ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_17 (TPF updated: 2010-03-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-181P14
ctg4058
dZ181P14
EPN details
AL592543.14
finished
2 BUSM1-265N10
ctg4058
dZ265N10
EPN details
AL672149.4
finished
3 BUSM1-107O16
ctg4058
dZ107O16
EPN details
AL596022.12
finished
  GAP (type-3) length unknown    
5 BUSM1-55K10
ctg4234
dZ55K10
EPN details
AL596064.3
finished
6 BUSM1-67D8
ctg4234
dZ67D8
EPN details
AL592306.11
finished
7 BUSM1-234G15
ctg4234
dZ234G15
EPN details
AL596026.13
finished
8 BUSM1-115O7
ctg4234
dZ115O7
EPN details
AL672087.6
finished
9 BUSM1-142B24
ctg4234
dZ142B24
EPN details
AL593845.5
finished
10 BUSM1-209D10
ctg4234
dZ209D10
EPN details
AL672044.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 99495 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL592543.14 1 99495 +
99496 113140 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL672149.4 2001 15645 +
113141 118140 3 N 5000 No overlap in database    
118141 240081 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL596022.12 1 121941 +
240082 290081 5 N 50000 contig no
290082 300351 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 11 AL596064.3 1 10270 +
300352 422765 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 11 AL592306.11 5 122418 +
422766 475989 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 11 AL596026.13 61275 114498 +
475990 490889 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 11 AL672087.6 1 14900 -
490890 576056 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 11 AL593845.5 1993 87159 +
576057 636704 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 11 AL672044.7 1 60648 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-181P14
ctg4058
dZ181P14
EPN details
Analysed
21-SEP-02
AL592543.14
finished
99495 Amemiya 3' / 5'
99495 / 2001
- / -
2000
0
Identified
2003-05-12
find_overl...
badger
 
2 BUSM1-265N10
ctg4058
dZ265N10
EPN details
Analysed
12-JUN-02
AL672149.4
finished
15645 Amemiya        
3 BUSM1-107O16
ctg4058
dZ107O16
EPN details
Analysed
25-APR-02
AL596022.12
finished
121941 Amemiya        
  GAP (type-3) length unknown                  
5 BUSM1-55K10
ctg4234
dZ55K10
EPN details
Submitted to EMBL
22-FEB-02
AL596064.3
finished
12264 Amemiya 3' / 5'
10270 / 5
- / 4
2105
2.16
Identified
2010-07-06
find_overl...
humpub
 
6 BUSM1-67D8
ctg4234
dZ67D8
EPN details
Analysed
21-JAN-03
AL592306.11
finished
122418 Amemiya 3' / 5'
122418 / 61275
- / -
61593
1.25
Identified
2010-07-06
find_overl...
humpub
 
7 BUSM1-234G15
ctg4234
dZ234G15
EPN details
Analysed
20-FEB-02
AL596026.13
finished
127993 Amemiya 3' / 3'
114498 / 14900
- / -
13499
0.03
Identified
2003-05-12
find_overl...
badger
 
8 BUSM1-115O7
ctg4234
dZ115O7
EPN details
Analysed
10-DEC-02
AL672087.6
finished
14900 Amemiya 5' / 5'
1 / 1993
- / -
2000
0.65
Identified
2010-07-06
find_overl...
humpub
 
9 BUSM1-142B24
ctg4234
dZ142B24
EPN details
Analysed
21-FEB-02
AL593845.5
finished
89159 Amemiya 3' / 3'
87159 / 60648
- / -
2000
0
Identified
2003-05-12
find_overl...
badger
 
10 BUSM1-209D10
ctg4234
dZ209D10
EPN details
Analysed
16-JAN-03
AL672044.7
finished
60648 Amemiya        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
83,197
Total finished length of fin clones w/ overlap
664,463
Total finished length of fin clones w/o overlap
581,266
Total overlap length of fin+unfin clones
83,197
Total finished length of fin+unfin clones w/ overlap
664,463
Total finished length of fin+unfin clones w/o overlap
581,266

Dovetails

# rank accession status length date
1 6 AL592306.11 unfinished 4 Tue, 29 Jul 2014 03:40

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