ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_2 (TPF updated: 2006-11-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-1C23
ctg4035
dZ1C23
EPN details
AL591511.2
finished
2 BUSM1-18F12
ctg4035
dZ18F12
EPN details
AL592550.11
finished
3 BUSM1-138K18
ctg4035
dZ138K18
EPN details
AL732505.5
finished
4 BUSM1-172D23
ctg4035
dZ172D23
EPN details
AL591399.3
finished
5 BUSM1-244O13
ctg4035
dZ244O13
EPN details
AL591597.8
finished
6 BUSM1-71H18
ctg4035
dZ71H18
EPN details
AL596128.9
finished
7 BUSM1-251F2
ctg4035
dZ251F2
EPN details
AL672198.4
finished
8 BUSM1-40G1
ctg4035
dZ40G1
EPN details
AL591674.3
finished
9 BUSM1-198M22
ctg4035
dZ198M22
EPN details
AL591589.5
finished
  GAP (type-3) length unknown    
11 BUSM1-204C9
ctg4040
dZ204C9
EPN details
AL591517.8
finished
  GAP (type-3) length unknown    
13 BUSM1-101L20
ctg4043
dZ101L20
EPN details
AL591481.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 74508 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL591511.2 1 74508 -
74509 168989 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL592550.11 1 94481 -
168990 173989 3 N 5000 No overlap in database    
173990 190019 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AL732505.5 1 16030 +
190020 285793 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AL591399.3 1 95774 -
285794 324549 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AL591597.8 1 38756 -
324550 415476 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 AL596128.9 1 90927 -
415477 420476 8 N 5000 No overlap in database    
420477 445455 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL672198.4 1 24979 +
445456 539500 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL591674.3 2001 96045 +
539501 580202 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 11 AL591589.5 2000 42701 +
580203 630202 12 N 50000 contig no
630203 741036 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AL591517.8 1 110834 +
741037 791036 14 N 50000 contig no
791037 891353 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AL591481.5 1 100317 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-1C23
ctg4035
dZ1C23
EPN details
Submitted to EMBL
12-JAN-09
AL591511.2
finished
74508 Amemiya 5' / 3'
1 / 94481
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
2 BUSM1-18F12
ctg4035
dZ18F12
EPN details
Submitted to EMBL
12-JAN-09
AL592550.11
finished
96481 Amemiya        
3 BUSM1-138K18
ctg4035
dZ138K18
EPN details
Analysed
23-NOV-02
AL732505.5
finished
16030 Amemiya 3' / 3'
16030 / 95774
- / -
2000
0
Identified
2003-10-16
find_overl...
badger
 
4 BUSM1-172D23
ctg4035
dZ172D23
EPN details
Submitted to EMBL
12-JAN-09
AL591399.3
finished
97774 Amemiya 5' / 3'
1 / 38756
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
5 BUSM1-244O13
ctg4035
dZ244O13
EPN details
Analysed
08-MAR-02
AL591597.8
finished
40756 Amemiya 5' / 3'
1 / 90927
- / -
2000
0
Identified
2004-05-17
find_overl...
badger
 
6 BUSM1-71H18
ctg4035
dZ71H18
EPN details
Submitted to EMBL
12-JAN-09
AL596128.9
finished
92927 Amemiya        
7 BUSM1-251F2
ctg4035
dZ251F2
EPN details
Analysed
06-NOV-02
AL672198.4
finished
24979 Amemiya 3' / 5'
24979 / 2001
- / -
2000
0
Identified
2003-07-03
find_overl...
badger
 
8 BUSM1-40G1
ctg4035
dZ40G1
EPN details
Submitted to EMBL
12-JAN-09
AL591674.3
finished
96045 Amemiya 3' / 5'
96045 / 2000
- / -
1999
0
Identified
2003-07-03
find_overl...
badger
 
9 BUSM1-198M22
ctg4035
dZ198M22
EPN details
Submitted to EMBL
12-JAN-09
AL591589.5
finished
42701 Amemiya        
  GAP (type-3) length unknown                  
11 BUSM1-204C9
ctg4040
dZ204C9
EPN details
Analysed
24-JAN-02
AL591517.8
finished
110834 Amemiya        
  GAP (type-3) length unknown                  
13 BUSM1-101L20
ctg4043
dZ101L20
EPN details
Submitted to EMBL
12-JAN-09
AL591481.5
finished
100317 Amemiya        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
11,999
Total finished length of fin clones w/ overlap
793,352
Total finished length of fin clones w/o overlap
781,353
Total overlap length of fin+unfin clones
11,999
Total finished length of fin+unfin clones w/ overlap
793,352
Total finished length of fin+unfin clones w/o overlap
781,353

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Other links

* quick link - http://q.sanger.ac.uk/qo556gw7