ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_9 (TPF updated: 2008-05-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 IZAB-134G18
ctg3000
bY134G18
EPN details
AL672166.8
finished
2 IZAB-68F21
ctg3000
bY68F21
EPN details
AL593852.6
finished
  GAP (type-3) length unknown    
4 BUSM1-201C3
ctg4135
dZ201C3
EPN details
AL713996.11
finished
  GAP (type-3) length unknown    
6 BUSM1-37O5
ctg4136
dZ37O5
EPN details
AL672097.5
finished
7 BUSM1-104F18
ctg4136
dZ104F18
EPN details
AL672129.4
finished
  GAP (type-3) length unknown    
9 BUSM1-21A14
ctg4141
dZ21A14
EPN details
AL732436.6
finished
10 BUSM1-145B16
ctg4141
dZ145B16
EPN details
AL713987.7
finished
11 BUSM1-42H5
ctg4141
dZ42H5
EPN details
AL732458.5
finished
12 BUSM1-106A20
ctg4141
dZ106A20
EPN details
AL732415.9
finished
13 BUSM1-258D18
ctg4141
dZ258D18
EPN details
AL772356.2
finished
14 BUSM1-249N21
ctg4141
dZ249N21
EPN details
AL732421.9
finished
15 BUSM1-167C3
ctg4141
dZ167C3
EPN details
AL714003.6
finished
16 BUSM1-44F8
ctg4141
dZ44F8
EPN details
AL732481.4
finished
  GAP (type-3) length unknown    
18 BUSM1-71F1
ctg4142
dZ71F1
EPN details
BX248311.6
finished
  GAP (type-3) length unknown    
20 BUSM1-221H11
ctg4143
dZ221H11
EPN details
AL732424.10
finished
21 BUSM1-13F19
ctg4143
dZ13F19
EPN details
AL714005.17
finished
22 BUSM1-12G7
ctg4143
dZ12G7
EPN details
AL731859.12
finished
23 BUSM1-256P4
ctg4143
dZ256P4
EPN details
AL731656.5
finished
24 BUSM1-60J23
ctg4143
dZ60J23
EPN details
AL714031.7
finished
25 BUSM1-57I23
ctg4143
dZ57I23
EPN details
AL731850.7
finished
  GAP (type-3) length unknown    
27 IZAB-51I9
ctg6544
bY51I9
EPN details
AL732411.14
finished
28 IZAB-143E18
ctg6544
bY143E18
EPN details
AL731564.5
finished
29 IZAB-35D8
ctg6544
bY35D8
EPN details
AL732386.13
finished
30 IZAB-36G15
ctg6544
bY36G15
EPN details
AL732398.9
finished
  GAP (type-3) length unknown    
32 IZAB-102M24
ctg6545
bY102M24
EPN details
AL672197.12
finished
33 IZAB-85C7
ctg6545
bY85C7
EPN details
AL592562.18
finished
34 IZAB-51F19
ctg6545
bY51F19
EPN details
AL596027.11
finished
  GAP (type-3) length unknown    
36 IZAB-158F24
ctg6552
bY158F24
EPN details
AL713959.16
finished
37 IZAB-173D22
ctg6552
bY173D22
EPN details
AL645826.9
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 74692 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL672166.8 1 74692 +
74693 77023 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL593852.6 1 2331 -
77024 127023 3 N 50000 contig no
127024 185060 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL713996.11 1 58037 +
185061 235060 5 N 50000 contig no
235061 335441 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL672097.5 1 100381 -
335442 427799 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL672129.4 1 92358 -
427800 477799 8 N 50000 contig no
477800 601761 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AL732436.6 1 123962 +
601762 606761 10 N 5000 No overlap in database    
606762 720645 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AL713987.7 8 113891 -
720646 800519 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AL732458.5 4951 84824 +
800520 805519 13 N 5000 No overlap in database    
805520 917979 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 AL732415.9 1 112460 +
917980 922979 15 N 5000 No overlap in database    
922980 1001161 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 AL772356.2 1 78182 +
1001162 1091964 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 AL732421.9 1 90803 +
1091965 1226149 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 AL714003.6 2001 136185 +
1226150 1231149 19 N 5000 No overlap in database    
1231150 1345494 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AL732481.4 1 114345 +
1345495 1395494 21 N 50000 contig no
1395495 1539087 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 BX248311.6 1 143593 +
1539088 1589087 23 N 50000 contig no
1589088 1643392 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AL732424.10 1 54305 +
1643393 1648392 25 N 5000 No overlap in database    
1648393 1753221 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 AL714005.17 1 104829 +
1753222 1758221 27 N 5000 No overlap in database    
1758222 1893273 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 AL731859.12 1 135052 +
1893274 1898273 29 N 5000 No overlap in database    
1898274 1966440 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AL731656.5 1 68167 +
1966441 1971440 31 N 5000 No overlap in database    
1971441 2081160 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AL714031.7 1 109720 +
2081161 2086160 33 N 5000 No overlap in database    
2086161 2144141 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 AL731850.7 1 57981 +
2144142 2194141 35 N 50000 contig no
2194142 2258940 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 36 AL732411.14 1 64799 +
2258941 2263940 37 N 5000 No overlap in database    
2263941 2302541 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 AL731564.5 1 38601 +
2302542 2311730 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 AL732386.13 2001 11189 +
2311731 2372553 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 40 AL732398.9 1 60823 +
2372554 2422553 41 N 50000 contig no
2422554 2431709 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 AL672197.12 1 9156 +
2431710 2499625 43 F AL592562.18
Double 5-prime join to 'AL592562.18'
26214 94129 -
2499626 2504625 44 N 5000 Bad overlap - double 5 prime join    
2504626 2576846 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 AL596027.11 1 72221 +
2576847 2626846 46 N 50000 contig no
2626847 2651051 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 48 AL713959.16 1 24205 +
2651052 2740000 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 48 AL645826.9 1 88949 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 IZAB-134G18
ctg3000
bY134G18
EPN details
Submitted to EMBL
04-MAY-06
AL672166.8
finished
74692 Incyte-BAC 3' / 3'
74692 / 2331
- / -
2000
0
Identified
2008-11-12
find_overl...
humpub
 
2 IZAB-68F21
ctg3000
bY68F21
EPN details
Submitted to EMBL
04-MAY-06
AL593852.6
finished
4331 Incyte-BAC        
  GAP (type-3) length unknown                  
4 BUSM1-201C3
ctg4135
dZ201C3
EPN details
Submitted to EMBL
12-JAN-09
AL713996.11
finished
58037 Amemiya        
  GAP (type-3) length unknown                  
6 BUSM1-37O5
ctg4136
dZ37O5
EPN details
Submitted to EMBL
12-JAN-09
AL672097.5
finished
100381 Amemiya 5' / 3'
1 / 92358
- / -
1175
0
Identified
2010-07-06
find_overl...
humpub
 
7 BUSM1-104F18
ctg4136
dZ104F18
EPN details
Submitted to EMBL
12-JAN-09
AL672129.4
finished
93533 Amemiya        
  GAP (type-3) length unknown                  
9 BUSM1-21A14
ctg4141
dZ21A14
EPN details
Submitted to EMBL
12-JAN-09
AL732436.6
finished
123962 Amemiya        
10 BUSM1-145B16
ctg4141
dZ145B16
EPN details
Submitted to EMBL
12-JAN-09
AL713987.7
finished
113891 Amemiya 5' / 5'
8 / 4951
7 / -
4952
1.51
Identified
2010-07-06
find_overl...
humpub
 
11 BUSM1-42H5
ctg4141
dZ42H5
EPN details
Submitted to EMBL
12-JAN-09
AL732458.5
finished
84824 Amemiya        
12 BUSM1-106A20
ctg4141
dZ106A20
EPN details
Submitted to EMBL
12-JAN-09
AL732415.9
finished
112460 Amemiya        
13 BUSM1-258D18
ctg4141
dZ258D18
EPN details
Submitted to EMBL
12-JAN-09
AL772356.2
finished
80182 Amemiya 3' / 5'
78182 / 1
- / -
2002
0.2
Identified
2003-10-21
find_overl...
badger
 
14 BUSM1-249N21
ctg4141
dZ249N21
EPN details
Submitted to EMBL
12-JAN-09
AL732421.9
finished
90803 Amemiya 3' / 5'
90803 / 2001
- / -
2000
0
Identified
2003-10-21
find_overl...
badger
 
15 BUSM1-167C3
ctg4141
dZ167C3
EPN details
Submitted to EMBL
12-JAN-09
AL714003.6
finished
136185 Amemiya        
16 BUSM1-44F8
ctg4141
dZ44F8
EPN details
Submitted to EMBL
12-JAN-09
AL732481.4
finished
114345 Amemiya        
  GAP (type-3) length unknown                  
18 BUSM1-71F1
ctg4142
dZ71F1
EPN details
Analysed
25-DEC-03
BX248311.6
finished
143593 Amemiya        
  GAP (type-3) length unknown                  
20 BUSM1-221H11
ctg4143
dZ221H11
EPN details
Submitted to EMBL
12-JAN-09
AL732424.10
finished
54305 Amemiya        
21 BUSM1-13F19
ctg4143
dZ13F19
EPN details
Submitted to EMBL
12-JAN-09
AL714005.17
finished
104829 Amemiya        
22 BUSM1-12G7
ctg4143
dZ12G7
EPN details
Submitted to EMBL
12-JAN-09
AL731859.12
finished
135052 Amemiya        
23 BUSM1-256P4
ctg4143
dZ256P4
EPN details
Submitted to EMBL
12-JAN-09
AL731656.5
finished
68167 Amemiya        
24 BUSM1-60J23
ctg4143
dZ60J23
EPN details
Submitted to EMBL
12-JAN-09
AL714031.7
finished
109720 Amemiya        
25 BUSM1-57I23
ctg4143
dZ57I23
EPN details
Submitted to EMBL
12-JAN-09
AL731850.7
finished
57981 Amemiya        
  GAP (type-3) length unknown                  
27 IZAB-51I9
ctg6544
bY51I9
EPN details
Submitted to EMBL
12-JAN-09
AL732411.14
finished
64799 Incyte-BAC        
28 IZAB-143E18
ctg6544
bY143E18
EPN details
Submitted to EMBL
12-JAN-09
AL731564.5
finished
38601 Incyte-BAC 3' / 5'
38601 / 2001
- / -
2530
5.84
Identified
2010-07-06
find_overl...
humpub
 
29 IZAB-35D8
ctg6544
bY35D8
EPN details
Submitted to EMBL
12-JAN-09
AL732386.13
finished
50895 Incyte-BAC 3' / 5'
11189 / 1
- / -
45193
2.72
Identified
2010-07-06
find_overl...
humpub
 
30 IZAB-36G15
ctg6544
bY36G15
EPN details
Submitted to EMBL
12-JAN-09
AL732398.9
finished
60823 Incyte-BAC        
  GAP (type-3) length unknown                  
32 IZAB-102M24
ctg6545
bY102M24
EPN details
Submitted to EMBL
12-JAN-09
AL672197.12
finished
9156 Incyte-BAC 3' / 5'
9156 / 2001
- / -
2000
0
Identified
2008-11-12
find_overl...
humpub
 
33 IZAB-85C7
ctg6545
bY85C7
EPN details
Analysed
25-JUN-04
AL592562.18
finished
94129 Incyte-BAC 5' / 5'
26214 / 1
- / -
31317
2.15
Identified
2010-07-06
find_overl...
humpub
 
34 IZAB-51F19
ctg6545
bY51F19
EPN details
Submitted to EMBL
12-JAN-09
AL596027.11
finished
72221 Incyte-BAC        
  GAP (type-3) length unknown                  
36 IZAB-158F24
ctg6552
bY158F24
EPN details
Analysed
25-MAY-03
AL713959.16
finished
26205 Incyte-BAC 3' / 3'
24205 / 88949
- / -
2001
0.05
Identified
2008-11-12
find_overl...
humpub
 
37 IZAB-173D22
ctg6552
bY173D22
EPN details
Submitted to EMBL
12-JAN-09
AL645826.9
finished
88949 Incyte-BAC        

Statistics

Clone Summary

Number of gaps
8
Gap types
type-3
8
Total clones
29
Clone HTGS Phases
finished
29
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
95,170
Total finished length of fin clones w/ overlap
2,367,051
Total finished length of fin clones w/o overlap
2,271,881
Total overlap length of fin+unfin clones
95,170
Total finished length of fin+unfin clones w/ overlap
2,367,051
Total finished length of fin+unfin clones w/o overlap
2,271,881

AGP errors

# rank accession seq_start seq_end strand error date
1 44 AL592562.18 26,214 94,129 -1 Double 5-prime join to 'AL592562.18' Fri, 21 Nov 2014 02:23

Dovetails

# rank accession status length date
1 10 AL713987.7 unfinished 7 Fri, 21 Nov 2014 02:23

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Other links

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