ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_18 (TPF updated: 2006-03-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-202M12
ctg4367
dZ202M12
EPN details
AL672080.11
finished
2 BUSM1-172E19
ctg4367
dZ172E19
EPN details
AL713849.8
finished
3 BUSM1-241H12
ctg4367
dZ241H12
EPN details
AL592048.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 46517 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL672080.11 1 46517 +
46518 51517 2 N 5000 No overlap in database    
51518 70782 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL713849.8 1 19265 +
70783 171899 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 AL592048.5 1986 103102 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-202M12
ctg4367
dZ202M12
EPN details
Submitted to EMBL
12-JAN-09
AL672080.11
finished
46517 Amemiya        
2 BUSM1-172E19
ctg4367
dZ172E19
EPN details
Submitted to EMBL
12-JAN-09
AL713849.8
finished
19265 Amemiya 3' / 5'
19265 / 1986
- / -
2000
2.06
Identified
2010-07-06
find_overl...
humpub
 
3 BUSM1-241H12
ctg4367
dZ241H12
EPN details
Submitted to EMBL
12-JAN-09
AL592048.5
finished
103102 Amemiya        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
168,884
Total finished length of fin clones w/o overlap
166,884
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
168,884
Total finished length of fin+unfin clones w/o overlap
166,884

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Other links

* quick link - http://q.sanger.ac.uk/79pokkyh