
6745762 6846801 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 AL807739.6 1 101040 -
6846802 6951308 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 62 BX537165.3 53840 158346 +
6951309 7001308 63 N 50000 contig no
7001309 7165993 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 CT025582.12 1 164685 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-343G10
ctg1526
zH343G10
EPN details
Cancelled
12-JUL-11
FQ311914.3
unfinished
108360 CHORI-73        
  GAP (type-3) length unknown                  
3 DKEYP-20F6
ctg174
zKp20F6
EPN details
Analysed
16-MAR-04
BX322607.6
finished
167493 DanioKeypilot        
  GAP (type-3) length unknown                  
5 DKEY-63I8
ctg4502
zK63I8
EPN details
Analysed
06-AUG-04
BX649311.10
finished
228024 DanioKey        
  GAP (type-3) length unknown                  
7 CH73-230E8
ctg5032
zH230E8
EPN details
Cancelled
08-FEB-11
FQ311898.1
unfinished
121000 CHORI-73        
8 CH73-129A22
ctg5032
zH129A22
EPN details
Analysed
29-JAN-09
FP016152.4
finished
115159 CHORI-73        
  GAP (type-3) length unknown                  
10 CH211-214F1
ctg5045
zC214F1
EPN details
Submitted to EMBL
12-JAN-09
CT027627.13
finished
177228 CHORI-211        
  GAP (type-3) length unknown                  
12 DKEY-4I23
ctg5050
zK4I23
EPN details
Submitted to EMBL
12-JAN-09
BX537326.9
finished
237869 DanioKey        
  GAP (type-3) length unknown                  
14 DKEY-99O18
ctg6131
zK99O18
EPN details
Analysed
17-JUL-04
BX666062.6
finished
233488 DanioKey 3' / 5'
233488 / 2001
- / -
2000
0
Identified
2004-08-14
find_overl...
badger
 
15 DKEY-177B16
ctg6131
zK177B16
EPN details
Analysed
27-AUG-04
BX649495.8
finished
81705 DanioKey 3' / 5'
81705 / 2001
- / -
2000
0
Identified
2004-08-14
find_overl...
badger
 
16 DKEY-76N12
ctg6131
zK76N12
EPN details
Analysed
13-JUL-04
BX677663.6
finished
143503 DanioKey 3' / 5'
141503 / 1
- / -
2001
0.05
Identified
2004-05-30
find_overl...
badger
 
17 CH211-223P14
ctg6131
zC223P14
EPN details
Analysed
10-MAR-04
BX784036.6
finished
162047 CHORI-211 3' / 3'
162047 / 182244
- / -
2000
0
Identified
2004-03-11
find_overl...
gjc
 
18 DKEY-15P13
ctg6131
zK15P13
EPN details
Analysed
15-NOV-03
BX004978.10
finished
184244 DanioKey        
  GAP (type-3) length unknown                  
20 CH211-194I14
ctg6147
zC194I14
EPN details
Analysed
01-AUG-07
CU179700.9
finished
209684 CHORI-211 5' / 3'
1 / 165842
- / -
14136
0
Identified
2007-11-03
find_overl...
humpub
 
21 DKEY-120E17
ctg6147
zK120E17
EPN details
Analysed
06-JUN-06
CR854826.15
finished
179978 DanioKey        
  GAP (type-3) length unknown                  
23 DKEY-105A17
ctg6228
zK105A17
EPN details
Analysed
23-NOV-04
BX548005.11
finished
218236 DanioKey        
  GAP (type-3) length unknown                  
25 DKEYP-64A3
ctg6255
zKp64A3
EPN details
Analysed
16-MAR-05
CR392032.9
finished
191649 DanioKeypilot        
  GAP (type-3) length unknown                  
27 CH211-281O21
ctg6326
zC281O21
EPN details
Submitted to EMBL
05-JUN-07
AL935282.14
finished
173134 CHORI-211        
  GAP (type-3) length unknown                  
29 DKEY-240P9
ctg6391
zK240P9
EPN details
Analysed
17-MAR-04
BX539338.4
finished
99688 DanioKey 3' / 5'
99688 / 2001
- / -
2000
0
Identified
2004-03-19
find_overl...
badger
 
30 CH211-209D21
ctg6391
zC209D21
EPN details
Analysed
09-MAR-04
BX324001.6
finished
147684 CHORI-211 3' / 5'
147684 / 2001
- / -
2000
0
Identified
2004-03-05
find_overl...
badger
 
31 CH211-191G24
ctg6391
zC191G24
EPN details
Analysed
17-MAR-04
BX465202.4
finished
170771 CHORI-211 3' / 5'
170771 / 2001
- / -
2000
0
Identified
2004-05-13
find_overl...
badger
 
32 DKEYP-26H9
ctg6391
zKp26H9
EPN details
Analysed
25-MAY-04
BX677670.5
finished
21823 DanioKeypilot 3' / 5'
21823 / 2001
- / -
2000
0
Identified
2004-05-13
find_overl...
badger
 
33 RP71-1G18
ctg6391
bZ1G18
EPN details
Submitted to EMBL
12-JAN-09
AL627248.7
finished
143586 RPCI-71 3' / 5'
143586 / 2001
- / -
2000
0
Identified
2004-07-02
find_overl...
badger
 
34 DKEY-176A22
ctg6391
zK176A22
EPN details
Analysed
15-JUL-04
BX649316.9
finished
84681 DanioKey 3' / 5'
84681 / 2001
- / -
2000
0
Identified
2004-09-17
find_overl...
badger
 
35 DKEY-24H19
ctg6391
zK24H19
EPN details
Analysed
27-OCT-04
BX649636.8
finished
22306 DanioKey        
  GAP (type-3) length unknown                  
37 DKEYP-16G7
ctg6408
zKp16G7
EPN details
Analysed
06-JUN-04
BX294123.12
finished
168359 DanioKeypilot 3' / 3'
168359 / 156656
- / -
2000
0
Identified
2004-05-21
find_overl...
badger
 
38 DKEY-1M1
ctg6408
zK1M1
EPN details
Analysed
26-MAR-04
BX511156.5
finished
158656 DanioKey        
39 CH211-249E14
ctg6408
zC249E14
EPN details
Submitted to EMBL
05-JUN-07
BX322593.12
finished
82337 CHORI-211        
  GAP (type-3) length unknown                  
41 CH211-224J19
ctg6456
zC224J19
EPN details
Analysed
06-MAR-04
BX284691.5
finished
174775 CHORI-211 5' / 5'
1 / 2001
- / -
2000
0
Identified
2004-09-22
find_overl...
badger
 
42 DKEY-49L7
ctg6456
zK49L7
EPN details
Analysed
01-SEP-04
BX005354.11
finished
149165 DanioKey        
  GAP (type-3) length unknown                  
44 CH211-119H23
ctg6458
zC119H23
EPN details
Analysed
13-MAR-04
BX005444.14
finished
168979 CHORI-211        
  GAP (type-3) length unknown                  
46 CH211-93J11
ctg6533
zC93J11
EPN details
Analysed
10-MAY-06
CR356234.11
finished
151567 CHORI-211        
  GAP (type-3) length unknown                  
48 CH211-278J9
ctg6534
zC278J9
EPN details
Analysed
22-APR-04
AL954641.12
finished
167140 CHORI-211        
  GAP (type-3) length unknown                  
50 CH211-193C7
ctg6535
zC193C7
EPN details
Analysed
07-JAN-03
AL929116.4
finished
126123 CHORI-211 3' / 3'
126123 / 191862
- / -
787
0
Identified
2010-07-06
find_overl...
humpub
 
51 CH211-252B2
ctg6535
zC252B2
EPN details
Analysed
04-OCT-03
AL935192.10
finished
192649 CHORI-211        
  GAP (type-3) length unknown                  
53 DKEY-63D22
ctg6536
zK63D22
EPN details
Analysed
09-MAR-04
BX005264.10
finished
212605 DanioKey        
  GAP (type-3) length unknown                  
55 CH211-6M6
ctg6574
zC6M6
EPN details
Analysed
07-OCT-03
AL954820.11
finished
188661 CHORI-211        
  GAP (type-3) length unknown                  
57 DKEYP-32C3
ctg6673
zKp32C3
EPN details
Analysed
08-APR-04
BX296527.6
finished
185706 DanioKeypilot        
  GAP (type-3) length unknown                  
59 DKEYP-30A5
ctg7235
zKp30A5
EPN details
Analysed
15-JUL-05
CR376728.12
finished
108982 DanioKeypilot 5' / 3'
1 / 101040
- / -
91595
1.27
Identified
2010-07-06
find_overl...
humpub
 
60 CH211-220F6
ctg7235
zC220F6
EPN details
Submitted to EMBL
12-JAN-09
AL807739.6
finished
188716 CHORI-211 5' / 5'
1 / 53840
- / -
53905
0.32
Identified
2005-03-19
find_overl...
badger
 
61 CH211-263O4
ctg7235
zC263O4
EPN details
Analysed
28-FEB-04
BX537165.3
finished
158346 CHORI-211        
  GAP (type-3) length unknown                  
63 DKEY-220G3
ctg7235_1
zK220G3
EPN details
Analysed
05-MAY-06
CT025582.12
finished
164685 DanioKey        

Statistics

Clone Summary

Number of gaps
22
Gap types
type-3
22
Total clones
41
Clone HTGS Phases
finished
39
unfinished
2
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
184,424
Total finished length of fin clones w/ overlap
6,141,431
Total finished length of fin clones w/o overlap
5,957,007
Total overlap length of fin+unfin clones
184,424
Total finished length of fin+unfin clones w/ overlap
6,370,791
Total finished length of fin+unfin clones w/o overlap
6,186,367

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Other links

* quick link - http://q.sanger.ac.uk/ozsokqjh