ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_23 (TPF updated: 2006-03-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-182C22
ctg4312
dZ182C22
EPN details
BX255941.9
finished
  GAP (type-3) length unknown    
3 BUSM1-139E12
ctg4313
dZ139E12
EPN details
AL831758.22
finished
4 BUSM1-65I4
ctg4313
dZ65I4
EPN details
AL662878.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 107132 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX255941.9 1 107132 +
107133 157132 2 N 50000 contig no
157133 263655 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL831758.22 1 106523 +
263656 268655 4 N 5000 No overlap in database    
268656 320281 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL662878.2 1 51626 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-182C22
ctg4312
dZ182C22
EPN details
Analysed
06-MAY-04
BX255941.9
finished
107132 Amemiya        
  GAP (type-3) length unknown                  
3 BUSM1-139E12
ctg4313
dZ139E12
EPN details
Analysed
21-JAN-04
AL831758.22
finished
106523 Amemiya        
4 BUSM1-65I4
ctg4313
dZ65I4
EPN details
Submitted to EMBL
12-JAN-09
AL662878.2
finished
51626 Amemiya        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
265,281
Total finished length of fin clones w/o overlap
265,281
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
265,281
Total finished length of fin+unfin clones w/o overlap
265,281

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Other links

* quick link - http://q.sanger.ac.uk/rjvsz8aw