ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_19 (TPF updated: 2006-03-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-12F11
ctg4245
dZ12F11
EPN details
AL672176.10
finished
2 BUSM1-262K18
ctg4245
dZ262K18
EPN details
AL672164.13
finished
3 BUSM1-172P2
ctg4245
dZ172P2
EPN details
AL672185.7
finished
4 BUSM1-179B20
ctg4245
dZ179B20
EPN details
AL672151.8
finished
5 BUSM1-44O19
ctg4245
dZ44O19
EPN details
AL672216.10
finished
  GAP (type-3) length unknown    
7 BUSM1-46I22
ctg4256
dZ46I22
EPN details
AL731861.9
finished
  GAP (type-3) length unknown    
9 BUSM1-221D18
ctg4257
dZ221D18
EPN details
AL591170.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 100037 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL672176.10 1 100037 +
100038 163973 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL672164.13 2001 65936 +
163974 211670 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL672185.7 1 47697 +
211671 311747 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL672151.8 2001 102077 +
311748 316747 5 N 5000 No overlap in database    
316748 419451 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AL672216.10 1 102704 +
419452 469451 7 N 50000 contig no
469452 557113 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 AL731861.9 1 87662 +
557114 607113 9 N 50000 contig no
607114 707984 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 AL591170.5 1 100871 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-12F11
ctg4245
dZ12F11
EPN details
Submitted to EMBL
12-JAN-09
AL672176.10
finished
100037 Amemiya 3' / 5'
100037 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
2 BUSM1-262K18
ctg4245
dZ262K18
EPN details
Submitted to EMBL
12-JAN-09
AL672164.13
finished
68035 Amemiya 3' / 5'
65936 / 1
71 / -
2144
36.11
Identified
2011-03-15
find_overl...
humpub
 
3 BUSM1-172P2
ctg4245
dZ172P2
EPN details
Submitted to EMBL
12-JAN-09
AL672185.7
finished
47697 Amemiya 3' / 5'
47697 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
4 BUSM1-179B20
ctg4245
dZ179B20
EPN details
Submitted to EMBL
12-JAN-09
AL672151.8
finished
102077 Amemiya        
5 BUSM1-44O19
ctg4245
dZ44O19
EPN details
Submitted to EMBL
12-JAN-09
AL672216.10
finished
102704 Amemiya        
  GAP (type-3) length unknown                  
7 BUSM1-46I22
ctg4256
dZ46I22
EPN details
Submitted to EMBL
12-JAN-09
AL731861.9
finished
87662 Amemiya        
  GAP (type-3) length unknown                  
9 BUSM1-221D18
ctg4257
dZ221D18
EPN details
Submitted to EMBL
12-JAN-09
AL591170.5
finished
100871 Amemiya        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
6,144
Total finished length of fin clones w/ overlap
609,083
Total finished length of fin clones w/o overlap
602,939
Total overlap length of fin+unfin clones
6,144
Total finished length of fin+unfin clones w/ overlap
609,083
Total finished length of fin+unfin clones w/o overlap
602,939

Dovetails

# rank accession status length date
1 2 AL672164.13 unfinished 71 Fri, 19 Sep 2014 02:07

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/z7p0li60