ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_6 (TPF updated: 2008-05-01)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-230D15
ctg4084
dZ230D15
AL606723.7
finished
  GAP (type-3) length unknown    
3 BUSM1-204B6
ctg4085
dZ204B6
AL591374.5
finished
4 BUSM1-204D19
ctg4085
dZ204D19
AL591462.5
finished
5 BUSM1-150I12
ctg4085
dZ150I12
AL591365.14
finished
6 BUSM1-202L16
ctg4085
dZ202L16
AL591389.5
finished
7 BUSM1-52I16
ctg4085
dZ52I16
AL591370.10
finished
8 BUSM1-228E24
ctg4085
dZ228E24
AL591510.11
finished
  GAP (type-3) length unknown    
10 BUSM1-31B14
ctg4087
dZ31B14
AL645795.3
finished
  GAP (type-3) length unknown    
12 IZAB-17B08
ctg6548
bY17B08
AL929102.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 63674 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL606723.7 1 63674 +
63675 113674 2 N 50000 contig no
113675 215811 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL591374.5 1 102137 +
215812 220811 4 N 5000 No overlap in database    
220812 298053 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591462.5 1 77242 +
298054 378684 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591365.14 2001 82631 +
378685 471782 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591389.5 1 93098 +
471783 583732 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591370.10 1 111950 -
583733 625491 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL591510.11 57821 99579 +
625492 675491 10 N 50000 contig no
675492 753491 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 AL645795.3 1 78000 +
753492 803491 12 N 50000 contig no
803492 848289 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AL929102.3 1 44798 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
82,923
Total finished length of fin clones w/ overlap
774,179
Total finished length of fin clones w/o overlap
691,256
Total overlap length of fin+unfin clones
82,923
Total finished length of fin+unfin clones w/ overlap
774,179
Total finished length of fin+unfin clones w/o overlap
691,256

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* quick link - http://q.sanger.ac.uk/dseiyyii