ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_8 (TPF updated: 2009-09-17)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-194E12
ctg4120
dZ194E12
EPN details
AL591210.6
finished
2 BUSM1-160C18
ctg4120
dZ160C18
EPN details
AL591176.8
finished
3 BUSM1-104N07
ctg4120
dZ104N07
EPN details
AL591144.6
finished
4 BUSM1-266F07
ctg4120
dZ266F07
EPN details
AL672158.4
finished
  GAP (type-3) length unknown    
6 BUSM1-73H06
ctg4123
dZ73H06
EPN details
AL591494.11
finished
7 BUSM1-228J01
ctg4123
dZ228J01
EPN details
AL591442.2
finished
8 BUSM1-37I06
ctg4123
dZ37I06
EPN details
AL591175.6
finished
9 BUSM1-243A08
ctg4123
dZ243A08
EPN details
AL591180.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 118527 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL591210.6 1 118527 -
118528 186036 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL591176.8 1 67509 -
186037 191036 3 N 5000 No overlap in database    
191037 302470 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL591144.6 1 111434 +
302471 307470 5 N 5000 No overlap in database    
307471 389658 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AL672158.4 1 82188 +
389659 439658 7 N 50000 contig no
439659 460657 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 AL591494.11 1 20999 -
460658 558586 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 AL591442.2 1 97929 -
558587 563586 10 N 5000 No overlap in database    
563587 652818 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AL591175.6 1 89232 +
652819 697614 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AL591180.4 35477 80272 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-194E12
ctg4120
dZ194E12
EPN details
Submitted to EMBL
12-JAN-09
AL591210.6
finished
118527 Amemiya 5' / 3'
1 / 67509
- / -
32878
0.02
Identified
2003-07-03
find_overl...
badger
 
2 BUSM1-160C18
ctg4120
dZ160C18
EPN details
Submitted to EMBL
12-JAN-09
AL591176.8
finished
100379 Amemiya        
3 BUSM1-104N07
ctg4120
dZ104N07
EPN details
Submitted to EMBL
12-JAN-09
AL591144.6
finished
111434 Amemiya        
4 BUSM1-266F07
ctg4120
dZ266F07
EPN details
Submitted to EMBL
12-JAN-09
AL672158.4
finished
82188 Amemiya        
  GAP (type-3) length unknown                  
6 BUSM1-73H06
ctg4123
dZ73H06
EPN details
Analysed
09-APR-11
AL591494.11
finished
20999 Amemiya 5' / 3'
1 / 97929
- / -
2000
0.0499999999999998
Identified
2010-07-06
find_overl...
humpub
 
7 BUSM1-228J01
ctg4123
dZ228J01
EPN details
Submitted to EMBL
12-JAN-09
AL591442.2
finished
99866 Amemiya        
8 BUSM1-37I06
ctg4123
dZ37I06
EPN details
Submitted to EMBL
12-JAN-09
AL591175.6
finished
89232 Amemiya 3' / 5'
89232 / 35477
- / -
35564
0.28
Identified
2003-07-03
find_overl...
badger
 
9 BUSM1-243A08
ctg4123
dZ243A08
EPN details
Submitted to EMBL
12-JAN-09
AL591180.4
finished
80272 Amemiya        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
8
Clone HTGS Phases
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
70,442
Total finished length of fin clones w/ overlap
702,897
Total finished length of fin clones w/o overlap
632,455
Total overlap length of fin+unfin clones
70,442
Total finished length of fin+unfin clones w/ overlap
702,897
Total finished length of fin+unfin clones w/o overlap
632,455

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Other links

* quick link - http://q.sanger.ac.uk/n28sw1rb