ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_3 (TPF updated: 2011-07-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 IZAB-119C3
ctg306
bY119C3
EPN details
AL845551.2
finished
  GAP (type-3) length unknown    
3
ctg4047
Cl/Pr AL669883/dZ37M10 swap
EPN details
AL669883.1
finished
4
ctg4047
Cl/Pr AL669882/dZ37M10 swap
EPN details
AL669882.1
finished
5 BUSM1-107D16
ctg4047
dZ107D16
EPN details
AL591671.8
finished
6 BUSM1-180G5
ctg4047
dZ180G5
EPN details
AL604064.10
finished
7 BUSM1-70K15
ctg4047
dZ70K15
EPN details
AL672155.6
finished
8 BUSM1-94E17
ctg4047
dZ94E17
EPN details
AL596203.6
finished
9 BUSM1-48O22
ctg4047
dZ48O22
EPN details
AL591664.6
finished
  GAP (type-3) length unknown    
11 BUSM1-163L24
ctg4048
dZ163L24
EPN details
AL591669.5
finished
12 BUSM1-259M24
ctg4048
dZ259M24
EPN details
AL591676.10
finished
  GAP (type-3) length unknown    
14 BUSM1-127I14
ctg4051
dZ127I14
EPN details
BX548251.5
finished
15 BUSM1-216C6
ctg4051
dZ216C6
EPN details
BX546501.6
finished
  GAP (type-3) length unknown    
17 BUSM1-118J2
ctg4057
dZ118J2
EPN details
BX004811.6
finished
  GAP (type-3) length unknown    
19 BUSM1-254O17
ctg4369
dZ254O17
EPN details
AL645782.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 40374 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL845551.2 1 40374 +
40375 90374 2 N 50000 contig no
90375 95325 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL669883.1 1 4951 +
95326 100325 4 N 5000 No overlap in database    
100326 124019 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 AL669882.1 1 23694 +
124020 209999 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 AL591671.8 1 85980 +
210000 214999 7 N 5000 No overlap in database    
215000 351040 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 AL604064.10 1 136041 +
351041 356040 9 N 5000 No overlap in database    
356041 367454 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AL672155.6 1 11414 +
367455 469560 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AL596203.6 2001 104106 +
469561 474560 12 N 5000 No overlap in database    
474561 544229 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AL591664.6 1 69669 +
544230 594229 14 N 50000 contig no
594230 702068 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 16 AL591669.5 1 107839 +
702069 731781 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 16 AL591676.10 2001 31713 +
731782 781781 17 N 50000 contig no
781782 897097 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 19 BX548251.5 1 115316 +
897098 962118 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 19 BX546501.6 2001 67021 +
962119 1012118 20 N 50000 contig no
1012119 1092878 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 BX004811.6 1 80760 +
1092879 1142878 22 N 50000 contig no
1142879 1262263 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 AL645782.2 1 119385 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 IZAB-119C3
ctg306
bY119C3
EPN details
Analysed
26-NOV-02
AL845551.2
finished
40374 Incyte-BAC        
  GAP (type-3) length unknown                  
3
ctg4047
Cl/Pr AL669883/dZ37M10 swap
EPN details
Submitted to EMBL
12-JAN-09
AL669883.1
finished
4951 -        
4
ctg4047
Cl/Pr AL669882/dZ37M10 swap
EPN details
Submitted to EMBL
12-JAN-09
AL669882.1
finished
25694 - 3' / 5'
23694 / 1
- / -
2006
1.95
Identified
2010-07-06
find_overl...
humpub
 
5 BUSM1-107D16
ctg4047
dZ107D16
EPN details
Submitted to EMBL
12-JAN-09
AL591671.8
finished
85980 Amemiya        
6 BUSM1-180G5
ctg4047
dZ180G5
EPN details
Submitted to EMBL
12-JAN-09
AL604064.10
finished
136041 Amemiya        
7 BUSM1-70K15
ctg4047
dZ70K15
EPN details
Submitted to EMBL
12-JAN-09
AL672155.6
finished
11414 Amemiya 3' / 5'
11414 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
8 BUSM1-94E17
ctg4047
dZ94E17
EPN details
Submitted to EMBL
12-JAN-09
AL596203.6
finished
104106 Amemiya        
9 BUSM1-48O22
ctg4047
dZ48O22
EPN details
Submitted to EMBL
12-JAN-09
AL591664.6
finished
69669 Amemiya        
  GAP (type-3) length unknown                  
11 BUSM1-163L24
ctg4048
dZ163L24
EPN details
Submitted to EMBL
12-JAN-09
AL591669.5
finished
107839 Amemiya 3' / 5'
107839 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
12 BUSM1-259M24
ctg4048
dZ259M24
EPN details
Submitted to EMBL
12-JAN-09
AL591676.10
finished
31713 Amemiya        
  GAP (type-3) length unknown                  
14 BUSM1-127I14
ctg4051
dZ127I14
EPN details
Analysed
29-SEP-04
BX548251.5
finished
115316 Amemiya 3' / 5'
115316 / 2001
- / -
2000
0
Identified
2004-09-04
find_overl...
badger
 
15 BUSM1-216C6
ctg4051
dZ216C6
EPN details
Analysed
28-SEP-04
BX546501.6
finished
67021 Amemiya        
  GAP (type-3) length unknown                  
17 BUSM1-118J2
ctg4057
dZ118J2
EPN details
Submitted to EMBL
12-JAN-09
BX004811.6
finished
80760 Amemiya        
  GAP (type-3) length unknown                  
19 BUSM1-254O17
ctg4369
dZ254O17
EPN details
Analysed
28-MAY-02
AL645782.2
finished
119385 Amemiya        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-3
5
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
8,006
Total finished length of fin clones w/ overlap
1,000,263
Total finished length of fin clones w/o overlap
992,257
Total overlap length of fin+unfin clones
8,006
Total finished length of fin+unfin clones w/ overlap
1,000,263
Total finished length of fin+unfin clones w/o overlap
992,257

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Other links

* quick link - http://q.sanger.ac.uk/7hpmmmjn