ChromoView - clone / Assembly sequencing status

Chicken: Chromosome U (TPF updated: 2004-11-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 WAG-18M1
Chicken_Uctg4
bWL18M1
EPN details
BX663531.3
finished
2
Chicken_Uctg4
AP003795
AP003795.2
finished
3
Chicken_Uctg4
AP003796
AP003796.2
finished
4 WAG-36O23
Chicken_Uctg4
bWL36O23
EPN details
BX640404.2
finished
5 WAG-90O5
Chicken_Uctg4
bWL90O5
EPN details
BX649222.6
finished
6 WAG-43K7
Chicken_Uctg4
bWL43K7
EPN details
BX649221.3
finished
7 WAG-89C18
Chicken_Uctg4
bWL89C18
EPN details
CR855369.3
finished
8 WAG-45A21
?
bWL45A21
EPN details
CR855371.13
finished
9 WAG-36E6
Chicken_Uctg4
bWL36E6
EPN details
CR855866.2
finished
10 WAG-106I4
Chicken_Uctg4
bWL106I4
EPN details
BX640401.2
finished
11 WAG-124D2
Chicken_Uctg4
bWL124D2
EPN details
BX640540.3
finished

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 WAG-18M1
Chicken_Uctg4
bWL18M1
EPN details
Analysed
30-OCT-03
BX663531.3
finished
111106 WUABG-WL 3' / 3'
111106 / 185259
- / -
2000
0
Identified
2003-10-28
find_overl...
gjc
 
2
Chicken_Uctg4
AP003795
-
-
AP003795.2
finished
187259 - 5' / 3'
34250 / 156014
- / -
34265
0.59
Identified
2003-08-27
find_overl...
badger
 
3
Chicken_Uctg4
AP003796
-
-
AP003796.2
finished
156014 - 5' / 5'
90649 / 1
- / -
90774
1.12
Identified
2003-09-12
find_overl...
badger
 
4 WAG-36O23
Chicken_Uctg4
bWL36O23
EPN details
Analysed
02-SEP-03
BX640404.2
finished
136520 WUABG-WL 3' / 5'
136520 / 2001
- / -
2000
0
Identified
2013-08-07
find_overl...
humpub
 
5 WAG-90O5
Chicken_Uctg4
bWL90O5
EPN details
Analysed
30-OCT-03
BX649222.6
finished
121741 WUABG-WL 3' / 5'
119742 / 1
- / -
2000
0.85
Identified
2003-10-28
find_overl...
gjc
 
6 WAG-43K7
Chicken_Uctg4
bWL43K7
EPN details
Analysed
30-SEP-03
BX649221.3
finished
101661 WUABG-WL 3' / 5'
101661 / 2001
- / -
2000
0.45
Identified
2004-11-19
find_overl...
badger
 
7 WAG-89C18
Chicken_Uctg4
bWL89C18
EPN details
Analysed
12-NOV-04
CR855369.3
finished
112938 WUABG-WL 3' / 5'
112938 / 974
- / -
973
0
Identified
2005-02-04
find_overl...
badger
 
8 WAG-45A21
?
bWL45A21
EPN details
Analysed
04-FEB-05
CR855371.13
finished
104062 WUABG-WL 3' / 5'
104062 / 2001
- / -
2000
0
Identified
2005-02-04
find_overl...
badger
 
9 WAG-36E6
Chicken_Uctg4
bWL36E6
EPN details
Analysed
10-NOV-04
CR855866.2
finished
3994 WUABG-WL 3' / 5'
3994 / 2001
- / -
2000
0
Identified
2004-11-12
find_overl...
jgrg
 
10 WAG-106I4
Chicken_Uctg4
bWL106I4
EPN details
Analysed
24-SEP-03
BX640401.2
finished
104753 WUABG-WL 3' / 5'
104753 / 2001
- / -
2000
0
Identified
2003-10-31
find_overl...
badger
 
11 WAG-124D2
Chicken_Uctg4
bWL124D2
EPN details
Analysed
30-OCT-03
BX640540.3
finished
161956 WUABG-WL        

Statistics

Clone Summary

Number of gaps
0
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
140,012
Total finished length of fin clones w/ overlap
1,302,004
Total finished length of fin clones w/o overlap
1,161,992
Total overlap length of fin+unfin clones
140,012
Total finished length of fin+unfin clones w/ overlap
1,302,004
Total finished length of fin+unfin clones w/o overlap
1,161,992

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Other links

* quick link - http://q.sanger.ac.uk/bk061ko7