ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region AB_1 (TPF updated: 2013-10-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 BUSM1-173A8
ctg4019
dZ173A8
EPN details
AL606751.5
finished
2 BUSM1-47G21
ctg4019
dZ47G21
EPN details
BX279522.4
finished
  GAP (type-3) length unknown    
4 BUSM1-79F24
ctg4020
dZ79F24
EPN details
AL606727.3
finished
  GAP (type-3) length unknown    
6 BUSM1-225A24
ctg85
dZ225A24
EPN details
CR854949.20
finished
  GAP (type-3) length unknown    
8 BUSM1-61A10
ctg87
dZ61A10
EPN details
AL713856.7
finished
9 BUSM1-27N24
ctg87
dZ27N24
EPN details
AL606722.18
finished
10 BUSM1-78P07
ctg87
dZ78P07
EPN details
AL713963.13
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 90509 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL606751.5 1 90509 +
90510 201036 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 BX279522.4 1 110527 -
201037 251036 3 N 50000 contig no
251037 348246 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL606727.3 1 97210 +
348247 398246 5 N 50000 contig no
398247 480707 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 CR854949.20 1 82461 +
480708 530707 7 N 50000 contig no
530708 534998 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 AL713856.7 1 4291 +
534999 607908 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 AL606722.18 2001 74910 +
607909 612908 10 N 5000 No overlap in database    
612909 714497 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 AL713963.13 1 101589 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 BUSM1-173A8
ctg4019
dZ173A8
EPN details
Submitted to EMBL
12-JAN-09
AL606751.5
finished
104334 Amemiya 3' / 3'
90509 / 110527
- / -
14010
1.99
Identified
2010-07-06
find_overl...
humpub
 
2 BUSM1-47G21
ctg4019
dZ47G21
EPN details
Analysed
28-FEB-04
BX279522.4
finished
110527 Amemiya        
  GAP (type-3) length unknown                  
4 BUSM1-79F24
ctg4020
dZ79F24
EPN details
Submitted to EMBL
12-JAN-09
AL606727.3
finished
97210 Amemiya        
  GAP (type-3) length unknown                  
6 BUSM1-225A24
ctg85
dZ225A24
EPN details
Analysed
28-NOV-06
CR854949.20
finished
82461 Amemiya        
  GAP (type-3) length unknown                  
8 BUSM1-61A10
ctg87
dZ61A10
EPN details
Submitted to EMBL
12-JAN-09
AL713856.7
finished
4291 Amemiya 3' / 5'
4291 / 2001
- / -
2000
0
Identified
2003-10-21
find_overl...
badger
 
9 BUSM1-27N24
ctg87
dZ27N24
EPN details
Submitted to EMBL
12-JAN-09
AL606722.18
finished
74910 Amemiya        
10 BUSM1-78P07
ctg87
dZ78P07
EPN details
Analysed
20-AUG-03
AL713963.13
finished
101589 Amemiya        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
16,010
Total finished length of fin clones w/ overlap
575,322
Total finished length of fin clones w/o overlap
559,312
Total overlap length of fin+unfin clones
16,010
Total finished length of fin+unfin clones w/ overlap
575,322
Total finished length of fin+unfin clones w/o overlap
559,312

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Other links

* quick link - http://q.sanger.ac.uk/f73iozwp