ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_5 (TPF updated: 2013-10-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 bGZ-142E16
ctg3175
bGZ142E16
EPN details
CR385072.5
finished
2 bGZ-160O4
ctg3175
bGZ160O4
EPN details
CR536602.5
finished
  GAP (type-3) length unknown    
4 RP71-Z91K11
ctg4771
Cl/Pr bZZ91K11/bGZ91K11 swap
EPN details
CR936854.1
finished
5 RP71-Z148G21
ctg4771
Cl/Pr bZZ148G21/zK25K11 swap
EPN details
CR388134.8
finished
  GAP (type-3) length unknown    
7 BUSM1-20K6
ctg90
dZ20K6
EPN details
CR385061.15
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 31940 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CR385072.5 1 31940 +
31941 36940 2 N 5000 No overlap in database    
36941 122075 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CR536602.5 1 85135 +
122076 172075 4 N 50000 contig no
172076 270603 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 CR936854.1 1 98528 -
270604 287737 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 CR388134.8 2001 19134 +
287738 337737 7 N 50000 contig no
337738 416876 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CR385061.15 1 79139 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 bGZ-142E16
ctg3175
bGZ142E16
EPN details
Analysed
31-MAY-05
CR385072.5
finished
31940 Genome Systems Zebrafish library        
2 bGZ-160O4
ctg3175
bGZ160O4
EPN details
Analysed
26-MAY-05
CR536602.5
finished
85135 Genome Systems Zebrafish library        
  GAP (type-3) length unknown                  
4 RP71-Z91K11
ctg4771
Cl/Pr bZZ91K11/bGZ91K11 swap
EPN details
Analysed
26-MAY-05
CR936854.1
finished
98528 RPCI-71 5' / 5'
1 / 2001
- / -
2000
0
Identified
2008-09-06
find_overl...
humpub
 
5 RP71-Z148G21
ctg4771
Cl/Pr bZZ148G21/zK25K11 swap
EPN details
Analysed
29-JUL-05
CR388134.8
finished
19134 RPCI-71        
  GAP (type-3) length unknown                  
7 BUSM1-20K6
ctg90
dZ20K6
EPN details
Analysed
09-NOV-05
CR385061.15
finished
79139 Amemiya        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
313,876
Total finished length of fin clones w/o overlap
311,876
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
313,876
Total finished length of fin+unfin clones w/o overlap
311,876

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Other links

* quick link - http://q.sanger.ac.uk/7hc97qrl