ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_25 (TPF updated: 2008-02-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 IZAB-114C19
ctg2382
bY114C19
EPN details
BX571835.9
finished
2 IZAB-7A10
ctg2382
bY7A10
EPN details
BX571814.10
finished
3 IZAB-162M2
ctg2382
bY162M2
EPN details
AL954314.8
finished
  GAP (type-3) length unknown    
5 IZAB-12K13
ctg6629
bY12K13
EPN details
AL845537.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 32786 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX571835.9 1 32786 +
32787 37786 2 N 5000 No overlap in database    
37787 125345 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 BX571814.10 1 87559 +
125346 204639 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL954314.8 2001 81294 +
204640 254639 5 N 50000 contig no
254640 292618 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AL845537.6 1 37979 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 IZAB-114C19
ctg2382
bY114C19
EPN details
Analysed
08-APR-05
BX571835.9
finished
32786 Incyte-BAC        
2 IZAB-7A10
ctg2382
bY7A10
EPN details
Analysed
24-NOV-04
BX571814.10
finished
87559 Incyte-BAC 3' / 5'
87559 / 2001
- / -
2000
0
Identified
2008-11-12
find_overl...
humpub
 
3 IZAB-162M2
ctg2382
bY162M2
EPN details
Analysed
07-NOV-03
AL954314.8
finished
81294 Incyte-BAC        
  GAP (type-3) length unknown                  
5 IZAB-12K13
ctg6629
bY12K13
EPN details
Submitted to EMBL
12-JAN-09
AL845537.6
finished
37979 Incyte-BAC        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
239,618
Total finished length of fin clones w/o overlap
237,618
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
239,618
Total finished length of fin+unfin clones w/o overlap
237,618

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Other links

* quick link - http://q.sanger.ac.uk/w5jtaavr