ChromoView - clone / Assembly sequencing status

Zebrafish: Chromosome U (TPF updated: 2014-10-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-413J6
ctg10279
zFD413J6
EPN details
CU694263.3
finished
  GAP (type-3) length unknown    
3 CH1073-442M7
ctg10504
zFD442M7
EPN details
CU550713.6
finished
  GAP (type-3) length unknown    
5 CH1073-297E7
ctg10604
zFD297E7
EPN details
CU914615.3
finished
6 CH1073-222K14
ctg10604
zFD222K14
EPN details
FP102116.1
finished
  GAP (type-3) length unknown    
8 DKEY-36K5
ctg1235
zK36K5
EPN details
BX005448.16
finished
  GAP (type-3) length unknown    
10 DKEY-204O6
ctg1424
zK204O6
EPN details
CR788286.12
finished
  GAP (type-3) length unknown    
12 CH211-132N12
ctg1924
zC132N12
EPN details
BX942821.24
finished
  GAP (type-3) length unknown    
14 CH211-243G5
ctg2405
zC243G5
EPN details
CR762420.25
finished
  GAP (type-3) length unknown    
16 CH211-101J4
ctg2478
zC101J4
EPN details
CT583714.7
finished
  GAP (type-3) length unknown    
18 CH211-242E19
ctg2612
zC242E19
EPN details
CR847893.16
finished
  GAP (type-3) length unknown    
20 CH211-13F6
ctg2688
zC13F6
EPN details
AL929028.29
finished
  GAP (type-3) length unknown    
22 DKEYP-90E1
ctg2689
zKp90E1
EPN details
BX664622.10
finished
  GAP (type-3) length unknown    
24 CH211-32A20
ctg2784
zC32A20
EPN details
BX927374.34
finished
25 DKEY-78I4
ctg2784
zK78I4
EPN details
CR927215.14
finished
  GAP (type-3) length unknown    
27 RP71-84E6
ctg2805
bZ84E6
EPN details
BX465848.13
finished
  GAP (type-3) length unknown    
29 DKEY-19D22
ctg2934
zK19D22
EPN details
CR792415.19
finished
  GAP (type-3) length unknown    
31 DKEY-189P19
ctg3234
zK189P19
EPN details
BX640586.12
finished
  GAP (type-3) length unknown    
33 RP71-76M23
ctg3235
bZ76M23
EPN details
BX571669.7
finished
  GAP (type-3) length unknown    
35 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
BX511020.10
finished
  GAP (type-3) length unknown    
37 CH211-232H22
ctg349
zC232H22
EPN details
BX276122.23
finished
  GAP (type-3) length unknown    
39 CH211-198G14
ctg386
zC198G14
EPN details
BX248128.20
finished
  GAP (type-3) length unknown    
41 DKEY-195E19
ctg470
zK195E19
EPN details
BX510909.19
finished
  GAP (type-3) length unknown    
43 CH211-134C10
ctg6109
zC134C10
EPN details
CU182823.7
finished
  GAP (type-3) length unknown    
45 DKEY-156C23
ctg6308
zK156C23
EPN details
CU457778.8
finished
  GAP (type-3) length unknown    
47 DKEY-260J10
ctg6325
zK260J10
EPN details
CU182107.11
finished
  GAP (type-3) length unknown    
49 CH211-236G14
ctg6693
zC236G14
EPN details
CR391997.9
finished
  GAP (type-3) length unknown    
51 CH211-248K15
ctg8005
zC248K15
EPN details
CT025651.9
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 35552 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU694263.3 1 35552 +
35553 85552 2 N 50000 contig no
85553 124276 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CU550713.6 1 38724 +
124277 174276 4 N 50000 contig no
174277 194514 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 CU914615.3 1 20238 +
194515 226394 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 FP102116.1 1 31880 -
226395 276394 7 N 50000 contig no
276395 413862 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 BX005448.16 1 137468 +
413863 463862 9 N 50000 contig no
463863 616722 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 CR788286.12 1 152860 +
616723 666722 11 N 50000 contig no
666723 825779 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 BX942821.24 1 159057 +
825780 875779 13 N 50000 contig no
875780 1040559 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CR762420.25 1 164780 +
1040560 1090559 15 N 50000 contig no
1090560 1237916 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CT583714.7 1 147357 +
1237917 1287916 17 N 50000 contig no
1287917 1453584 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 CR847893.16 1 165668 +
1453585 1503584 19 N 50000 contig no
1503585 1685956 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AL929028.29 1 182372 +
1685957 1735956 21 N 50000 contig no
1735957 1908401 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 BX664622.10 1 172445 +
1908402 1958401 23 N 50000 contig no
1958402 2121594 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 BX927374.34 1 163193 -
2121595 2301419 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 25 CR927215.14 1 179825 -
2301420 2351419 26 N 50000 contig no
2351420 2530830 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 BX465848.13 1 179411 +
2530831 2580830 28 N 50000 contig no
2580831 2814023 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CR792415.19 1 233193 +
2814024 2864023 30 N 50000 contig no
2864024 2900934 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 BX640586.12 1 36911 +
2900935 2950934 32 N 50000 contig no
2950935 3000229 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 BX571669.7 1 49295 +
3000230 3050229 34 N 50000 contig no
3050230 3211059 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 BX511020.10 1 160830 +
3211060 3261059 36 N 50000 contig no
3261060 3447773 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 BX276122.23 1 186714 +
3447774 3497773 38 N 50000 contig no
3497774 3701602 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 BX248128.20 1 203829 +
3701603 3751602 40 N 50000 contig no
3751603 3942333 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 BX510909.19 1 190731 +
3942334 3992333 42 N 50000 contig no
3992334 4164257 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 CU182823.7 1 171924 +
4164258 4214257 44 N 50000 contig no
4214258 4434162 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CU457778.8 1 219905 +
4434163 4484162 46 N 50000 contig no
4484163 4662459 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CU182107.11 1 178297 +
4662460 4712459 48 N 50000 contig no
4712460 4875896 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 CR391997.9 1 163437 +
4875897 4925896 50 N 50000 contig no
4925897 5079775 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 51 CT025651.9 1 153879 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-413J6
ctg10279
zFD413J6
EPN details
Analysed
28-MAY-08
CU694263.3
finished
35552 CHORI1073        
  GAP (type-3) length unknown                  
3 CH1073-442M7
ctg10504
zFD442M7
EPN details
Analysed
19-MAR-08
CU550713.6
finished
38724 CHORI1073        
  GAP (type-3) length unknown                  
5 CH1073-297E7
ctg10604
zFD297E7
EPN details
Analysed
25-NOV-09
CU914615.3
finished
20238 CHORI1073 3' / 3'
20238 / 31880
- / -
2000
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
6 CH1073-222K14
ctg10604
zFD222K14
EPN details
Analysed
07-JUL-09
FP102116.1
finished
33880 CHORI1073        
  GAP (type-3) length unknown                  
8 DKEY-36K5
ctg1235
zK36K5
EPN details
Analysed
17-JUN-05
BX005448.16
finished
137468 DanioKey        
  GAP (type-3) length unknown                  
10 DKEY-204O6
ctg1424
zK204O6
EPN details
Analysed
05-OCT-07
CR788286.12
finished
152860 DanioKey        
  GAP (type-3) length unknown                  
12 CH211-132N12
ctg1924
zC132N12
EPN details
Submitted to EMBL
12-JAN-09
BX942821.24
finished
159057 CHORI-211        
  GAP (type-3) length unknown                  
14 CH211-243G5
ctg2405
zC243G5
EPN details
Analysed
14-APR-07
CR762420.25
finished
164780 CHORI-211        
  GAP (type-3) length unknown                  
16 CH211-101J4
ctg2478
zC101J4
EPN details
Analysed
11-JUN-08
CT583714.7
finished
147357 CHORI-211        
  GAP (type-3) length unknown                  
18 CH211-242E19
ctg2612
zC242E19
EPN details
Analysed
31-AUG-06
CR847893.16
finished
165668 CHORI-211        
  GAP (type-3) length unknown                  
20 CH211-13F6
ctg2688
zC13F6
EPN details
Analysed
26-MAY-05
AL929028.29
finished
182372 CHORI-211        
  GAP (type-3) length unknown                  
22 DKEYP-90E1
ctg2689
zKp90E1
EPN details
Analysed
13-OCT-04
BX664622.10
finished
172445 DanioKeypilot        
  GAP (type-3) length unknown                  
24 CH211-32A20
ctg2784
zC32A20
EPN details
Analysed
24-MAR-10
BX927374.34
finished
163193 CHORI-211 5' / 3'
1 / 179825
- / -
2000
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
25 DKEY-78I4
ctg2784
zK78I4
EPN details
Analysed
08-NOV-07
CR927215.14
finished
181825 DanioKey        
  GAP (type-3) length unknown                  
27 RP71-84E6
ctg2805
bZ84E6
EPN details
Analysed
26-AUG-05
BX465848.13
finished
179411 RPCI-71        
  GAP (type-3) length unknown                  
29 DKEY-19D22
ctg2934
zK19D22
EPN details
Analysed
03-MAY-07
CR792415.19
finished
233193 DanioKey        
  GAP (type-3) length unknown                  
31 DKEY-189P19
ctg3234
zK189P19
EPN details
Analysed
28-MAR-06
BX640586.12
finished
36911 DanioKey        
  GAP (type-3) length unknown                  
33 RP71-76M23
ctg3235
bZ76M23
EPN details
Analysed
19-APR-05
BX571669.7
finished
49295 RPCI-71        
  GAP (type-3) length unknown                  
35 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
Analysed
21-JUL-04
BX511020.10
finished
160830 RPCI-71        
  GAP (type-3) length unknown                  
37 CH211-232H22
ctg349
zC232H22
EPN details
Analysed
02-JUN-04
BX276122.23
finished
186714 CHORI-211        
  GAP (type-3) length unknown                  
39 CH211-198G14
ctg386
zC198G14
EPN details
Submitted to EMBL
12-JAN-09
BX248128.20
finished
203829 CHORI-211        
  GAP (type-3) length unknown                  
41 DKEY-195E19
ctg470
zK195E19
EPN details
Submitted to EMBL
05-JUN-07
BX510909.19
finished
190731 DanioKey        
  GAP (type-3) length unknown                  
43 CH211-134C10
ctg6109
zC134C10
EPN details
Analysed
12-JUL-07
CU182823.7
finished
171924 CHORI-211        
  GAP (type-3) length unknown                  
45 DKEY-156C23
ctg6308
zK156C23
EPN details
Analysed
27-FEB-09
CU457778.8
finished
219905 DanioKey        
  GAP (type-3) length unknown                  
47 DKEY-260J10
ctg6325
zK260J10
EPN details
Analysed
02-NOV-07
CU182107.11
finished
178297 DanioKey        
  GAP (type-3) length unknown                  
49 CH211-236G14
ctg6693
zC236G14
EPN details
Analysed
08-FEB-06
CR391997.9
finished
163437 CHORI-211        
  GAP (type-3) length unknown                  
51 CH211-248K15
ctg8005
zC248K15
EPN details
Submitted to EMBL
12-JAN-09
CT025651.9
finished
153879 CHORI-211        

Statistics

Clone Summary

Number of gaps
24
Gap types
type-3
24
Total clones
27
Clone HTGS Phases
finished
27
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
3,883,775
Total finished length of fin clones w/o overlap
3,879,775
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
3,883,775
Total finished length of fin+unfin clones w/o overlap
3,879,775

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Other links

* quick link - http://q.sanger.ac.uk/9pcok3f4