ChromoView - clone / Assembly sequencing status

Zebrafish: Chromosome U (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ZFOS-536A2
ctg10164
zF536A2
EPN details
FP236251.7
finished
2 CH1073-151H15
ctg10164
zFD151H15
EPN details
CU655832.15
finished
  GAP (type-3) length unknown    
4 CH1073-331A4
ctg10234
zFD331A4
EPN details
CU693376.6
finished
5 CH1073-380P6
ctg10234
zFD380P6
EPN details
CU693450.3
finished
6 ZFOS-798D3
ctg10234
zF798D3
EPN details
CU693439.4
finished
  GAP (type-3) length unknown    
8 CH1073-96F7
ctg10242
zFD96F7
EPN details
CU627990.7
finished
  GAP (type-3) length unknown    
10 CH1073-413J6
ctg10279
zFD413J6
EPN details
CU694263.3
finished
  GAP (type-3) length unknown    
12 ZFOS-412B2
ctg10330
zF412B2
EPN details
CU565476.11
finished
  GAP (type-3) length unknown    
14 CH1073-272E2
ctg10332
zFD272E2
EPN details
FP017150.5
finished
  GAP (type-3) length unknown    
16 CH1073-174O23
ctg10336
zFD174O23
EPN details
CU481368.4
finished
17 CH1073-18O17
ctg10336
zFD18O17
EPN details
CU929214.4
finished
18 CH1073-476O20
ctg10336
zFD476O20
EPN details
CU651595.5
finished
  GAP (type-3) length unknown    
20 CH1073-469G4
ctg10406
zFD469G4
EPN details
CU694219.4
finished
  GAP (type-3) length unknown    
22 CH1073-163N18
ctg10414
zFD163N18
EPN details
CU929174.5
finished
  GAP (type-3) length unknown    
24 CH1073-442M7
ctg10504
zFD442M7
EPN details
CU550713.6
finished
  GAP (type-3) length unknown    
26 CH1073-252I20
ctg10523
zFD252I20
EPN details
CU571247.1
finished
  GAP (type-3) length unknown    
28 CH1073-306H23
ctg10543
zFD306H23
EPN details
CU655842.5
finished
29 CH1073-234P20
ctg10543
zFD234P20
EPN details
CU693480.10
finished
30 CH1073-239D21
ctg10543
zFD239D21
EPN details
CU693444.5
finished
  GAP (type-3) length unknown    
32 CH73-302C13
ctg10552
zH302C13
EPN details
CU855923.13
finished
33 CH1073-458F6
ctg10552
zFD458F6
EPN details
CU693485.3
finished
  GAP (type-3) length unknown    
35 CH1073-104I3
ctg10558
zFD104I3
EPN details
CU855947.7
finished
36 ZFOS-254H3
ctg10558
zF254H3
EPN details
CU929113.7
finished
  GAP (type-3) length unknown    
38 CH73-378B3
ctg10562
zH378B3
EPN details
CU856137.11
finished
  GAP (type-3) length unknown    
40 CH1073-369C19
ctg10576
zFD369C19
EPN details
CU855914.9
finished
  GAP (type-3) length unknown    
42 CH73-369A7
ctg10586
zH369A7
EPN details
CU861477.6
finished
43 ZFOS-295B12
ctg10586
zF295B12
EPN details
FP085610.4
finished
  GAP (type-3) length unknown    
45 CH1073-297E7
ctg10604
zFD297E7
EPN details
CU914615.3
finished
46 CH1073-222K14
ctg10604
zFD222K14
EPN details
FP102116.1
finished
  GAP (type-3) length unknown    
48 CH1073-222I16
ctg10614
zFD222I16
EPN details
CU928151.5
finished
49 CH1073-470L8
ctg10614
zFD470L8
EPN details
CU928134.5
finished
  GAP (type-3) length unknown    
51 ZFOS-2107B6
ctg10661
zF2107B6
EPN details
FO704637.1
contiguous
  GAP (type-3) length unknown    
53 CH1073-153C21
ctg10670
zFD153C21
EPN details
FO704920.1
contiguous
  GAP (type-3) length unknown    
55 CH1073-347L19
ctg10676
zFD347L19
EPN details
FO538758.1
contiguous
  GAP (type-3) length unknown    
57 ZFOS-1191G7
ctg10705
zF1191G7
EPN details
FO704795.1
contiguous
  GAP (type-3) length unknown    
59 CH1073-283D23
ctg10715
zFD283D23
EPN details
FO704916.1
contiguous
  GAP (type-3) length unknown    
61 DKEY-36K5
ctg1235
zK36K5
EPN details
BX005448.16
finished
  GAP (type-3) length unknown    
63 DKEY-204O6
ctg1424
zK204O6
EPN details
CR788286.12
finished
  GAP (type-3) length unknown    
65 CH211-132N12
ctg1924
zC132N12
EPN details
BX942821.24
finished
  GAP (type-3) length unknown    
67 DKEYP-111A3
ctg2205
zKp111A3
EPN details
BX649314.6
finished
  GAP (type-3) length unknown    
69 CH73-1M8
ctg236
zH1M8
EPN details
CU468684.7
finished
  GAP (type-3) length unknown    
71 CH211-243G5
ctg2405
zC243G5
EPN details
CR762420.25
finished
  GAP (type-3) length unknown    
73 CH211-195E6
ctg2462
zC195E6
EPN details
CR855265.41
finished
  GAP (type-3) length unknown    
75 CH211-101J4
ctg2478
zC101J4
EPN details
CT583714.7
finished
  GAP (type-3) length unknown    
77 CH211-59G18
ctg2497
zC59G18
EPN details
CR388003.10
finished
  GAP (type-3) length unknown    
79 CH211-242E19
ctg2612
zC242E19
EPN details
CR847893.16
finished
  GAP (type-3) length unknown    
81 CH211-13F6
ctg2688
zC13F6
EPN details
AL929028.29
finished
  GAP (type-3) length unknown    
83 DKEYP-90E1
ctg2689
zKp90E1
EPN details
BX664622.10
finished
  GAP (type-3) length unknown    
85 CH211-32A20
ctg2784
zC32A20
EPN details
BX927374.34
finished
86 DKEY-78I4
ctg2784
zK78I4
EPN details
CR927215.14
finished
  GAP (type-3) length unknown    
88 RP71-84E6
ctg2805
bZ84E6
EPN details
BX465848.13
finished
  GAP (type-3) length unknown    
90 DKEY-19D22
ctg2934
zK19D22
EPN details
CR792415.19
finished
  GAP (type-3) length unknown    
92 CH73-359P4
ctg2970
zH359P4
EPN details
FP236453.6
finished
93 DKEY-109D19
ctg2970
zK109D19
EPN details
CR388176.8
finished
  GAP (type-3) length unknown    
95 DKEY-228P6
ctg3089
zK228P6
EPN details
BX649254.17
unfinished
  GAP (type-3) length unknown    
97 CH73-78M16
ctg3090
zH78M16
EPN details
CR974440.6
finished
98 DKEY-210K16
ctg3090
zK210K16
EPN details
CT737155.10
unfinished
  GAP (type-3) length unknown    
100 CH211-15F21
ctg317
zC15F21
EPN details
AL929029.7
finished
  GAP (type-3) length unknown    
102 DKEY-189P19
ctg3234
zK189P19
EPN details
BX640586.12
finished
  GAP (type-3) length unknown    
104 RP71-76M23
ctg3235
bZ76M23
EPN details
BX571669.7
finished
  GAP (type-3) length unknown    
106 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
BX511020.10
finished
  GAP (type-3) length unknown    
108 DKEY-279K14
ctg3274
zK279K14
EPN details
CT737209.18
finished
  GAP (type-3) length unknown    
110 CH211-232H22
ctg349
zC232H22
EPN details
BX276122.23
finished
  GAP (type-3) length unknown    
112 CH211-198G14
ctg386
zC198G14
EPN details
BX248128.20
finished
  GAP (type-3) length unknown    
114 DKEY-195E19
ctg470
zK195E19
EPN details
BX510909.19
finished
  GAP (type-3) length unknown    
116 CH73-126L22
ctg48
zH126L22
EPN details
FP340267.29
finished
  GAP (type-3) length unknown    
118 CH73-63A16
ctg52
zH63A16
EPN details
FQ312016.3
finished
  GAP (type-3) length unknown    
120 CH73-44O18
ctg6100
zH44O18
EPN details
CU855916.11
finished
121 CH73-99C6
ctg6100
zH99C6
EPN details
CU861458.10
finished
  GAP (type-3) length unknown    
123 CH211-134C10
ctg6109
zC134C10
EPN details
CU182823.7
finished
  GAP (type-3) length unknown    
125 CH211-153N7
ctg6126
zC153N7
EPN details
CU138506.27
finished
  GAP (type-3) length unknown    
127 DKEY-188L18
ctg6301
zK188L18
EPN details
CU280673.12
finished
  GAP (type-3) length unknown    
129 DKEY-156C23
ctg6308
zK156C23
EPN details
CU457778.8
finished
  GAP (type-3) length unknown    
131 DKEY-260J10
ctg6325
zK260J10
EPN details
CU182107.11
finished
  GAP (type-3) length unknown    
133 CH211-236G14
ctg6693
zC236G14
EPN details
CR391997.9
finished
  GAP (type-3) length unknown    
135 CH211-248K15
ctg8005
zC248K15
EPN details
CT025651.9
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 38821 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP236251.7 1 38821 +
38822 49547 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU655832.15 2001 12726 +
49548 99547 3 N 50000 contig no
99548 108367 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CU693376.6 1 8820 +
108368 141984 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CU693450.3 2001 35617 +
141985 174976 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CU693439.4 2001 34992 +
174977 224976 7 N 50000 contig no
224977 259183 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CU627990.7 1 34207 +
259184 309183 9 N 50000 contig no
309184 344735 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CU694263.3 1 35552 +
344736 394735 11 N 50000 contig no
394736 433188 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 CU565476.11 1 38453 +
433189 483188 13 N 50000 contig no
483189 517683 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 FP017150.5 1 34495 +
517684 567683 15 N 50000 contig no
567684 599903 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CU481368.4 1 32220 -
599904 622318 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CU929214.4 2001 24415 +
622319 653789 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 CU651595.5 1 31471 -
653790 703789 19 N 50000 contig no
703790 735566 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 CU694219.4 1 31777 +
735567 785566 21 N 50000 contig no
785567 821601 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CU929174.5 1 36035 +
821602 871601 23 N 50000 contig no
871602 910325 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 CU550713.6 1 38724 +
910326 960325 25 N 50000 contig no
960326 996864 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 CU571247.1 1 36539 +
996865 1046864 27 N 50000 contig no
1046865 1081889 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CU655842.5 1 35025 +
1081890 1110047 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CU693480.10 2001 30158 +
1110048 1131169 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 30 CU693444.5 2001 23122 +
1131170 1181169 31 N 50000 contig no
1181170 1262426 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 CU855923.13 1 81257 -
1262427 1294694 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 33 CU693485.3 1 32268 -
1294695 1344694 34 N 50000 contig no
1344695 1373069 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CU855947.7 1 28375 +
1373070 1410642 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CU929113.7 1 37573 -
1410643 1460642 37 N 50000 contig no
1460643 1562037 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 CU856137.11 1 101395 +
1562038 1612037 39 N 50000 contig no
1612038 1646299 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 CU855914.9 1 34262 +
1646300 1696299 41 N 50000 contig no
1696300 1756414 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 43 CU861477.6 1 60115 -
1756415 1792701 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 43 FP085610.4 1 36287 -
1792702 1842701 44 N 50000 contig no
1842702 1862939 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 CU914615.3 1 20238 +
1862940 1894819 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 46 FP102116.1 1 31880 -
1894820 1944819 47 N 50000 contig no
1944820 1977510 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 CU928151.5 1 32691 +
1977511 2008653 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 CU928134.5 2001 33143 +
2008654 2058653 50 N 50000 contig no
2058654 2100117 51 A FO704637.1 1 41464 +
2100118 2150117 52 N 50000 contig no
2150118 2208551 53 A FO704920.1 1 58434 +
2208552 2258551 54 N 50000 contig no
2258552 2302147 55 A FO538758.1 1 43596 +
2302148 2352147 56 N 50000 contig no
2352148 2395284 57 A FO704795.1 1 43137 +
2395285 2445284 58 N 50000 contig no
2445285 2478242 59 A FO704916.1 1 32958 +
2478243 2528242 60 N 50000 contig no
2528243 2665710 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 BX005448.16 1 137468 +
2665711 2715710 62 N 50000 contig no
2715711 2868570 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 CR788286.12 1 152860 +
2868571 2918570 64 N 50000 contig no
2918571 3077627 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 BX942821.24 1 159057 +
3077628 3127627 66 N 50000 contig no
3127628 3298030 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 67 BX649314.6 1 170403 +
3298031 3348030 68 N 50000 contig no
3348031 3482021 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 69 CU468684.7 1 133991 +
3482022 3532021 70 N 50000 contig no
3532022 3696801 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 CR762420.25 1 164780 +
3696802 3746801 72 N 50000 contig no
3746802 3933366 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 CR855265.41 1 186565 +
3933367 3983366 74 N 50000 contig no
3983367 4130723 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 CT583714.7 1 147357 +
4130724 4180723 76 N 50000 contig no
4180724 4366212 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CR388003.10 1 185489 +
4366213 4416212 78 N 50000 contig no
4416213 4581880 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CR847893.16 1 165668 +
4581881 4631880 80 N 50000 contig no
4631881 4814252 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 AL929028.29 1 182372 +
4814253 4864252 82 N 50000 contig no
4864253 5036697 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 83 BX664622.10 1 172445 +
5036698 5086697 84 N 50000 contig no
5086698 5249890 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 86 BX927374.34 1 163193 -
5249891 5429715 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 86 CR927215.14 1 179825 -
5429716 5479715 87 N 50000 contig no
5479716 5659126 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 88 BX465848.13 1 179411 +
5659127 5709126 89 N 50000 contig no
5709127 5942319 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 90 CR792415.19 1 233193 +
5942320 5992319 91 N 50000 contig no
5992320 6004605 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 93 FP236453.6 1 12286 -
6004606 6161780 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 93 CR388176.8 1 157175 -
6161781 6211780 94 N 50000 contig no
6211781 6261780 95 N 50000 clone no
6261781 6311780 96 N 50000 contig no
6311781 6435246 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 CR974440.6 1 123466 +
6435247 6485246 98 N 50000 clone no
6485247 6535246 99 N 50000 contig no
6535247 6727825 100 FClick to retrieve finished assembled sequence in green bar: rank(s) 100 - 100 AL929029.7 1 192579 +
6727826 6777825 101 N 50000 contig no
6777826 6814736 102 FClick to retrieve finished assembled sequence in green bar: rank(s) 102 - 102 BX640586.12 1 36911 +
6814737 6864736 103 N 50000 contig no
6864737 6914031 104 FClick to retrieve finished assembled sequence in green bar: rank(s) 104 - 104 BX571669.7 1 49295 +
6914032 6964031 105 N 50000 contig no
6964032 7124861 106 FClick to retrieve finished assembled sequence in green bar: rank(s) 106 - 106 BX511020.10 1 160830 +
7124862 7174861 107 N 50000 contig no
7174862 7310479 108 FClick to retrieve finished assembled sequence in green bar: rank(s) 108 - 108 CT737209.18 1 135618 +
7310480 7360479 109 N 50000 contig no
7360480 7547193 110 FClick to retrieve finished assembled sequence in green bar: rank(s) 110 - 110 BX276122.23 1 186714 +
7547194 7597193 111 N 50000 contig no
7597194 7801022 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 112 - 112 BX248128.20 1 203829 +
7801023 7851022 113 N 50000 contig no
7851023 8041753 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 114 BX510909.19 1 190731 +
8041754 8091753 115 N 50000 contig no
8091754 8218892 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 116 FP340267.29 1 127139 +
8218893 8268892 117 N 50000 contig no
8268893 8363127 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 118 FQ312016.3 1 94235 +
8363128 8413127 119 N 50000 contig no
8413128 8535630 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 121 CU855916.11 1 122503 -
8535631 8592113 121 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 121 CU861458.10 46335 102817 +
8592114 8642113 122 N 50000 contig no
8642114 8814037 123 FClick to retrieve finished assembled sequence in green bar: rank(s) 123 - 123 CU182823.7 1 171924 +
8814038 8864037 124 N 50000 contig no
8864038 9014740 125 FClick to retrieve finished assembled sequence in green bar: rank(s) 125 - 125 CU138506.27 1 150703 +
9014741 9064740 126 N 50000 contig no
9064741 9211534 127 FClick to retrieve finished assembled sequence in green bar: rank(s) 127 - 127 CU280673.12 1 146794 +
9211535 9261534 128 N 50000 contig no
9261535 9481439 129 FClick to retrieve finished assembled sequence in green bar: rank(s) 129 - 129 CU457778.8 1 219905 +
9481440 9531439 130 N 50000 contig no
9531440 9709736 131 FClick to retrieve finished assembled sequence in green bar: rank(s) 131 - 131 CU182107.11 1 178297 +
9709737 9759736 132 N 50000 contig no
9759737 9923173 133 FClick to retrieve finished assembled sequence in green bar: rank(s) 133 - 133 CR391997.9 1 163437 +
9923174 9973173 134 N 50000 contig no
9973174 10127052 135 FClick to retrieve finished assembled sequence in green bar: rank(s) 135 - 135 CT025651.9 1 153879 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ZFOS-536A2
ctg10164
zF536A2
EPN details
Analysed
04-FEB-10
FP236251.7
finished
38821 ZFISHFOS 3' / 5'
38821 / 2001
- / -
1995
1.5
Identified
2014-04-09
agp2oracle
humpub
 
2 CH1073-151H15
ctg10164
zFD151H15
EPN details
Analysed
04-FEB-14
CU655832.15
finished
12726 CHORI1073        
  GAP (type-3) length unknown                  
4 CH1073-331A4
ctg10234
zFD331A4
EPN details
Analysed
17-JUL-08
CU693376.6
finished
8820 CHORI1073 3' / 5'
8820 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CH1073-380P6
ctg10234
zFD380P6
EPN details
Analysed
03-MAY-08
CU693450.3
finished
35617 CHORI1073 3' / 5'
35617 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
6 ZFOS-798D3
ctg10234
zF798D3
EPN details
Analysed
10-MAY-08
CU693439.4
finished
34992 ZFISHFOS        
  GAP (type-3) length unknown                  
8 CH1073-96F7
ctg10242
zFD96F7
EPN details
Analysed
19-AUG-08
CU627990.7
finished
34207 CHORI1073        
  GAP (type-3) length unknown                  
10 CH1073-413J6
ctg10279
zFD413J6
EPN details
Analysed
28-MAY-08
CU694263.3
finished
35552 CHORI1073        
  GAP (type-3) length unknown                  
12 ZFOS-412B2
ctg10330
zF412B2
EPN details
Analysed
05-DEC-08
CU565476.11
finished
38453 ZFISHFOS        
  GAP (type-3) length unknown                  
14 CH1073-272E2
ctg10332
zFD272E2
EPN details
Analysed
18-SEP-09
FP017150.5
finished
34495 CHORI1073        
  GAP (type-3) length unknown                  
16 CH1073-174O23
ctg10336
zFD174O23
EPN details
Analysed
20-MAR-08
CU481368.4
finished
32220 CHORI1073 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
17 CH1073-18O17
ctg10336
zFD18O17
EPN details
Analysed
02-SEP-09
CU929214.4
finished
24415 CHORI1073 3' / 3'
24415 / 31471
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
18 CH1073-476O20
ctg10336
zFD476O20
EPN details
Analysed
24-APR-08
CU651595.5
finished
33471 CHORI1073        
  GAP (type-3) length unknown                  
20 CH1073-469G4
ctg10406
zFD469G4
EPN details
Analysed
11-JUN-08
CU694219.4
finished
31777 CHORI1073        
  GAP (type-3) length unknown                  
22 CH1073-163N18
ctg10414
zFD163N18
EPN details
Analysed
11-JUL-09
CU929174.5
finished
36035 CHORI1073        
  GAP (type-3) length unknown                  
24 CH1073-442M7
ctg10504
zFD442M7
EPN details
Analysed
19-MAR-08
CU550713.6
finished
38724 CHORI1073        
  GAP (type-3) length unknown                  
26 CH1073-252I20
ctg10523
zFD252I20
EPN details
Analysed
07-DEC-07
CU571247.1
finished
36539 CHORI1073        
  GAP (type-3) length unknown                  
28 CH1073-306H23
ctg10543
zFD306H23
EPN details
Analysed
13-MAY-08
CU655842.5
finished
35025 CHORI1073 3' / 5'
35025 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
29 CH1073-234P20
ctg10543
zFD234P20
EPN details
Analysed
15-OCT-08
CU693480.10
finished
30158 CHORI1073 3' / 5'
30158 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
30 CH1073-239D21
ctg10543
zFD239D21
EPN details
Analysed
27-OCT-09
CU693444.5
finished
23122 CHORI1073        
  GAP (type-3) length unknown                  
32 CH73-302C13
ctg10552
zH302C13
EPN details
Analysed
16-DEC-08
CU855923.13
finished
81257 CHORI-73 5' / 3'
1 / 32268
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
33 CH1073-458F6
ctg10552
zFD458F6
EPN details
Analysed
01-OCT-08
CU693485.3
finished
34268 CHORI1073        
  GAP (type-3) length unknown                  
35 CH1073-104I3
ctg10558
zFD104I3
EPN details
Analysed
04-FEB-14
CU855947.7
finished
28375 CHORI1073 3' / 3'
28375 / 37573
- / -
2138
2.85
Identified
2014-04-09
find_overl...
humpub
 
36 ZFOS-254H3
ctg10558
zF254H3
EPN details
Analysed
20-FEB-09
CU929113.7
finished
39720 ZFISHFOS        
  GAP (type-3) length unknown                  
38 CH73-378B3
ctg10562
zH378B3
EPN details
Analysed
09-APR-09
CU856137.11
finished
101395 CHORI-73        
  GAP (type-3) length unknown                  
40 CH1073-369C19
ctg10576
zFD369C19
EPN details
Analysed
07-NOV-08
CU855914.9
finished
34262 CHORI1073        
  GAP (type-3) length unknown                  
42 CH73-369A7
ctg10586
zH369A7
EPN details
Analysed
06-JAN-10
CU861477.6
finished
60115 CHORI-73 5' / 3'
1 / 36287
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
43 ZFOS-295B12
ctg10586
zF295B12
EPN details
Analysed
08-APR-09
FP085610.4
finished
38287 ZFISHFOS        
  GAP (type-3) length unknown                  
45 CH1073-297E7
ctg10604
zFD297E7
EPN details
Analysed
25-NOV-09
CU914615.3
finished
20238 CHORI1073 3' / 3'
20238 / 31880
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
46 CH1073-222K14
ctg10604
zFD222K14
EPN details
Analysed
07-JUL-09
FP102116.1
finished
33880 CHORI1073        
  GAP (type-3) length unknown                  
48 CH1073-222I16
ctg10614
zFD222I16
EPN details
Analysed
12-NOV-08
CU928151.5
finished
32691 CHORI1073 3' / 5'
32691 / 2001
- / -
2000
0.05
Identified
2014-04-09
fetch_ncbi...
humpub
 
49 CH1073-470L8
ctg10614
zFD470L8
EPN details
Analysed
30-OCT-08
CU928134.5
finished
33143 CHORI1073        
  GAP (type-3) length unknown                  
51 ZFOS-2107B6
ctg10661
zF2107B6
EPN details
Indexed Manually Improved
07-OCT-13
FO704637.1
contiguous
41464 ZFISHFOS        
  GAP (type-3) length unknown                  
53 CH1073-153C21
ctg10670
zFD153C21
EPN details
Indexed Manually Improved
04-FEB-14
FO704920.1
contiguous
58434 CHORI1073        
  GAP (type-3) length unknown                  
55 CH1073-347L19
ctg10676
zFD347L19
EPN details
Indexed Manually Improved
01-FEB-13
FO538758.1
contiguous
43596 CHORI1073        
  GAP (type-3) length unknown                  
57 ZFOS-1191G7
ctg10705
zF1191G7
EPN details
Indexed Manually Improved
24-DEC-13
FO704795.1
contiguous
43137 ZFISHFOS        
  GAP (type-3) length unknown                  
59 CH1073-283D23
ctg10715
zFD283D23
EPN details
Indexed Manually Improved
31-JAN-14
FO704916.1
contiguous
32958 CHORI1073        
  GAP (type-3) length unknown                  
61 DKEY-36K5
ctg1235
zK36K5
EPN details
Analysed
17-JUN-05
BX005448.16
finished
137468 DanioKey        
  GAP (type-3) length unknown                  
63 DKEY-204O6
ctg1424
zK204O6
EPN details
Analysed
05-OCT-07
CR788286.12
finished
152860 DanioKey        
  GAP (type-3) length unknown                  
65 CH211-132N12
ctg1924
zC132N12
EPN details
Submitted to EMBL
12-JAN-09
BX942821.24
finished
159057 CHORI-211        
  GAP (type-3) length unknown                  
67 DKEYP-111A3
ctg2205
zKp111A3
EPN details
Analysed
10-MAR-04
BX649314.6
finished
170403 DanioKeypilot        
  GAP (type-3) length unknown                  
69 CH73-1M8
ctg236
zH1M8
EPN details
Analysed
27-FEB-08
CU468684.7
finished
133991 CHORI-73        
  GAP (type-3) length unknown                  
71 CH211-243G5
ctg2405
zC243G5
EPN details
Analysed
14-APR-07
CR762420.25
finished
164780 CHORI-211        
  GAP (type-3) length unknown                  
73 CH211-195E6
ctg2462
zC195E6
EPN details
Analysed
23-FEB-08
CR855265.41
finished
186565 CHORI-211        
  GAP (type-3) length unknown                  
75 CH211-101J4
ctg2478
zC101J4
EPN details
Analysed
11-JUN-08
CT583714.7
finished
147357 CHORI-211        
  GAP (type-3) length unknown                  
77 CH211-59G18
ctg2497
zC59G18
EPN details
Analysed
27-JUL-06
CR388003.10
finished
185489 CHORI-211        
  GAP (type-3) length unknown                  
79 CH211-242E19
ctg2612
zC242E19
EPN details
Analysed
31-AUG-06
CR847893.16
finished
165668 CHORI-211        
  GAP (type-3) length unknown                  
81 CH211-13F6
ctg2688
zC13F6
EPN details
Analysed
26-MAY-05
AL929028.29
finished
182372 CHORI-211        
  GAP (type-3) length unknown                  
83 DKEYP-90E1
ctg2689
zKp90E1
EPN details
Analysed
13-OCT-04
BX664622.10
finished
172445 DanioKeypilot        
  GAP (type-3) length unknown                  
85 CH211-32A20
ctg2784
zC32A20
EPN details
Analysed
24-MAR-10
BX927374.34
finished
163193 CHORI-211 5' / 3'
1 / 179825
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
86 DKEY-78I4
ctg2784
zK78I4
EPN details
Analysed
08-NOV-07
CR927215.14
finished
181825 DanioKey        
  GAP (type-3) length unknown                  
88 RP71-84E6
ctg2805
bZ84E6
EPN details
Analysed
26-AUG-05
BX465848.13
finished
179411 RPCI-71        
  GAP (type-3) length unknown                  
90 DKEY-19D22
ctg2934
zK19D22
EPN details
Analysed
03-MAY-07
CR792415.19
finished
233193 DanioKey        
  GAP (type-3) length unknown                  
92 CH73-359P4
ctg2970
zH359P4
EPN details
Analysed
26-SEP-09
FP236453.6
finished
12286 CHORI-73 5' / 3'
1 / 157175
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
93 DKEY-109D19
ctg2970
zK109D19
EPN details
Analysed
01-FEB-05
CR388176.8
finished
159175 DanioKey        
  GAP (type-3) length unknown                  
95 DKEY-228P6
ctg3089
zK228P6
EPN details
On hold
17-JAN-11
BX649254.17
unfinished
308995 DanioKey        
  GAP (type-3) length unknown                  
97 CH73-78M16
ctg3090
zH78M16
EPN details
Analysed
21-FEB-06
CR974440.6
finished
123466 CHORI-73        
98 DKEY-210K16
ctg3090
zK210K16
EPN details
On hold
17-JAN-11
CT737155.10
unfinished
288999 DanioKey        
  GAP (type-3) length unknown                  
100 CH211-15F21
ctg317
zC15F21
EPN details
Analysed
26-JUN-03
AL929029.7
finished
192579 CHORI-211        
  GAP (type-3) length unknown                  
102 DKEY-189P19
ctg3234
zK189P19
EPN details
Analysed
28-MAR-06
BX640586.12
finished
36911 DanioKey        
  GAP (type-3) length unknown                  
104 RP71-76M23
ctg3235
bZ76M23
EPN details
Analysed
19-APR-05
BX571669.7
finished
49295 RPCI-71        
  GAP (type-3) length unknown                  
106 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
Analysed
21-JUL-04
BX511020.10
finished
160830 RPCI-71        
  GAP (type-3) length unknown                  
108 DKEY-279K14
ctg3274
zK279K14
EPN details
Analysed
27-MAY-09
CT737209.18
finished
135618 DanioKey        
  GAP (type-3) length unknown                  
110 CH211-232H22
ctg349
zC232H22
EPN details
Analysed
02-JUN-04
BX276122.23
finished
186714 CHORI-211        
  GAP (type-3) length unknown                  
112 CH211-198G14
ctg386
zC198G14
EPN details
Submitted to EMBL
12-JAN-09
BX248128.20
finished
203829 CHORI-211        
  GAP (type-3) length unknown                  
114 DKEY-195E19
ctg470
zK195E19
EPN details
Submitted to EMBL
05-JUN-07
BX510909.19
finished
190731 DanioKey        
  GAP (type-3) length unknown                  
116 CH73-126L22
ctg48
zH126L22
EPN details
Analysed
25-AUG-10
FP340267.29
finished
127139 CHORI-73        
  GAP (type-3) length unknown                  
118 CH73-63A16
ctg52
zH63A16
EPN details
Analysed
06-OCT-10
FQ312016.3
finished
94235 CHORI-73        
  GAP (type-3) length unknown                  
120 CH73-44O18
ctg6100
zH44O18
EPN details
Analysed
25-NOV-08
CU855916.11
finished
122503 CHORI-73 5' / 5'
1 / 46335
- / -
46220
0.41
Identified
2014-04-09
fetch_ncbi...
humpub
 
121 CH73-99C6
ctg6100
zH99C6
EPN details
Analysed
22-NOV-08
CU861458.10
finished
102817 CHORI-73        
  GAP (type-3) length unknown                  
123 CH211-134C10
ctg6109
zC134C10
EPN details
Analysed
12-JUL-07
CU182823.7
finished
171924 CHORI-211        
  GAP (type-3) length unknown                  
125 CH211-153N7
ctg6126
zC153N7
EPN details
Analysed
14-JAN-09
CU138506.27
finished
150703 CHORI-211        
  GAP (type-3) length unknown                  
127 DKEY-188L18
ctg6301
zK188L18
EPN details
Analysed
02-NOV-07
CU280673.12
finished
146794 DanioKey        
  GAP (type-3) length unknown                  
129 DKEY-156C23
ctg6308
zK156C23
EPN details
Analysed
27-FEB-09
CU457778.8
finished
219905 DanioKey        
  GAP (type-3) length unknown                  
131 DKEY-260J10
ctg6325
zK260J10
EPN details
Analysed
02-NOV-07
CU182107.11
finished
178297 DanioKey        
  GAP (type-3) length unknown                  
133 CH211-236G14
ctg6693
zC236G14
EPN details
Analysed
08-FEB-06
CR391997.9
finished
163437 CHORI-211        
  GAP (type-3) length unknown                  
135 CH211-248K15
ctg8005
zC248K15
EPN details
Submitted to EMBL
12-JAN-09
CT025651.9
finished
153879 CHORI-211        

Statistics

Clone Summary

Number of gaps
59
Gap types
type-3
59
Total clones
76
Clone HTGS Phases
contiguous
5
finished
69
unfinished
2
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
74,358
Total finished length of fin clones w/ overlap
6,931,944
Total finished length of fin clones w/o overlap
6,857,586
Total overlap length of fin+unfin clones
74,358
Total finished length of fin+unfin clones w/ overlap
7,749,527
Total finished length of fin+unfin clones w/o overlap
7,675,169

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/9pcok3f4