ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_11 (TPF updated: 2008-05-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-223C6
ctg4031
dZ223C6
EPN details
AL714030.6
finished
2 BUSM1-136D19
ctg4031
dZ136D19
EPN details
AL713850.6
finished
  GAP (type-3) length unknown    
4 BUSM1-6A2
ctg4156
dZ6A2
EPN details
AL672211.7
finished
5 BUSM1-1I3
ctg4156
dZ1I3
EPN details
AL672161.18
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 47101 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL714030.6 43247 90347 -
47102 146782 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL713850.6 1 99681 -
146783 196782 3 N 50000 contig no
196783 275634 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL672211.7 1 78852 +
275635 359536 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL672161.18 1 83902 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-223C6
ctg4031
dZ223C6
EPN details
Submitted to EMBL
12-JAN-09
AL714030.6
finished
90347 Amemiya 5' / 3'
43247 / 99681
- / -
44805
1.91
Identified
2010-07-06
find_overl...
humpub
 
2 BUSM1-136D19
ctg4031
dZ136D19
EPN details
Submitted to EMBL
12-JAN-09
AL713850.6
finished
99681 Amemiya        
  GAP (type-3) length unknown                  
4 BUSM1-6A2
ctg4156
dZ6A2
EPN details
Submitted to EMBL
12-JAN-09
AL672211.7
finished
80828 Amemiya 3' / 5'
78852 / 1
- / -
2000
1.62
Identified
2010-07-06
find_overl...
humpub
 
5 BUSM1-1I3
ctg4156
dZ1I3
EPN details
Submitted to EMBL
12-JAN-09
AL672161.18
finished
83902 Amemiya        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
46,805
Total finished length of fin clones w/ overlap
354,758
Total finished length of fin clones w/o overlap
307,953
Total overlap length of fin+unfin clones
46,805
Total finished length of fin+unfin clones w/ overlap
354,758
Total finished length of fin+unfin clones w/o overlap
307,953

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