ChromoView - clone / Assembly sequencing status

Pig: Sub region Pig_MHC-II (TPF updated: 2004-07-07)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 PigI-548A10
pig_mhc-II
Cl/Pr bI548A10/bS548A10 swap
EPN details
BX548169.4
finished
2 PigI-35B1
pig_mhc-II
Cl/Pr bI35B1/bS35B1 swap
EPN details
AL773591.7
finished
3 PigI-711D2
pig_mhc-II
Cl/Pr bI711D2/bS711D2 swap
EPN details
AL773559.16
finished
4 PigI-707F1
pig_mhc-II
Cl/Pr bI707F1/bS707F1 swap
EPN details
AL773527.8
finished
5 PigI-514B12
pig_mhc-II
Cl/Pr bI514B12/bS514B12 swap
EPN details
AL773560.9
finished
6 PigI-446E4
pig_mhc-II
Cl/Pr bI446E4/bS446E4 swap
EPN details
BX322232.4
finished
7 PigI-649D6
pig_mhc-II
Cl/Pr bI649D6/bS649D6 swap
EPN details
AL773562.15
finished
8 PigI-339A5

Cl/Pr bI339A5/bS339A5 swap
EPN details
AL773521.18
finished
  GAP (type-4) length 500 bps    
10 PigI-43B6
pig_mhc-II
Cl/Pr bI43B6/bS43B6 swap
EPN details
BX323846.2
finished
11 PigI-591C4
pig_mhc-II
Cl/Pr bI591C4/bS591C4 swap
EPN details
BX088590.7
finished
12 PigI-554F3
pig_mhc-II
Cl/Pr bI554F3/bS554F3 swap
EPN details
BX323833.4
finished
13 PigI-1044B7
pig_mhc-II
Cl/Pr bI1044B7/bS1044B7 swap
EPN details
BX324144.4
finished
14 PigI-279G2
pig_mhc-II
Cl/Pr bI279G2/bS279G2 swap
EPN details
BX640585.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 101248 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 BX548169.4 1 101248 -
101249 217652 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL773591.7 1 116404 -
217653 248222 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL773559.16 1 30570 -
248223 383508 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL773527.8 1 135286 -
383509 488921 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL773560.9 1 105413 -
488922 490915 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 BX322232.4 1 1994 -
490916 616180 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL773562.15 1 125265 -
616181 686734 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 8 AL773521.18 1 70554 -
686735 687234 9 N 500 contig no
687235 767383 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 14 BX323846.2 1 80149 -
767384 931173 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 14 BX088590.7 1 163790 -
931174 1050656 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 14 BX323833.4 1 119483 -
1050657 1172966 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 14 BX324144.4 1 122310 -
1172967 1267061 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 14 BX640585.2 1 94095 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 PigI-548A10
pig_mhc-II
Cl/Pr bI548A10/bS548A10 swap
EPN details
Submitted to EMBL
18-MAY-07
BX548169.4
finished
101248 SBAB bI Clones 5' / 3'
1 / 116404
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
2 PigI-35B1
pig_mhc-II
Cl/Pr bI35B1/bS35B1 swap
EPN details
Submitted to EMBL
05-JUN-07
AL773591.7
finished
118404 SBAB bI Clones 5' / 3'
1 / 30570
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
3 PigI-711D2
pig_mhc-II
Cl/Pr bI711D2/bS711D2 swap
EPN details
Submitted to EMBL
17-MAY-07
AL773559.16
finished
32570 SBAB bI Clones 5' / 3'
1 / 135286
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
4 PigI-707F1
pig_mhc-II
Cl/Pr bI707F1/bS707F1 swap
EPN details
Submitted to EMBL
07-JUN-07
AL773527.8
finished
137286 SBAB bI Clones 5' / 3'
1 / 105413
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
5 PigI-514B12
pig_mhc-II
Cl/Pr bI514B12/bS514B12 swap
EPN details
Submitted to EMBL
18-MAY-07
AL773560.9
finished
107413 SBAB bI Clones 5' / 3'
1 / 1994
- / -
2007
0
Identified
2008-11-28
find_overl...
humpub
 
6 PigI-446E4
pig_mhc-II
Cl/Pr bI446E4/bS446E4 swap
EPN details
Submitted to EMBL
17-MAY-07
BX322232.4
finished
4001 SBAB bI Clones 5' / 3'
1 / 125265
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
7 PigI-649D6
pig_mhc-II
Cl/Pr bI649D6/bS649D6 swap
EPN details
Submitted to EMBL
17-MAY-07
AL773562.15
finished
127265 SBAB bI Clones 5' / 3'
1 / 70554
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
8 PigI-339A5

Cl/Pr bI339A5/bS339A5 swap
EPN details
Submitted to EMBL
17-MAY-07
AL773521.18
finished
72554 SBAB bI Clones        
  GAP (type-4) length 500 bps                  
10 PigI-43B6
pig_mhc-II
Cl/Pr bI43B6/bS43B6 swap
EPN details
Submitted to EMBL
17-MAY-07
BX323846.2
finished
80149 SBAB bI Clones 5' / 3'
1 / 163790
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
11 PigI-591C4
pig_mhc-II
Cl/Pr bI591C4/bS591C4 swap
EPN details
Submitted to EMBL
17-MAY-07
BX088590.7
finished
165790 SBAB bI Clones 5' / 3'
1 / 119483
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
12 PigI-554F3
pig_mhc-II
Cl/Pr bI554F3/bS554F3 swap
EPN details
Submitted to EMBL
17-MAY-07
BX323833.4
finished
121483 SBAB bI Clones 5' / 3'
1 / 122310
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
13 PigI-1044B7
pig_mhc-II
Cl/Pr bI1044B7/bS1044B7 swap
EPN details
Submitted to EMBL
17-MAY-07
BX324144.4
finished
124310 SBAB bI Clones 5' / 3'
1 / 94095
- / -
2000
0
Identified
2008-11-28
find_overl...
humpub
 
14 PigI-279G2
pig_mhc-II
Cl/Pr bI279G2/bS279G2 swap
EPN details
Submitted to EMBL
17-MAY-07
BX640585.2
finished
96095 SBAB bI Clones        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-4
1
Total clones
13
Clone HTGS Phases
finished
13
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
22,007
Total finished length of fin clones w/ overlap
1,216,014
Total finished length of fin clones w/o overlap
1,194,007
Total overlap length of fin+unfin clones
22,007
Total finished length of fin+unfin clones w/ overlap
1,216,014
Total finished length of fin+unfin clones w/o overlap
1,194,007

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Other links

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