ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_11 (TPF updated: 2008-05-01)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-223C6
ctg4031
dZ223C6
AL714030.6
finished
2 BUSM1-136D19
ctg4031
dZ136D19
AL713850.6
finished
  GAP (type-3) length unknown    
4 BUSM1-6A2
ctg4156
dZ6A2
AL672211.7
finished
5 BUSM1-1I3
ctg4156
dZ1I3
AL672161.18
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 47101 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL714030.6 43247 90347 -
47102 146782 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL713850.6 1 99681 -
146783 196782 3 N 50000 contig no
196783 275634 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL672211.7 1 78852 +
275635 359536 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AL672161.18 1 83902 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
46,805
Total finished length of fin clones w/ overlap
354,758
Total finished length of fin clones w/o overlap
307,953
Total overlap length of fin+unfin clones
46,805
Total finished length of fin+unfin clones w/ overlap
354,758
Total finished length of fin+unfin clones w/o overlap
307,953

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Other links

* quick link - http://q.sanger.ac.uk/vbw5bqgf