ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_7 (TPF updated: 2010-11-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-213M14
ctg4094
dZ213M14
EPN details
AL591406.6
finished
2 BUSM1-186F8
ctg4094
dZ186F8
EPN details
AL591391.5
finished
3 BUSM1-175P12
ctg4094
dZ175P12
EPN details
AL591401.5
finished
4 BUSM1-178A3
ctg4094
dZ178A3
EPN details
AL591372.3
finished
5 BUSM1-219H16
ctg4094
dZ219H16
EPN details
AL591427.2
finished
6 BUSM1-132M23
ctg4094
dZ132M23
EPN details
AL845510.8
finished
7 BUSM1-169I8
ctg4094
dZ169I8
EPN details
AL844870.6
finished
8 BUSM1-173M20
ctg4094
dZ173M20
EPN details
AL591497.2
finished
9 BUSM1-139E19
ctg4094
dZ139E19
EPN details
AL591418.11
finished
10 BUSM1-105L16
ctg4094
dZ105L16
EPN details
AL591382.3
finished
11 BUSM1-125J23
ctg4094
dZ125J23
EPN details
AL591405.3
finished
12 BUSM1-150L22
ctg4094
dZ150L22
EPN details
AL592105.14
finished
13 BUSM1-6I1
ctg4094
dZ6I1
EPN details
AL732544.12
finished
  GAP (type-3) length unknown    
15 BUSM1-199M19
ctg4099
dZ199M19
EPN details
AL596024.5
finished
16 BUSM1-221H6
ctg4099
dZ221H6
EPN details
AL591420.5
finished
17 BUSM1-116C14
ctg4099
dZ116C14
EPN details
AL591482.3
finished
18 BUSM1-167D6
ctg4099
dZ167D6
EPN details
AL929296.11
finished
19 BUSM1-143H6
ctg4099
dZ143H6
EPN details
BX004831.16
finished
  GAP (type-3) length unknown    
21 BUSM1-241N23
ctg4101
dZ241N23
EPN details
BX294001.10
finished
  GAP (type-3) length unknown    
23 BUSM1-70B1
ctg4111
dZ70B1
EPN details
AL928677.6
finished
24 BUSM1-112P11
ctg4111
dZ112P11
EPN details
AL929198.3
finished
25 BUSM1-56J1
ctg4111
dZ56J1
EPN details
AL845549.9
finished
26 BUSM1-221I3
ctg4111
dZ221I3
EPN details
AL845545.5
finished
27 BUSM1-180O5
ctg4111
dZ180O5
EPN details
AL929461.3
finished
28 BUSM1-71B9
ctg4111
dZ71B9
EPN details
AL929295.7
finished
29 BUSM1-148B8
ctg4111
dZ148B8
EPN details
AL928878.10
finished
30 BUSM1-138C24
ctg4111
dZ138C24
EPN details
AL954332.7
finished
31 BUSM1-133F4
ctg4111
dZ133F4
EPN details
AL845544.11
finished
32 BUSM1-44F21
ctg4111
dZ44F21
EPN details
AL929329.2
finished
  GAP (type-3) length unknown    
34 KT90
ctg4370
Cl/Pr KT90/PACKT90 swap
EPN details
AL627163.3
finished
35 KT73
ctg4370
Cl/Pr KT73/PACKT73 swap
EPN details
AL627170.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 63872 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL591406.6 1 63872 +
63873 121996 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL591391.5 1 58124 +
121997 206064 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL591401.5 1 84068 +
206065 236997 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL591372.3 2001 32933 +
236998 241997 5 N 5000 No overlap in database    
241998 368199 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 AL591427.2 1 126202 +
368200 373199 7 N 5000 No overlap in database    
373200 474440 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 AL845510.8 1 101241 +
474441 479440 9 N 5000 No overlap in database    
479441 611943 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AL844870.6 1 132503 -
611944 665356 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AL591497.2 1 53413 -
665357 670356 12 N 5000 No overlap in database    
670357 782381 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AL591418.11 1 112025 +
782382 787381 14 N 5000 No overlap in database    
787382 886315 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AL591382.3 1 98934 +
886316 891315 16 N 5000 No overlap in database    
891316 933093 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 AL591405.3 38217 79994 -
933094 1039116 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 18 AL592105.14 1 106023 -
1039117 1044116 19 N 5000 No overlap in database    
1044117 1179257 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AL732544.12 1 135141 +
1179258 1229257 21 N 50000 contig no
1229258 1281074 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 AL596024.5 1 51817 +
1281075 1286074 23 N 5000 No overlap in database    
1286075 1333116 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 AL591420.5 3978 51019 -
1333117 1428480 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 AL591482.3 1 95364 +
1428481 1433480 26 N 5000 No overlap in database    
1433481 1488177 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 AL929296.11 1 54697 +
1488178 1551175 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX004831.16 56159 119156 +
1551176 1601175 29 N 50000 contig no
1601176 1615130 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 BX294001.10 1 13955 +
1615131 1665130 31 N 50000 contig no
1665131 1809206 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 AL928677.6 1 144076 +
1809207 1882043 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 AL929198.3 8794 81630 +
1882044 1887043 34 N 5000 No overlap in database    
1887044 1983261 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 AL845549.9 1 96218 +
1983262 1988261 36 N 5000 No overlap in database    
1988262 2082364 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 AL845545.5 1 94103 +
2082365 2138986 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 38 AL929461.3 2001 58622 +
2138987 2143986 39 N 5000 No overlap in database    
2143987 2243324 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 AL929295.7 1 99338 +
2243325 2248324 41 N 5000 No overlap in database    
2248325 2356521 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 AL928878.10 1 108197 +
2356522 2361521 43 N 5000 No overlap in database    
2361522 2409191 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 AL954332.7 1 47670 +
2409192 2517977 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 45 AL845544.11 2001 110786 +
2517978 2522977 46 N 5000 No overlap in database    
2522978 2598805 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 AL929329.2 1 75828 +
2598806 2648805 48 N 50000 contig no
2648806 2665492 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AL627163.3 1 16687 +
2665493 2752977 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 AL627170.5 1 87485 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-213M14
ctg4094
dZ213M14
EPN details
Submitted to EMBL
13-JAN-09
AL591406.6
finished
65872 Amemiya 3' / 5'
63872 / 1
- / -
2000
0.2
Identified
2003-10-21
find_overl...
badger
 
2 BUSM1-186F8
ctg4094
dZ186F8
EPN details
Submitted to EMBL
13-JAN-09
AL591391.5
finished
97640 Amemiya 3' / 5'
58124 / 1
- / -
39520
0.01
Identified
2003-10-21
find_overl...
badger
 
3 BUSM1-175P12
ctg4094
dZ175P12
EPN details
Submitted to EMBL
13-JAN-09
AL591401.5
finished
84068 Amemiya 3' / 5'
84068 / 2001
- / -
2004
1.1
Identified
2010-07-06
find_overl...
humpub
 
4 BUSM1-178A3
ctg4094
dZ178A3
EPN details
Submitted to EMBL
13-JAN-09
AL591372.3
finished
32933 Amemiya        
5 BUSM1-219H16
ctg4094
dZ219H16
EPN details
Submitted to EMBL
13-JAN-09
AL591427.2
finished
126202 Amemiya        
6 BUSM1-132M23
ctg4094
dZ132M23
EPN details
Submitted to EMBL
12-JAN-09
AL845510.8
finished
101241 Amemiya        
7 BUSM1-169I8
ctg4094
dZ169I8
EPN details
Submitted to EMBL
13-JAN-09
AL844870.6
finished
132503 Amemiya 5' / 3'
1 / 53413
- / -
74594
0.01
Identified
2003-10-27
find_overl...
badger
 
8 BUSM1-173M20
ctg4094
dZ173M20
EPN details
Submitted to EMBL
13-JAN-09
AL591497.2
finished
127998 Amemiya        
9 BUSM1-139E19
ctg4094
dZ139E19
EPN details
Submitted to EMBL
13-JAN-09
AL591418.11
finished
112025 Amemiya        
10 BUSM1-105L16
ctg4094
dZ105L16
EPN details
Submitted to EMBL
13-JAN-09
AL591382.3
finished
98934 Amemiya        
11 BUSM1-125J23
ctg4094
dZ125J23
EPN details
Submitted to EMBL
13-JAN-09
AL591405.3
finished
79994 Amemiya 5' / 3'
38217 / 106023
- / -
44089
3.42
Identified
2010-07-06
find_overl...
humpub
 
12 BUSM1-150L22
ctg4094
dZ150L22
EPN details
Submitted to EMBL
13-JAN-09
AL592105.14
finished
106023 Amemiya        
13 BUSM1-6I1
ctg4094
dZ6I1
EPN details
Submitted to EMBL
13-JAN-09
AL732544.12
finished
135141 Amemiya        
  GAP (type-3) length unknown                  
15 BUSM1-199M19
ctg4099
dZ199M19
EPN details
Submitted to EMBL
12-JAN-09
AL596024.5
finished
51817 Amemiya        
16 BUSM1-221H6
ctg4099
dZ221H6
EPN details
Submitted to EMBL
13-JAN-09
AL591420.5
finished
51019 Amemiya 5' / 5'
3978 / 1
- / -
3983
0.15
Identified
2003-07-03
find_overl...
badger
 
17 BUSM1-116C14
ctg4099
dZ116C14
EPN details
Submitted to EMBL
13-JAN-09
AL591482.3
finished
95364 Amemiya        
18 BUSM1-167D6
ctg4099
dZ167D6
EPN details
Analysed
08-AUG-03
AL929296.11
finished
54697 Amemiya 3' / 5'
54697 / 56159
- / 11961
44209
0.07
Identified
2004-03-05
find_overl...
badger
 
19 BUSM1-143H6
ctg4099
dZ143H6
EPN details
Analysed
21-APR-04
BX004831.16
finished
119156 Amemiya        
  GAP (type-3) length unknown                  
21 BUSM1-241N23
ctg4101
dZ241N23
EPN details
Analysed
10-MAR-04
BX294001.10
finished
13955 Amemiya        
  GAP (type-3) length unknown                  
23 BUSM1-70B1
ctg4111
dZ70B1
EPN details
Submitted to EMBL
12-JAN-09
AL928677.6
finished
144076 Amemiya 3' / 5'
144076 / 8794
- / 95
8804
0.92
Identified
2011-03-15
find_overl...
humpub
 
24 BUSM1-112P11
ctg4111
dZ112P11
EPN details
Submitted to EMBL
12-JAN-09
AL929198.3
finished
81630 Amemiya        
25 BUSM1-56J1
ctg4111
dZ56J1
EPN details
Analysed
18-FEB-03
AL845549.9
finished
96218 Amemiya        
26 BUSM1-221I3
ctg4111
dZ221I3
EPN details
Submitted to EMBL
12-JAN-09
AL845545.5
finished
94103 Amemiya 3' / 5'
94103 / 2001
- / -
2001
0.6
Identified
2010-07-06
find_overl...
humpub
 
27 BUSM1-180O5
ctg4111
dZ180O5
EPN details
Submitted to EMBL
12-JAN-09
AL929461.3
finished
58622 Amemiya        
28 BUSM1-71B9
ctg4111
dZ71B9
EPN details
Submitted to EMBL
12-JAN-09
AL929295.7
finished
99338 Amemiya        
29 BUSM1-148B8
ctg4111
dZ148B8
EPN details
Analysed
08-JUL-03
AL928878.10
finished
108197 Amemiya        
30 BUSM1-138C24
ctg4111
dZ138C24
EPN details
Analysed
30-JUL-03
AL954332.7
finished
47670 Amemiya 3' / 5'
47670 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
31 BUSM1-133F4
ctg4111
dZ133F4
EPN details
Submitted to EMBL
12-JAN-09
AL845544.11
finished
110786 Amemiya        
32 BUSM1-44F21
ctg4111
dZ44F21
EPN details
Submitted to EMBL
12-JAN-09
AL929329.2
finished
75828 Amemiya        
  GAP (type-3) length unknown                  
34 KT90
ctg4370
Cl/Pr KT90/PACKT90 swap
EPN details
Analysed
25-MAY-02
AL627163.3
finished
93831 - 3' / 3'
16687 / 87485
- / -
78235
2.86
Identified
2010-07-06
find_overl...
humpub
 
35 KT73
ctg4370
Cl/Pr KT73/PACKT73 swap
EPN details
Analysed
03-SEP-03
AL627170.5
finished
87485 -        

Statistics

Clone Summary

Number of gaps
4
Gap types
type-3
4
Total clones
31
Clone HTGS Phases
finished
31
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
301,439
Total finished length of fin clones w/ overlap
2,784,366
Total finished length of fin clones w/o overlap
2,482,927
Total overlap length of fin+unfin clones
301,439
Total finished length of fin+unfin clones w/ overlap
2,784,366
Total finished length of fin+unfin clones w/o overlap
2,482,927

Dovetails

# rank accession status length date
1 19 BX004831.16 unfinished 11,961 Thu, 02 Oct 2014 02:16
2 24 AL929198.3 unfinished 95 Thu, 02 Oct 2014 02:16

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Other links

* quick link - http://q.sanger.ac.uk/eko814jg