ChromoView - clone / Assembly sequencing status

Zebrafish: Chromosome U (TPF updated: 2016-09-29)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH1073-442M7
ctg10504
zFD442M7
EPN details
CU550713.6
finished
  GAP (type-3) length unknown    
3 DKEY-36K5
ctg1235
zK36K5
EPN details
BX005448.16
finished
  GAP (type-3) length unknown    
5 DKEY-204O6
ctg1424
zK204O6
EPN details
CR788286.12
finished
  GAP (type-3) length unknown    
7 CH211-132N12
ctg1924
zC132N12
EPN details
BX942821.24
finished
  GAP (type-3) length unknown    
9 CH211-243G5
ctg2405
zC243G5
EPN details
CR762420.25
finished
  GAP (type-3) length unknown    
11 CH211-101J4
ctg2478
zC101J4
EPN details
CT583714.7
finished
  GAP (type-3) length unknown    
13 CH211-242E19
ctg2612
zC242E19
EPN details
CR847893.16
finished
  GAP (type-3) length unknown    
15 CH211-13F6
ctg2688
zC13F6
EPN details
AL929028.29
finished
  GAP (type-3) length unknown    
17 DKEYP-90E1
ctg2689
zKp90E1
EPN details
BX664622.10
finished
  GAP (type-3) length unknown    
19 CH211-32A20
ctg2784
zC32A20
EPN details
BX927374.34
finished
20 DKEY-78I4
ctg2784
zK78I4
EPN details
CR927215.14
finished
  GAP (type-3) length unknown    
22 RP71-84E6
ctg2805
bZ84E6
EPN details
BX465848.13
finished
  GAP (type-3) length unknown    
24 DKEY-19D22
ctg2934
zK19D22
EPN details
CR792415.19
finished
  GAP (type-3) length unknown    
26 DKEY-189P19
ctg3234
zK189P19
EPN details
BX640586.12
finished
  GAP (type-3) length unknown    
28 RP71-76M23
ctg3235
bZ76M23
EPN details
BX571669.7
finished
  GAP (type-3) length unknown    
30 RP71-9C18
ctg3250
Cl/Pr bZ9C18/zC125C23 swap
EPN details
BX511020.10
finished
  GAP (type-3) length unknown    
32 CH211-232H22
ctg349
zC232H22
EPN details
BX276122.23
finished
  GAP (type-3) length unknown    
34 CH211-198G14
ctg386
zC198G14
EPN details
BX248128.20
finished
  GAP (type-3) length unknown    
36 DKEY-195E19
ctg470
zK195E19
EPN details
BX510909.19
finished
  GAP (type-3) length unknown    
38 CH211-134C10
ctg6109
zC134C10
EPN details
CU182823.7
finished
  GAP (type-3) length unknown    
40 DKEY-156C23
ctg6308
zK156C23
EPN details
CU457778.8
finished
  GAP (type-3) length unknown    
42 DKEY-260J10
ctg6325
zK260J10
EPN details
CU182107.11
finished
  GAP (type-3) length unknown    
44 CH211-236G14
ctg6693
zC236G14
EPN details
CR391997.9
finished
  GAP (type-3) length unknown    
46 CH211-248K15
ctg8005
zC248K15
EPN details
CT025651.9
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 38724 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU550713.6 1 38724 +
38725 88724 2 N 50000 contig no
88725 226192 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 BX005448.16 1 137468 +
226193 276192 4 N 50000 contig no
276193 429052 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CR788286.12 1 152860 +
429053 479052 6 N 50000 contig no
479053 638109 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX942821.24 1 159057 +
638110 688109 8 N 50000 contig no
688110 852889 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CR762420.25 1 164780 +
852890 902889 10 N 50000 contig no
902890 1050246 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CT583714.7 1 147357 +
1050247 1100246 12 N 50000 contig no
1100247 1265914 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 CR847893.16 1 165668 +
1265915 1315914 14 N 50000 contig no
1315915 1498286 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AL929028.29 1 182372 +
1498287 1548286 16 N 50000 contig no
1548287 1720731 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 BX664622.10 1 172445 +
1720732 1770731 18 N 50000 contig no
1770732 1933924 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 BX927374.34 1 163193 -
1933925 2113749 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 CR927215.14 1 179825 -
2113750 2163749 21 N 50000 contig no
2163750 2343160 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 BX465848.13 1 179411 +
2343161 2393160 23 N 50000 contig no
2393161 2626353 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 CR792415.19 1 233193 +
2626354 2676353 25 N 50000 contig no
2676354 2713264 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 BX640586.12 1 36911 +
2713265 2763264 27 N 50000 contig no
2763265 2812559 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 BX571669.7 1 49295 +
2812560 2862559 29 N 50000 contig no
2862560 3023389 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 BX511020.10 1 160830 +
3023390 3073389 31 N 50000 contig no
3073390 3260103 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 BX276122.23 1 186714 +
3260104 3310103 33 N 50000 contig no
3310104 3513932 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 BX248128.20 1 203829 +
3513933 3563932 35 N 50000 contig no
3563933 3754663 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 36 - 36 BX510909.19 1 190731 +
3754664 3804663 37 N 50000 contig no
3804664 3976587 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 CU182823.7 1 171924 +
3976588 4026587 39 N 50000 contig no
4026588 4246492 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 CU457778.8 1 219905 +
4246493 4296492 41 N 50000 contig no
4296493 4474789 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 42 CU182107.11 1 178297 +
4474790 4524789 43 N 50000 contig no
4524790 4688226 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 44 - 44 CR391997.9 1 163437 +
4688227 4738226 45 N 50000 contig no
4738227 4892105 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 46 - 46 CT025651.9 1 153879 +

Details

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# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-442M7
ctg10504
zFD442M7
-
-
CU550713.6
finished
38724 CHORI1073        
  GAP (type-3) length unknown                  
3 DKEY-36K5
ctg1235
zK36K5
-
-
BX005448.16
finished
137468 DanioKey        
  GAP (type-3) length unknown                  
5 DKEY-204O6
ctg1424
zK204O6
-
-
CR788286.12
finished
152860 DanioKey        
  GAP (type-3) length unknown                  
7 CH211-132N12
ctg1924
zC132N12
-
-
BX942821.24
finished
159057 CHORI-211        
  GAP (type-3) length unknown                  
9 CH211-243G5
ctg2405
zC243G5
-
-
CR762420.25
finished
164780 CHORI-211        
  GAP (type-3) length unknown                  
11 CH211-101J4
ctg2478
zC101J4
-
-
CT583714.7
finished
147357 CHORI-211        
  GAP (type-3) length unknown                  
13 CH211-242E19
ctg2612
zC242E19
-
-
CR847893.16
finished
165668 CHORI-211        
  GAP (type-3) length unknown                  
15 CH211-13F6
ctg2688
zC13F6
-
-
AL929028.29
finished
182372 CHORI-211        
  GAP (type-3) length unknown                  
17 DKEYP-90E1
ctg2689
zKp90E1
-
-
BX664622.10
finished
172445 DanioKeypilot        
  GAP (type-3) length unknown                  
19 CH211-32A20
ctg2784
zC32A20
-
-
BX927374.34
finished
163193 CHORI-211 5' / 3'
1 / 179825
- / -
2000
0
Identified
2016-02-24
fetch_ncbi...
humpub
 
20 DKEY-78I4
ctg2784
zK78I4
-
-
CR927215.14
finished
181825 DanioKey        
  GAP (type-3) length unknown                  
22 RP71-84E6
ctg2805
bZ84E6
-
-
BX465848.13
finished
179411 RPCI-71        
  GAP (type-3) length unknown                  
24 DKEY-19D22
ctg2934
zK19D22
-
-
CR792415.19
finished
233193 DanioKey        
  GAP (type-3) length unknown                  
26 DKEY-189P19
ctg3234
zK189P19
-
-
BX640586.12
finished
36911 DanioKey        
  GAP (type-3) length unknown                  
28 RP71-76M23
ctg3235
bZ76M23
-
-
BX571669.7
finished
49295 RPCI-71        
  GAP (type-3) length unknown                  
30 RP71-9C18
ctg3250
bZ9C18
-
-
BX511020.10
finished
160830 RPCI-71        
  GAP (type-3) length unknown                  
32 CH211-232H22
ctg349
zC232H22
-
-
BX276122.23
finished
186714 CHORI-211        
  GAP (type-3) length unknown                  
34 CH211-198G14
ctg386
zC198G14
-
-
BX248128.20
finished
203829 CHORI-211        
  GAP (type-3) length unknown                  
36 DKEY-195E19
ctg470
zK195E19
-
-
BX510909.19
finished
190731 DanioKey        
  GAP (type-3) length unknown                  
38 CH211-134C10
ctg6109
zC134C10
-
-
CU182823.7
finished
171924 CHORI-211        
  GAP (type-3) length unknown                  
40 DKEY-156C23
ctg6308
zK156C23
-
-
CU457778.8
finished
219905 DanioKey        
  GAP (type-3) length unknown                  
42 DKEY-260J10
ctg6325
zK260J10
-
-
CU182107.11
finished
178297 DanioKey        
  GAP (type-3) length unknown                  
44 CH211-236G14
ctg6693
zC236G14
-
-
CR391997.9
finished
163437 CHORI-211        
  GAP (type-3) length unknown                  
46 CH211-248K15
ctg8005
zC248K15
-
-
CT025651.9
finished
153879 CHORI-211        

Statistics

Help

Clone Summary

Number of gaps
22
Gap types
type-3
22
Total clones
24
Clone HTGS Phases
finished
24
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
3,794,105
Total finished length of fin clones w/o overlap
3,792,105
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
3,794,105
Total finished length of fin+unfin clones w/o overlap
3,792,105

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