ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_6 (TPF updated: 2008-05-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-230D15
ctg4084
dZ230D15
EPN details
AL606723.7
finished
  GAP (type-3) length unknown    
3 BUSM1-204B6
ctg4085
Cl/Pr dZ204B6/dZ706B6 swap
EPN details
AL591374.5
finished
4 BUSM1-204D19
ctg4085
Cl/Pr dZ204D19/dZ706D19 swap
EPN details
AL591462.5
finished
5 BUSM1-150I12
ctg4085
Cl/Pr dZ150I12/dZ706I12 swap
EPN details
AL591365.14
finished
6 BUSM1-202L16
ctg4085
Cl/Pr dZ202L16/dZ706L16 swap
EPN details
AL591389.5
finished
7 BUSM1-52I16
ctg4085
Cl/Pr dZ52I16/dZ706A1 swap
EPN details
AL591370.10
finished
8 BUSM1-228E24
ctg4085
Cl/Pr dZ228E24/dZ706A5 swap
EPN details
AL591510.11
finished
  GAP (type-3) length unknown    
10 BUSM1-31B14
ctg4087
dZ31B14
EPN details
AL645795.3
finished
  GAP (type-3) length unknown    
12 IZAB-17B08
ctg6548
bY17B08
EPN details
AL929102.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 63674 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL606723.7 1 63674 +
63675 113674 2 N 50000 contig no
113675 215811 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL591374.5 1 102137 +
215812 220811 4 N 5000 No overlap in database    
220812 298053 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591462.5 1 77242 +
298054 378684 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591365.14 2001 82631 +
378685 471782 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591389.5 1 93098 +
471783 583732 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591370.10 1 111950 -
583733 625491 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591510.11 57821 99579 +
625492 675491 10 N 50000 contig no
675492 753491 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 AL645795.3 1 78000 +
753492 803491 12 N 50000 contig no
803492 848289 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AL929102.3 1 44798 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-230D15
ctg4084
dZ230D15
EPN details
Submitted to EMBL
12-JAN-09
AL606723.7
finished
63674 Amemiya        
  GAP (type-3) length unknown                  
3 BUSM1-204B6
ctg4085
Cl/Pr dZ204B6/dZ706B6 swap
EPN details
Analysed
23-MAR-03
AL591374.5
finished
102137 Amemiya        
4 BUSM1-204D19
ctg4085
Cl/Pr dZ204D19/dZ706D19 swap
EPN details
Submitted to EMBL
12-JAN-09
AL591462.5
finished
77242 Amemiya 3' / 5'
77242 / 2001
- / -
2044
1.2
Identified
2010-07-06
find_overl...
humpub
 
5 BUSM1-150I12
ctg4085
Cl/Pr dZ150I12/dZ706I12 swap
EPN details
Submitted to EMBL
12-JAN-09
AL591365.14
finished
84618 Amemiya 3' / 5'
82631 / 1
- / -
2000
2.02
Identified
2010-07-06
find_overl...
humpub
 
6 BUSM1-202L16
ctg4085
Cl/Pr dZ202L16/dZ706L16 swap
EPN details
Submitted to EMBL
12-JAN-09
AL591389.5
finished
93098 Amemiya 3' / 3'
93098 / 111950
- / -
19407
1.87
Identified
2010-07-06
find_overl...
humpub
 
7 BUSM1-52I16
ctg4085
Cl/Pr dZ52I16/dZ706A1 swap
EPN details
Submitted to EMBL
12-JAN-09
AL591370.10
finished
131033 Amemiya 5' / 5'
1 / 57821
- / -
59472
2.01
Identified
2010-07-06
find_overl...
humpub
 
8 BUSM1-228E24
ctg4085
Cl/Pr dZ228E24/dZ706A5 swap
EPN details
Submitted to EMBL
04-MAY-06
AL591510.11
finished
99579 Amemiya        
  GAP (type-3) length unknown                  
10 BUSM1-31B14
ctg4087
dZ31B14
EPN details
Submitted to EMBL
12-JAN-09
AL645795.3
finished
78000 Amemiya        
  GAP (type-3) length unknown                  
12 IZAB-17B08
ctg6548
bY17B08
EPN details
Analysed
18-MAR-03
AL929102.3
finished
44798 Incyte-BAC        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
82,923
Total finished length of fin clones w/ overlap
774,179
Total finished length of fin clones w/o overlap
691,256
Total overlap length of fin+unfin clones
82,923
Total finished length of fin+unfin clones w/ overlap
774,179
Total finished length of fin+unfin clones w/o overlap
691,256

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Other links

* quick link - http://q.sanger.ac.uk/dseiyyii