ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_20 (TPF updated: 2008-05-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-189A20
ctg4000
dZ189A20
EPN details
AL954305.14
finished
  GAP (type-3) length unknown    
3 BUSM1-261O22
ctg4001
dZ261O22
EPN details
AL591492.11
finished
  GAP (type-3) length unknown    
5 BUSM1-116L04
ctg4002
dZ116L04
EPN details
AL691516.5
finished
6 BUSM1-205D10
ctg4002
dZ205D10
EPN details
BX248242.5
finished
  GAP (type-3) length unknown    
8 BUSM1-140K9
ctg4003
dZ140K9
EPN details
BX001021.7
finished
  GAP (type-3) length unknown    
10 BUSM1-162F22
ctg4004
dZ162F22
EPN details
BX000487.7
finished
  GAP (type-3) length unknown    
12 BUSM1-SL10
ctg4005
dZSL10
EPN details
AL929324.15
finished
13 BUSM1-SL11
ctg4005
dZSL11
EPN details
AL929326.9
finished
  GAP (type-3) length unknown    
15 BUSM1-122B7
ctg4209
dZ122B7
EPN details
AL954673.5
finished
  GAP (type-3) length unknown    
17 BUSM1-84G17
ctg4271
dZ84G17
EPN details
AL954681.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 110369 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL954305.14 1 110369 +
110370 160369 2 N 50000 contig no
160370 252452 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL591492.11 1 92083 +
252453 302452 4 N 50000 contig no
302453 356160 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 AL691516.5 1 53708 +
356161 460939 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 BX248242.5 1 104779 +
460940 510939 7 N 50000 contig no
510940 621529 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 BX001021.7 1 110590 +
621530 671529 9 N 50000 contig no
671530 776553 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 BX000487.7 1 105024 +
776554 826553 11 N 50000 contig no
826554 943731 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 AL929324.15 1 117178 +
943732 948731 13 N 5000 No overlap in database    
948732 1086431 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 AL929326.9 1 137700 +
1086432 1136431 15 N 50000 contig no
1136432 1220734 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 AL954673.5 1 84303 +
1220735 1270734 17 N 50000 contig no
1270735 1356899 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 AL954681.6 1 86165 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-189A20
ctg4000
dZ189A20
EPN details
Submitted to EMBL
12-JAN-09
AL954305.14
finished
110369 Amemiya        
  GAP (type-3) length unknown                  
3 BUSM1-261O22
ctg4001
dZ261O22
EPN details
Submitted to EMBL
12-JAN-09
AL591492.11
finished
92083 Amemiya        
  GAP (type-3) length unknown                  
5 BUSM1-116L04
ctg4002
dZ116L04
EPN details
Submitted to EMBL
12-JAN-09
AL691516.5
finished
80250 Amemiya 3' / 5'
53708 / 1
- / -
27872
2.12
Identified
2010-07-06
find_overl...
humpub
 
6 BUSM1-205D10
ctg4002
dZ205D10
EPN details
Submitted to EMBL
12-JAN-09
BX248242.5
finished
104779 Amemiya        
  GAP (type-3) length unknown                  
8 BUSM1-140K9
ctg4003
dZ140K9
EPN details
Analysed
13-SEP-03
BX001021.7
finished
110590 Amemiya        
  GAP (type-3) length unknown                  
10 BUSM1-162F22
ctg4004
dZ162F22
EPN details
Analysed
10-OCT-03
BX000487.7
finished
105024 Amemiya        
  GAP (type-3) length unknown                  
12 BUSM1-SL10
ctg4005
dZSL10
EPN details
Analysed
24-JUN-04
AL929324.15
finished
117178 Amemiya        
13 BUSM1-SL11
ctg4005
dZSL11
EPN details
Analysed
13-JUN-03
AL929326.9
finished
137700 Amemiya        
  GAP (type-3) length unknown                  
15 BUSM1-122B7
ctg4209
dZ122B7
EPN details
Submitted to EMBL
12-JAN-09
AL954673.5
finished
84303 Amemiya        
  GAP (type-3) length unknown                  
17 BUSM1-84G17
ctg4271
dZ84G17
EPN details
Submitted to EMBL
12-JAN-09
AL954681.6
finished
86165 Amemiya        

Statistics

Clone Summary

Number of gaps
7
Gap types
type-3
7
Total clones
10
Clone HTGS Phases
finished
10
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
27,872
Total finished length of fin clones w/ overlap
1,028,441
Total finished length of fin clones w/o overlap
1,000,569
Total overlap length of fin+unfin clones
27,872
Total finished length of fin+unfin clones w/ overlap
1,028,441
Total finished length of fin+unfin clones w/o overlap
1,000,569

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Other links

* quick link - http://q.sanger.ac.uk/sk0kz7li