ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_13 (TPF updated: 2010-11-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 KTRZ
ctg1295
Cl/Pr KTRZ/PACKTRZ swap
EPN details
AL627094.2
finished
2 KT119
ctg1295
Cl/Pr KT119/PACKT119 swap
EPN details
AL627162.4
finished
  GAP (type-3) length unknown    
4 1CSE
ctg2553
Cl/Pr 1CSE/BAC1CSE swap
EPN details
AL592289.22
finished
5 DZ239J31
ctg2553
Cl/Pr DZ239J31/PAC13CSE swap
EPN details
AL592204.7
finished
6 7CSE
ctg2553
Cl/Pr 7CSE/BAC7CSE swap
EPN details
AL645689.11
finished
7 6CSE
ctg2553
Cl/Pr 6CSE/BAC6CSE swap
EPN details
AL592062.11
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 49116 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL627094.2 1 49116 +
49117 54116 2 N 5000 No overlap in database    
54117 83371 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL627162.4 1 29255 +
83372 133371 4 N 50000 contig no
133372 218678 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL592289.22 1 85307 +
218679 223678 6 N 5000 No overlap in database    
223679 256687 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AL592204.7 1 33009 +
256688 261687 8 N 5000 No overlap in database    
261688 344535 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AL645689.11 1 82848 -
344536 397715 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 AL592062.11 1 53180 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 KTRZ
ctg1295
Cl/Pr KTRZ/PACKTRZ swap
EPN details
Submitted to EMBL
12-JAN-09
AL627094.2
finished
49116 -        
2 KT119
ctg1295
Cl/Pr KT119/PACKT119 swap
EPN details
Submitted to EMBL
12-JAN-09
AL627162.4
finished
29255 -        
  GAP (type-3) length unknown                  
4 1CSE
ctg2553
Cl/Pr 1CSE/BAC1CSE swap
EPN details
Submitted to EMBL
04-MAY-06
AL592289.22
finished
85307 -        
5 DZ239J31
ctg2553
Cl/Pr DZ239J31/PAC13CSE swap
EPN details
Analysed
16-JAN-04
AL592204.7
finished
33009 -        
6 7CSE
ctg2553
Cl/Pr 7CSE/BAC7CSE swap
EPN details
Submitted to EMBL
04-MAY-06
AL645689.11
finished
82848 - 5' / 3'
1 / 53180
- / -
53613
0.27
Identified
2008-09-06
find_overl...
humpub
 
7 6CSE
ctg2553
Cl/Pr 6CSE/BAC6CSE swap
EPN details
Submitted to EMBL
04-MAY-06
AL592062.11
finished
106778 -        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
53,613
Total finished length of fin clones w/ overlap
386,313
Total finished length of fin clones w/o overlap
332,700
Total overlap length of fin+unfin clones
53,613
Total finished length of fin+unfin clones w/ overlap
386,313
Total finished length of fin+unfin clones w/o overlap
332,700

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/t44l2mtm