ChromoView - clone / Assembly sequencing status

Zebrafish: Chromosome U (TPF updated: 2014-04-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ZFOS-536A2
ctg10164
zF536A2
EPN details
FP236251.7
finished
2 CH1073-151H15
ctg10164
zFD151H15
EPN details
CU655832.15
finished
  GAP (type-3) length unknown    
4 CH1073-331A4
ctg10234
zFD331A4
EPN details
CU693376.6
finished
5 CH1073-380P6
ctg10234
zFD380P6
EPN details
CU693450.3
finished
6 ZFOS-798D3
ctg10234
zF798D3
EPN details
CU693439.4
finished
  GAP (type-3) length unknown    
8 CH1073-96F7
ctg10242
zFD96F7
EPN details
CU627990.7
finished
  GAP (type-3) length unknown    
10 CH1073-413J6
ctg10279
zFD413J6
EPN details
CU694263.3
finished
  GAP (type-3) length unknown    
12 ZFOS-412B2
ctg10330
zF412B2
EPN details
CU565476.11
finished
  GAP (type-3) length unknown    
14 CH1073-272E2
ctg10332
zFD272E2
EPN details
FP017150.5
finished
  GAP (type-3) length unknown    
16 CH1073-163N18
ctg10414
zFD163N18
EPN details
CU929174.5
finished
  GAP (type-3) length unknown    
18 CH1073-442M7
ctg10504
zFD442M7
EPN details
CU550713.6
finished
  GAP (type-3) length unknown    
20 CH1073-252I20
ctg10523
zFD252I20
EPN details
CU571247.1
finished
  GAP (type-3) length unknown    
22 CH1073-306H23
ctg10543
zFD306H23
EPN details
CU655842.5
finished
23 CH1073-234P20
ctg10543
zFD234P20
EPN details
CU693480.10
finished
24 CH1073-239D21
ctg10543
zFD239D21
EPN details
CU693444.5
finished
  GAP (type-3) length unknown    
26 CH73-302C13
ctg10552
zH302C13
EPN details
CU855923.13
finished
27 CH1073-458F6
ctg10552
zFD458F6
EPN details
CU693485.3
finished
  GAP (type-3) length unknown    
29 CH73-378B3
ctg10562
zH378B3
EPN details
CU856137.11
finished
  GAP (type-3) length unknown    
31 CH1073-369C19
ctg10576
zFD369C19
EPN details
CU855914.9
finished
  GAP (type-3) length unknown    
33 CH73-369A7
ctg10586
zH369A7
EPN details
CU861477.6
finished
34 ZFOS-295B12
ctg10586
zF295B12
EPN details
FP085610.4
finished
  GAP (type-3) length unknown    
36 CH1073-297E7
ctg10604
zFD297E7
EPN details
CU914615.3
finished
37 CH1073-222K14
ctg10604
zFD222K14
EPN details
FP102116.1
finished
  GAP (type-3) length unknown    
39 CH1073-222I16
ctg10614
zFD222I16
EPN details
CU928151.5
finished
40 CH1073-470L8
ctg10614
zFD470L8
EPN details
CU928134.5
finished
  GAP (type-3) length unknown    
42 ZFOS-2107B6
ctg10661
zF2107B6
EPN details
FO704637.1
contiguous
  GAP (type-3) length unknown    
44 CH1073-153C21
ctg10670
zFD153C21
EPN details
FO704920.1
contiguous
  GAP (type-3) length unknown    
46 CH1073-347L19
ctg10676
zFD347L19
EPN details
FO538758.1
contiguous
  GAP (type-3) length unknown    
48 ZFOS-1191G7
ctg10705
zF1191G7
EPN details
FO704795.1
contiguous
  GAP (type-3) length unknown    
50 CH1073-283D23
ctg10715
zFD283D23
EPN details
FO704916.1
contiguous
  GAP (type-3) length unknown    
52 DKEY-36K5
ctg1235
zK36K5
EPN details
BX005448.16
finished
  GAP (type-3) length unknown    
54 DKEY-204O6
ctg1424
zK204O6
EPN details
CR788286.12
finished
  GAP (type-3) length unknown    
56 CH211-132N12
ctg1924
zC132N12
EPN details
BX942821.24
finished
  GAP (type-3) length unknown    
58 DKEYP-111A3
ctg2205
zKp111A3
EPN details
BX649314.6
finished
  GAP (type-3) length unknown    
60 CH73-1M8
ctg236
zH1M8
EPN details
CU468684.7
finished
  GAP (type-3) length unknown    
62 CH211-243G5
ctg2405
zC243G5
EPN details
CR762420.25
finished
  GAP (type-3) length unknown    
64 CH211-195E6
ctg2462
zC195E6
EPN details
CR855265.41
finished
  GAP (type-3) length unknown    
66 CH211-101J4
ctg2478
zC101J4
EPN details
CT583714.7
finished
  GAP (type-3) length unknown    
68 CH211-59G18
ctg2497
zC59G18
EPN details
CR388003.10
finished
  GAP (type-3) length unknown    
70 CH211-242E19
ctg2612
zC242E19
EPN details
CR847893.16
finished
  GAP (type-3) length unknown    
72 CH211-13F6
ctg2688
zC13F6
EPN details
AL929028.29
finished
  GAP (type-3) length unknown    
74 DKEYP-90E1
ctg2689
zKp90E1
EPN details
BX664622.10
finished
  GAP (type-3) length unknown    
76 CH211-32A20
ctg2784
zC32A20
EPN details
BX927374.34
finished
77 DKEY-78I4
ctg2784
zK78I4
EPN details
CR927215.14
finished
  GAP (type-3) length unknown    
79 RP71-84E6
ctg2805
bZ84E6
EPN details
BX465848.13
finished
  GAP (type-3) length unknown    
81 DKEY-19D22
ctg2934
zK19D22
EPN details
CR792415.19
finished
  GAP (type-3) length unknown    
83 CH73-359P4
ctg2970
zH359P4
EPN details
FP236453.6
finished
84 DKEY-109D19
ctg2970
zK109D19
EPN details
CR388176.8
finished
  GAP (type-3) length unknown    
86 DKEY-228P6
ctg3089
zK228P6
EPN details
BX649254.17
unfinished
  GAP (type-3) length unknown    
88 CH73-78M16
ctg3090
zH78M16
EPN details
CR974440.6
finished
89 DKEY-210K16
ctg3090
zK210K16
EPN details
CT737155.10
unfinished
  GAP (type-3) length unknown    
91 CH211-15F21
ctg317
zC15F21
EPN details
AL929029.7
finished
  GAP (type-3) length unknown    
93 DKEY-189P19
ctg3234
zK189P19
EPN details
BX640586.12
finished
  GAP (type-3) length unknown    
95 RP71-76M23
ctg3235
bZ76M23
EPN details
BX571669.7
finished
  GAP (type-3) length unknown    
97 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
BX511020.10
finished
  GAP (type-3) length unknown    
99 DKEY-279K14
ctg3274
zK279K14
EPN details
CT737209.18
finished
  GAP (type-3) length unknown    
101 CH211-232H22
ctg349
zC232H22
EPN details
BX276122.23
finished
  GAP (type-3) length unknown    
103 CH211-198G14
ctg386
zC198G14
EPN details
BX248128.20
finished
  GAP (type-3) length unknown    
105 DKEY-195E19
ctg470
zK195E19
EPN details
BX510909.19
finished
  GAP (type-3) length unknown    
107 CH73-126L22
ctg48
zH126L22
EPN details
FP340267.29
finished
  GAP (type-3) length unknown    
109 CH73-63A16
ctg52
zH63A16
EPN details
FQ312016.3
finished
  GAP (type-3) length unknown    
111 CH73-44O18
ctg6100
zH44O18
EPN details
CU855916.11
finished
112 CH73-99C6
ctg6100
zH99C6
EPN details
CU861458.10
finished
  GAP (type-3) length unknown    
114 CH211-134C10
ctg6109
zC134C10
EPN details
CU182823.7
finished
  GAP (type-3) length unknown    
116 CH211-153N7
ctg6126
zC153N7
EPN details
CU138506.27
finished
  GAP (type-3) length unknown    
118 DKEY-188L18
ctg6301
zK188L18
EPN details
CU280673.12
finished
  GAP (type-3) length unknown    
120 DKEY-156C23
ctg6308
zK156C23
EPN details
CU457778.8
finished
  GAP (type-3) length unknown    
122 DKEY-260J10
ctg6325
zK260J10
EPN details
CU182107.11
finished
  GAP (type-3) length unknown    
124 CH211-236G14
ctg6693
zC236G14
EPN details
CR391997.9
finished
  GAP (type-3) length unknown    
126 CH211-248K15
ctg8005
zC248K15
EPN details
CT025651.9
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 38821 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP236251.7 1 38821 +
38822 49547 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU655832.15 2001 12726 +
49548 99547 3 N 50000 contig no
99548 108367 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CU693376.6 1 8820 +
108368 141984 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CU693450.3 2001 35617 +
141985 174976 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 CU693439.4 2001 34992 +
174977 224976 7 N 50000 contig no
224977 259183 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 CU627990.7 1 34207 +
259184 309183 9 N 50000 contig no
309184 344735 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CU694263.3 1 35552 +
344736 394735 11 N 50000 contig no
394736 433188 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 CU565476.11 1 38453 +
433189 483188 13 N 50000 contig no
483189 517683 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 FP017150.5 1 34495 +
517684 567683 15 N 50000 contig no
567684 603718 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CU929174.5 1 36035 +
603719 653718 17 N 50000 contig no
653719 692442 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 CU550713.6 1 38724 +
692443 742442 19 N 50000 contig no
742443 778981 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 CU571247.1 1 36539 +
778982 828981 21 N 50000 contig no
828982 864006 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CU655842.5 1 35025 +
864007 892164 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CU693480.10 2001 30158 +
892165 913286 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 24 CU693444.5 2001 23122 +
913287 963286 25 N 50000 contig no
963287 1044543 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CU855923.13 1 81257 -
1044544 1076811 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CU693485.3 1 32268 -
1076812 1126811 28 N 50000 contig no
1126812 1228206 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CU856137.11 1 101395 +
1228207 1278206 30 N 50000 contig no
1278207 1312468 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CU855914.9 1 34262 +
1312469 1362468 32 N 50000 contig no
1362469 1422583 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 34 CU861477.6 1 60115 -
1422584 1458870 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 34 FP085610.4 1 36287 -
1458871 1508870 35 N 50000 contig no
1508871 1529108 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 CU914615.3 1 20238 +
1529109 1560988 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 37 FP102116.1 1 31880 -
1560989 1610988 38 N 50000 contig no
1610989 1643679 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CU928151.5 1 32691 +
1643680 1674822 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 40 CU928134.5 2001 33143 +
1674823 1724822 41 N 50000 contig no
1724823 1766286 42 A FO704637.1 1 41464 +
1766287 1816286 43 N 50000 contig no
1816287 1874720 44 A FO704920.1 1 58434 +
1874721 1924720 45 N 50000 contig no
1924721 1968316 46 A FO538758.1 1 43596 +
1968317 2018316 47 N 50000 contig no
2018317 2061453 48 A FO704795.1 1 43137 +
2061454 2111453 49 N 50000 contig no
2111454 2144411 50 A FO704916.1 1 32958 +
2144412 2194411 51 N 50000 contig no
2194412 2331879 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 BX005448.16 1 137468 +
2331880 2381879 53 N 50000 contig no
2381880 2534739 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CR788286.12 1 152860 +
2534740 2584739 55 N 50000 contig no
2584740 2743796 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 56 BX942821.24 1 159057 +
2743797 2793796 57 N 50000 contig no
2793797 2964199 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 58 - 58 BX649314.6 1 170403 +
2964200 3014199 59 N 50000 contig no
3014200 3148190 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 CU468684.7 1 133991 +
3148191 3198190 61 N 50000 contig no
3198191 3362970 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 CR762420.25 1 164780 +
3362971 3412970 63 N 50000 contig no
3412971 3599535 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 CR855265.41 1 186565 +
3599536 3649535 65 N 50000 contig no
3649536 3796892 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 CT583714.7 1 147357 +
3796893 3846892 67 N 50000 contig no
3846893 4032381 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 68 CR388003.10 1 185489 +
4032382 4082381 69 N 50000 contig no
4082382 4248049 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 CR847893.16 1 165668 +
4248050 4298049 71 N 50000 contig no
4298050 4480421 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 72 AL929028.29 1 182372 +
4480422 4530421 73 N 50000 contig no
4530422 4702866 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 74 - 74 BX664622.10 1 172445 +
4702867 4752866 75 N 50000 contig no
4752867 4916059 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 BX927374.34 1 163193 -
4916060 5095884 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 CR927215.14 1 179825 -
5095885 5145884 78 N 50000 contig no
5145885 5325295 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 BX465848.13 1 179411 +
5325296 5375295 80 N 50000 contig no
5375296 5608488 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 CR792415.19 1 233193 +
5608489 5658488 82 N 50000 contig no
5658489 5670774 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 84 FP236453.6 1 12286 -
5670775 5827949 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 84 CR388176.8 1 157175 -
5827950 5877949 85 N 50000 contig no
5877950 5927949 86 N 50000 clone no
5927950 5977949 87 N 50000 contig no
5977950 6101415 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 88 CR974440.6 1 123466 +
6101416 6151415 89 N 50000 clone no
6151416 6201415 90 N 50000 contig no
6201416 6393994 91 FClick to retrieve finished assembled sequence in green bar: rank(s) 91 - 91 AL929029.7 1 192579 +
6393995 6443994 92 N 50000 contig no
6443995 6480905 93 FClick to retrieve finished assembled sequence in green bar: rank(s) 93 - 93 BX640586.12 1 36911 +
6480906 6530905 94 N 50000 contig no
6530906 6580200 95 FClick to retrieve finished assembled sequence in green bar: rank(s) 95 - 95 BX571669.7 1 49295 +
6580201 6630200 96 N 50000 contig no
6630201 6791030 97 FClick to retrieve finished assembled sequence in green bar: rank(s) 97 - 97 BX511020.10 1 160830 +
6791031 6841030 98 N 50000 contig no
6841031 6976648 99 FClick to retrieve finished assembled sequence in green bar: rank(s) 99 - 99 CT737209.18 1 135618 +
6976649 7026648 100 N 50000 contig no
7026649 7213362 101 FClick to retrieve finished assembled sequence in green bar: rank(s) 101 - 101 BX276122.23 1 186714 +
7213363 7263362 102 N 50000 contig no
7263363 7467191 103 FClick to retrieve finished assembled sequence in green bar: rank(s) 103 - 103 BX248128.20 1 203829 +
7467192 7517191 104 N 50000 contig no
7517192 7707922 105 FClick to retrieve finished assembled sequence in green bar: rank(s) 105 - 105 BX510909.19 1 190731 +
7707923 7757922 106 N 50000 contig no
7757923 7885061 107 FClick to retrieve finished assembled sequence in green bar: rank(s) 107 - 107 FP340267.29 1 127139 +
7885062 7935061 108 N 50000 contig no
7935062 8029296 109 FClick to retrieve finished assembled sequence in green bar: rank(s) 109 - 109 FQ312016.3 1 94235 +
8029297 8079296 110 N 50000 contig no
8079297 8201799 111 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 112 CU855916.11 1 122503 -
8201800 8258282 112 FClick to retrieve finished assembled sequence in green bar: rank(s) 111 - 112 CU861458.10 46335 102817 +
8258283 8308282 113 N 50000 contig no
8308283 8480206 114 FClick to retrieve finished assembled sequence in green bar: rank(s) 114 - 114 CU182823.7 1 171924 +
8480207 8530206 115 N 50000 contig no
8530207 8680909 116 FClick to retrieve finished assembled sequence in green bar: rank(s) 116 - 116 CU138506.27 1 150703 +
8680910 8730909 117 N 50000 contig no
8730910 8877703 118 FClick to retrieve finished assembled sequence in green bar: rank(s) 118 - 118 CU280673.12 1 146794 +
8877704 8927703 119 N 50000 contig no
8927704 9147608 120 FClick to retrieve finished assembled sequence in green bar: rank(s) 120 - 120 CU457778.8 1 219905 +
9147609 9197608 121 N 50000 contig no
9197609 9375905 122 FClick to retrieve finished assembled sequence in green bar: rank(s) 122 - 122 CU182107.11 1 178297 +
9375906 9425905 123 N 50000 contig no
9425906 9589342 124 FClick to retrieve finished assembled sequence in green bar: rank(s) 124 - 124 CR391997.9 1 163437 +
9589343 9639342 125 N 50000 contig no
9639343 9793221 126 FClick to retrieve finished assembled sequence in green bar: rank(s) 126 - 126 CT025651.9 1 153879 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ZFOS-536A2
ctg10164
zF536A2
EPN details
Analysed
04-FEB-10
FP236251.7
finished
38821 ZFISHFOS 3' / 5'
38821 / 2001
- / -
1995
1.5
Identified
2014-04-09
agp2oracle
humpub
 
2 CH1073-151H15
ctg10164
zFD151H15
EPN details
Analysed
04-FEB-14
CU655832.15
finished
12726 CHORI1073        
  GAP (type-3) length unknown                  
4 CH1073-331A4
ctg10234
zFD331A4
EPN details
Analysed
17-JUL-08
CU693376.6
finished
8820 CHORI1073 3' / 5'
8820 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CH1073-380P6
ctg10234
zFD380P6
EPN details
Analysed
03-MAY-08
CU693450.3
finished
35617 CHORI1073 3' / 5'
35617 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
6 ZFOS-798D3
ctg10234
zF798D3
EPN details
Analysed
10-MAY-08
CU693439.4
finished
34992 ZFISHFOS        
  GAP (type-3) length unknown                  
8 CH1073-96F7
ctg10242
zFD96F7
EPN details
Analysed
19-AUG-08
CU627990.7
finished
34207 CHORI1073        
  GAP (type-3) length unknown                  
10 CH1073-413J6
ctg10279
zFD413J6
EPN details
Analysed
28-MAY-08
CU694263.3
finished
35552 CHORI1073        
  GAP (type-3) length unknown                  
12 ZFOS-412B2
ctg10330
zF412B2
EPN details
Analysed
05-DEC-08
CU565476.11
finished
38453 ZFISHFOS        
  GAP (type-3) length unknown                  
14 CH1073-272E2
ctg10332
zFD272E2
EPN details
Analysed
18-SEP-09
FP017150.5
finished
34495 CHORI1073        
  GAP (type-3) length unknown                  
16 CH1073-163N18
ctg10414
zFD163N18
EPN details
Analysed
11-JUL-09
CU929174.5
finished
36035 CHORI1073        
  GAP (type-3) length unknown                  
18 CH1073-442M7
ctg10504
zFD442M7
EPN details
Analysed
19-MAR-08
CU550713.6
finished
38724 CHORI1073        
  GAP (type-3) length unknown                  
20 CH1073-252I20
ctg10523
zFD252I20
EPN details
Analysed
07-DEC-07
CU571247.1
finished
36539 CHORI1073        
  GAP (type-3) length unknown                  
22 CH1073-306H23
ctg10543
zFD306H23
EPN details
Analysed
13-MAY-08
CU655842.5
finished
35025 CHORI1073 3' / 5'
35025 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
23 CH1073-234P20
ctg10543
zFD234P20
EPN details
Analysed
15-OCT-08
CU693480.10
finished
30158 CHORI1073 3' / 5'
30158 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
24 CH1073-239D21
ctg10543
zFD239D21
EPN details
Analysed
27-OCT-09
CU693444.5
finished
23122 CHORI1073        
  GAP (type-3) length unknown                  
26 CH73-302C13
ctg10552
zH302C13
EPN details
Analysed
16-DEC-08
CU855923.13
finished
81257 CHORI-73 5' / 3'
1 / 32268
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
27 CH1073-458F6
ctg10552
zFD458F6
EPN details
Analysed
01-OCT-08
CU693485.3
finished
34268 CHORI1073        
  GAP (type-3) length unknown                  
29 CH73-378B3
ctg10562
zH378B3
EPN details
Analysed
09-APR-09
CU856137.11
finished
101395 CHORI-73        
  GAP (type-3) length unknown                  
31 CH1073-369C19
ctg10576
zFD369C19
EPN details
Analysed
07-NOV-08
CU855914.9
finished
34262 CHORI1073        
  GAP (type-3) length unknown                  
33 CH73-369A7
ctg10586
zH369A7
EPN details
Analysed
06-JAN-10
CU861477.6
finished
60115 CHORI-73 5' / 3'
1 / 36287
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
34 ZFOS-295B12
ctg10586
zF295B12
EPN details
Analysed
08-APR-09
FP085610.4
finished
38287 ZFISHFOS        
  GAP (type-3) length unknown                  
36 CH1073-297E7
ctg10604
zFD297E7
EPN details
Analysed
25-NOV-09
CU914615.3
finished
20238 CHORI1073 3' / 3'
20238 / 31880
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
37 CH1073-222K14
ctg10604
zFD222K14
EPN details
Analysed
07-JUL-09
FP102116.1
finished
33880 CHORI1073        
  GAP (type-3) length unknown                  
39 CH1073-222I16
ctg10614
zFD222I16
EPN details
Analysed
12-NOV-08
CU928151.5
finished
32691 CHORI1073 3' / 5'
32691 / 2001
- / -
2000
0.05
Identified
2014-04-09
fetch_ncbi...
humpub
 
40 CH1073-470L8
ctg10614
zFD470L8
EPN details
Analysed
30-OCT-08
CU928134.5
finished
33143 CHORI1073        
  GAP (type-3) length unknown                  
42 ZFOS-2107B6
ctg10661
zF2107B6
EPN details
Indexed Manually Improved
07-OCT-13
FO704637.1
contiguous
41464 ZFISHFOS        
  GAP (type-3) length unknown                  
44 CH1073-153C21
ctg10670
zFD153C21
EPN details
Indexed Manually Improved
04-FEB-14
FO704920.1
contiguous
58434 CHORI1073        
  GAP (type-3) length unknown                  
46 CH1073-347L19
ctg10676
zFD347L19
EPN details
Indexed Manually Improved
01-FEB-13
FO538758.1
contiguous
43596 CHORI1073        
  GAP (type-3) length unknown                  
48 ZFOS-1191G7
ctg10705
zF1191G7
EPN details
Indexed Manually Improved
24-DEC-13
FO704795.1
contiguous
43137 ZFISHFOS        
  GAP (type-3) length unknown                  
50 CH1073-283D23
ctg10715
zFD283D23
EPN details
Indexed Manually Improved
31-JAN-14
FO704916.1
contiguous
32958 CHORI1073        
  GAP (type-3) length unknown                  
52 DKEY-36K5
ctg1235
zK36K5
EPN details
Analysed
17-JUN-05
BX005448.16
finished
137468 DanioKey        
  GAP (type-3) length unknown                  
54 DKEY-204O6
ctg1424
zK204O6
EPN details
Analysed
05-OCT-07
CR788286.12
finished
152860 DanioKey        
  GAP (type-3) length unknown                  
56 CH211-132N12
ctg1924
zC132N12
EPN details
Submitted to EMBL
12-JAN-09
BX942821.24
finished
159057 CHORI-211        
  GAP (type-3) length unknown                  
58 DKEYP-111A3
ctg2205
zKp111A3
EPN details
Analysed
10-MAR-04
BX649314.6
finished
170403 DanioKeypilot        
  GAP (type-3) length unknown                  
60 CH73-1M8
ctg236
zH1M8
EPN details
Analysed
27-FEB-08
CU468684.7
finished
133991 CHORI-73        
  GAP (type-3) length unknown                  
62 CH211-243G5
ctg2405
zC243G5
EPN details
Analysed
14-APR-07
CR762420.25
finished
164780 CHORI-211        
  GAP (type-3) length unknown                  
64 CH211-195E6
ctg2462
zC195E6
EPN details
Analysed
23-FEB-08
CR855265.41
finished
186565 CHORI-211        
  GAP (type-3) length unknown                  
66 CH211-101J4
ctg2478
zC101J4
EPN details
Analysed
11-JUN-08
CT583714.7
finished
147357 CHORI-211        
  GAP (type-3) length unknown                  
68 CH211-59G18
ctg2497
zC59G18
EPN details
Analysed
27-JUL-06
CR388003.10
finished
185489 CHORI-211        
  GAP (type-3) length unknown                  
70 CH211-242E19
ctg2612
zC242E19
EPN details
Analysed
31-AUG-06
CR847893.16
finished
165668 CHORI-211        
  GAP (type-3) length unknown                  
72 CH211-13F6
ctg2688
zC13F6
EPN details
Analysed
26-MAY-05
AL929028.29
finished
182372 CHORI-211        
  GAP (type-3) length unknown                  
74 DKEYP-90E1
ctg2689
zKp90E1
EPN details
Analysed
13-OCT-04
BX664622.10
finished
172445 DanioKeypilot        
  GAP (type-3) length unknown                  
76 CH211-32A20
ctg2784
zC32A20
EPN details
Analysed
24-MAR-10
BX927374.34
finished
163193 CHORI-211 5' / 3'
1 / 179825
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
77 DKEY-78I4
ctg2784
zK78I4
EPN details
Analysed
08-NOV-07
CR927215.14
finished
181825 DanioKey        
  GAP (type-3) length unknown                  
79 RP71-84E6
ctg2805
bZ84E6
EPN details
Analysed
26-AUG-05
BX465848.13
finished
179411 RPCI-71        
  GAP (type-3) length unknown                  
81 DKEY-19D22
ctg2934
zK19D22
EPN details
Analysed
03-MAY-07
CR792415.19
finished
233193 DanioKey        
  GAP (type-3) length unknown                  
83 CH73-359P4
ctg2970
zH359P4
EPN details
Analysed
26-SEP-09
FP236453.6
finished
12286 CHORI-73 5' / 3'
1 / 157175
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
84 DKEY-109D19
ctg2970
zK109D19
EPN details
Analysed
01-FEB-05
CR388176.8
finished
159175 DanioKey        
  GAP (type-3) length unknown                  
86 DKEY-228P6
ctg3089
zK228P6
EPN details
On hold
17-JAN-11
BX649254.17
unfinished
308995 DanioKey        
  GAP (type-3) length unknown                  
88 CH73-78M16
ctg3090
zH78M16
EPN details
Analysed
21-FEB-06
CR974440.6
finished
123466 CHORI-73        
89 DKEY-210K16
ctg3090
zK210K16
EPN details
On hold
17-JAN-11
CT737155.10
unfinished
288999 DanioKey        
  GAP (type-3) length unknown                  
91 CH211-15F21
ctg317
zC15F21
EPN details
Analysed
26-JUN-03
AL929029.7
finished
192579 CHORI-211        
  GAP (type-3) length unknown                  
93 DKEY-189P19
ctg3234
zK189P19
EPN details
Analysed
28-MAR-06
BX640586.12
finished
36911 DanioKey        
  GAP (type-3) length unknown                  
95 RP71-76M23
ctg3235
bZ76M23
EPN details
Analysed
19-APR-05
BX571669.7
finished
49295 RPCI-71        
  GAP (type-3) length unknown                  
97 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
Analysed
21-JUL-04
BX511020.10
finished
160830 RPCI-71        
  GAP (type-3) length unknown                  
99 DKEY-279K14
ctg3274
zK279K14
EPN details
Analysed
27-MAY-09
CT737209.18
finished
135618 DanioKey        
  GAP (type-3) length unknown                  
101 CH211-232H22
ctg349
zC232H22
EPN details
Analysed
02-JUN-04
BX276122.23
finished
186714 CHORI-211        
  GAP (type-3) length unknown                  
103 CH211-198G14
ctg386
zC198G14
EPN details
Submitted to EMBL
12-JAN-09
BX248128.20
finished
203829 CHORI-211        
  GAP (type-3) length unknown                  
105 DKEY-195E19
ctg470
zK195E19
EPN details
Submitted to EMBL
05-JUN-07
BX510909.19
finished
190731 DanioKey        
  GAP (type-3) length unknown                  
107 CH73-126L22
ctg48
zH126L22
EPN details
Analysed
25-AUG-10
FP340267.29
finished
127139 CHORI-73        
  GAP (type-3) length unknown                  
109 CH73-63A16
ctg52
zH63A16
EPN details
Analysed
06-OCT-10
FQ312016.3
finished
94235 CHORI-73        
  GAP (type-3) length unknown                  
111 CH73-44O18
ctg6100
zH44O18
EPN details
Analysed
25-NOV-08
CU855916.11
finished
122503 CHORI-73 5' / 5'
1 / 46335
- / -
46220
0.41
Identified
2014-04-09
fetch_ncbi...
humpub
 
112 CH73-99C6
ctg6100
zH99C6
EPN details
Analysed
22-NOV-08
CU861458.10
finished
102817 CHORI-73        
  GAP (type-3) length unknown                  
114 CH211-134C10
ctg6109
zC134C10
EPN details
Analysed
12-JUL-07
CU182823.7
finished
171924 CHORI-211        
  GAP (type-3) length unknown                  
116 CH211-153N7
ctg6126
zC153N7
EPN details
Analysed
14-JAN-09
CU138506.27
finished
150703 CHORI-211        
  GAP (type-3) length unknown                  
118 DKEY-188L18
ctg6301
zK188L18
EPN details
Analysed
02-NOV-07
CU280673.12
finished
146794 DanioKey        
  GAP (type-3) length unknown                  
120 DKEY-156C23
ctg6308
zK156C23
EPN details
Analysed
27-FEB-09
CU457778.8
finished
219905 DanioKey        
  GAP (type-3) length unknown                  
122 DKEY-260J10
ctg6325
zK260J10
EPN details
Analysed
02-NOV-07
CU182107.11
finished
178297 DanioKey        
  GAP (type-3) length unknown                  
124 CH211-236G14
ctg6693
zC236G14
EPN details
Analysed
08-FEB-06
CR391997.9
finished
163437 CHORI-211        
  GAP (type-3) length unknown                  
126 CH211-248K15
ctg8005
zC248K15
EPN details
Submitted to EMBL
12-JAN-09
CT025651.9
finished
153879 CHORI-211        

Statistics

Clone Summary

Number of gaps
56
Gap types
type-3
56
Total clones
70
Clone HTGS Phases
contiguous
5
finished
63
unfinished
2
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
68,220
Total finished length of fin clones w/ overlap
6,741,966
Total finished length of fin clones w/o overlap
6,673,746
Total overlap length of fin+unfin clones
68,220
Total finished length of fin+unfin clones w/ overlap
7,559,549
Total finished length of fin+unfin clones w/o overlap
7,491,329

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/9pcok3f4