ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_15 (TPF updated: 2013-10-07)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-175P5
ctg4212
dZ175P5
EPN details
AL606705.23
finished
2 BUSM1-71J22
ctg4212
dZ71J22
EPN details
AL606809.8
finished
3 BUSM1-172K9
ctg4212
dZ172K9
EPN details
AL606702.7
finished
  GAP (type-3) length unknown    
5 BUSM1-181A10
ctg4196
dZ181A10
EPN details
AL606703.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 92464 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL606705.23 1 92464 +
92465 97464 2 N 5000 No overlap in database    
97465 170724 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL606809.8 1 73260 +
170725 175724 4 N 5000 No overlap in database    
175725 278460 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL606702.7 1 102736 +
278461 328460 6 N 50000 contig no
328461 404725 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AL606703.6 1 76265 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-175P5
ctg4212
dZ175P5
EPN details
Submitted to EMBL
12-JAN-09
AL606705.23
finished
92464 Amemiya        
2 BUSM1-71J22
ctg4212
dZ71J22
EPN details
Submitted to EMBL
12-JAN-09
AL606809.8
finished
73260 Amemiya        
3 BUSM1-172K9
ctg4212
dZ172K9
EPN details
Submitted to EMBL
12-JAN-09
AL606702.7
finished
102736 Amemiya        
  GAP (type-3) length unknown                  
5 BUSM1-181A10
ctg4196
dZ181A10
EPN details
Submitted to EMBL
12-JAN-09
AL606703.6
finished
76265 Amemiya        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
344,725
Total finished length of fin clones w/o overlap
344,725
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
344,725
Total finished length of fin+unfin clones w/o overlap
344,725

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Other links

* quick link - http://q.sanger.ac.uk/bnlmn8ok