ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_SSTO (TPF updated: 2008-09-10)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DASS-179P20
Hschr6_MHC_SSTO_ctg1
bSS179P20
BX088523.6
finished
2 DASS-263B11
Hschr6_MHC_SSTO_ctg1
bSS263B11
BX470194.8
finished
3 DASS-46L4
Hschr6_MHC_SSTO_ctg1
bSS46L4
BX119924.8
finished
4 DASS-125F11
Hschr6_MHC_SSTO_ctg1
bSS125F11
BX005144.14
finished
5 DASS-381E5
Hschr6_MHC_SSTO_ctg1
bSS381E5
BX248109.8
finished
6 DASS-159D11
Hschr6_MHC_SSTO_ctg1
bSS159D11
BX293545.10
finished
7 DASS-263D3
Hschr6_MHC_SSTO_ctg1
bSS263D3
BX248413.5
finished
8 DASS-357K17
Hschr6_MHC_SSTO_ctg1
bSS357K17
BX248093.4
finished
9 DASS-5D2
Hschr6_MHC_SSTO_ctg1
bSS5D2
BX248084.5
finished
10 DASS-352F1
Hschr6_MHC_SSTO_ctg1
bSS352F1
BX005432.7
finished
11 DASS-103C7
Hschr6_MHC_SSTO_ctg1
bSS103C7
BX005133.4
finished
12 DASS-235A23
Hschr6_MHC_SSTO_ctg1
bSS235A23
BX248400.3
finished
13 DASS-372E1
Hschr6_MHC_SSTO_ctg1
bSS372E1
BX247947.4
finished
  GAP (type-2) length 79442 bps    
15 DASS-219N15
Hschr6_MHC_SSTO_ctg1
bSS219N15
BX120002.12
finished
16 DASS-38I7
Hschr6_MHC_SSTO_ctg1
bSS38I7
BX005428.7
finished
17 DASS-366B6
Hschr6_MHC_SSTO_ctg1
bSS366B6
BX247949.9
finished
18 DASS-385P13
Hschr6_MHC_SSTO_ctg1
bSS385P13
BX284699.4
finished
19 DASS-101N5
Hschr6_MHC_SSTO_ctg1
bSS101N5
BX005091.7
finished
20 DASS-211F20
Hschr6_MHC_SSTO_ctg1
bSS211F20
BX120004.8
finished
21 DASS-90B3
Hschr6_MHC_SSTO_ctg1
bSS90B3
BX088647.3
finished
22 BSS90B3_59H21
Hschr6_MHC_SSTO_ctg1
BSS90B3_59H21
BX897730.1
finished
23 DASS-59H21
Hschr6_MHC_SSTO_ctg1
bSS59H21
BX005441.10
finished
24 DASS-254G14
Hschr6_MHC_SSTO_ctg1
bSS254G14
BX248419.4
finished
25 DASS-179M10
Hschr6_MHC_SSTO_ctg1
bSS179M10
BX248580.4
finished
26 DASS-161J15
Hschr6_MHC_SSTO_ctg1
bSS161J15
BX294158.7
finished
  GAP (type-2) length 16691 bps    
28 DASS-94P17A
Hschr6_MHC_SSTO_ctg1
bSS94P17A
CR751549.1
finished
29 DASS-377E3
Hschr6_MHC_SSTO_ctg1
bSS377E3
BX936375.4
finished
30 DASS-205I8
Hschr6_MHC_SSTO_ctg1
bSS205I8
BX936369.5
finished
31 DASS-205E5
Hschr6_MHC_SSTO_ctg1
bSS205E5
BX248096.10
finished
32 DASS-94P17B
Hschr6_MHC_SSTO_ctg1
bSS94P17B
CR751550.1
finished
  GAP (type-2) length 2260 bps    
34 DASS-249B18
Hschr6_MHC_SSTO_ctg1
bSS249B18
BX248518.5
finished
35 DASS-182C6
Hschr6_MHC_SSTO_ctg1
bSS182C6
BX119957.13
finished
  GAP (type-2) length 14263 bps    
37 DASS-191K16
Hschr6_MHC_SSTO_ctg1
bSS191K16
BX248307.7
finished
  GAP (type-2) length 34680 bps    
39 DASS-236I5
Hschr6_MHC_SSTO_ctg1
bSS236I5
BX914213.4
finished
  GAP (type-2) length 12401 bps    
41 DASS-335H18
Hschr6_MHC_SSTO_ctg1
bSS335H18
BX571801.6
finished
  GAP (type-2) length 164527 bps    
43 DASS-278P8
Hschr6_MHC_SSTO_ctg1
bSS278P8
BX936457.5
finished
44 DASS-298E13
Hschr6_MHC_SSTO_ctg1
bSS298E13
BX942838.5
finished
45 DASS-206K16
Hschr6_MHC_SSTO_ctg1
bSS206K16
BX248321.5
finished
46 DASS-357P10
Hschr6_MHC_SSTO_ctg1
bSS357P10
BX247900.8
finished
  GAP (type-2) length 49946 bps    
48 DASS-209N9
Hschr6_MHC_SSTO_ctg1
bSS209N9
BX088580.11
finished
49 DASS-343G16
Hschr6_MHC_SSTO_ctg1
bSS343G16
BX470206.6
finished
50 DASS-311G1
Hschr6_MHC_SSTO_ctg1
bSS311G1
BX248310.3
finished
51 DASS-38L18
Hschr6_MHC_SSTO_ctg1
bSS38L18
BX119958.10
finished
52 DASS-81K16
Hschr6_MHC_SSTO_ctg1
bSS81K16
BX005439.8
finished
53 DASS-370L18
Hschr6_MHC_SSTO_ctg1
bSS370L18
BX682535.3
finished
54 DASS-161H22
Hschr6_MHC_SSTO_ctg1
bSS161H22
BX248516.6
finished
55 DASS-280D8
Hschr6_MHC_SSTO_ctg1
bSS280D8
BX248519.7
finished
56 DASS-82G15
Hschr6_MHC_SSTO_ctg1
bSS82G15
BX248305.13
finished
57 DASS-336N12
Hschr6_MHC_SSTO_ctg1
bSS336N12
BX511262.7
finished
58 DASS-312M4
Hschr6_MHC_SSTO_ctg1
bSS312M4
BX248244.7
finished
  GAP (type-2) length 14782 bps    
60 DASS-324O23
Hschr6_MHC_SSTO_ctg1
bSS324O23
BX248133.10
finished
  GAP (type-2) length 61131 bps    
62 DASS-36P22
Hschr6_MHC_SSTO_ctg1
bSS36P22
BX005460.8
finished
  GAP (type-2) length 23170 bps    
64 DASS-107J21
Hschr6_MHC_SSTO_ctg1
bSS107J21
BX005143.8
finished
65 DASS-264H16
Hschr6_MHC_SSTO_ctg1
bSS264H16
CR753822.3
finished
66 DASS-307J8
Hschr6_MHC_SSTO_ctg1
bSS307J8
BX679671.7
finished
  GAP (type-2) length 77056 bps    
68 DASS-39F23
Hschr6_MHC_SSTO_ctg1
bSS39F23
BX284686.9
finished
69 DASS-105C4
Hschr6_MHC_SSTO_ctg1
bSS105C4
BX284927.5
finished
70 DASS-392K21
Hschr6_MHC_SSTO_ctg1
bSS392K21
BX119999.11
finished
71 DASS-380D18
Hschr6_MHC_SSTO_ctg1
bSS380D18
BX255945.6
finished
72 DASS-397D15
Hschr6_MHC_SSTO_ctg1
bSS397D15
BX120007.9
finished
73 DASS-218M11
Hschr6_MHC_SSTO_ctg1
bSS218M11
BX571807.5
finished
74 DASS-23B5
Hschr6_MHC_SSTO_ctg1
bSS23B5
BX649210.7
finished
75 DASS-233C19
Hschr6_MHC_SSTO_ctg1
bSS233C19
BX296568.4
finished
76 DASS-390M22
Hschr6_MHC_SSTO_ctg1
bSS390M22
BX248406.4
finished
77 BSS390M22_256O6
Hschr6_MHC_SSTO_ctg1
BSS390M22_256O6
BX927131.1
finished
78 DASS-256O6
Hschr6_MHC_SSTO_ctg1
bSS256O6
BX296564.7
finished
79 DASS-193J13
Hschr6_MHC_SSTO_ctg1
bSS193J13
BX682530.4
finished
80 DASS-67H14
Hschr6_MHC_SSTO_ctg1
bSS67H14
BX088556.11
finished
81 DASS-219C23
Hschr6_MHC_SSTO_ctg1
bSS219C23
BX664702.5
finished
82 DASS-32K24
Hschr6_MHC_SSTO_ctg1
bSS32K24
BX005422.5
finished
83 DASS-227B13
Hschr6_MHC_SSTO_ctg1
bSS227B13
BX120009.10
finished
  GAP (type-2) length 29808 bps    
85 DASS-241N2
Hschr6_MHC_SSTO_ctg1
bSS241N2
BX248309.8
finished
  GAP (type-2) length 21750 bps    
87 DASS-63A3
Hschr6_MHC_SSTO_ctg1
bSS63A3
BX248408.4
finished
  GAP (type-2) length 50858 bps    
89 DASS-254C22
Hschr6_MHC_SSTO_ctg1
bSS254C22
BX571808.6
finished
  GAP (type-2) length 52251 bps    
91 DASS-97D12
Hschr6_MHC_SSTO_ctg1
bSS97D12
BX088650.9
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 87597 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX088523.6 1 87597 +
87598 129430 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX470194.8 2001 43833 +
129431 219488 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX119924.8 2001 92058 +
219489 236574 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX005144.14 2001 19086 +
236575 287185 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX248109.8 2001 52611 +
287186 309478 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX293545.10 2000 24292 +
309479 383320 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX248413.5 2001 75842 +
383321 492953 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX248093.4 2001 111633 +
492954 557021 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX248084.5 2001 66068 +
557022 611665 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX005432.7 2001 56644 +
611666 705874 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX005133.4 2001 96209 +
705875 739157 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX248400.3 2001 35283 +
739158 849218 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 13 BX247947.4 2001 112061 +
849219 928660 14 N 79442 contig yes
928661 979902 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX120002.12 1 51242 +
979903 1108836 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX005428.7 2001 130934 +
1108837 1163406 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX247949.9 2001 56570 +
1163407 1200514 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX284699.4 2001 39108 +
1200515 1291179 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX005091.7 2001 92665 +
1291180 1294015 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX120004.8 2001 4836 +
1294016 1392198 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX088647.3 2001 100183 +
1392199 1395427 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX897730.1 101 3329 +
1395428 1452591 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX005441.10 101 57264 +
1452592 1572912 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX248419.4 2001 122321 +
1572913 1628082 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX248580.4 2001 57170 +
1628083 1715135 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 26 BX294158.7 2001 89053 +
1715136 1731826 27 N 16691 contig yes
1731827 1738480 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 CR751549.1 1 6654 +
1738481 1771728 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 BX936375.4 2001 35248 +
1771729 1794483 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 BX936369.5 2001 24755 +
1794484 1815964 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 BX248096.10 2001 23481 +
1815965 1824050 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 32 CR751550.1 2001 10086 +
1824051 1826310 33 N 2260 contig yes
1826311 1860861 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 BX248518.5 1 34551 +
1860862 1970979 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 BX119957.13 2001 112118 +
1970980 1985242 36 N 14263 contig yes
1985243 2040153 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 BX248307.7 1 54911 +
2040154 2074833 38 N 34680 contig yes
2074834 2088892 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 BX914213.4 1 14059 +
2088893 2101293 40 N 12401 contig yes
2101294 2125909 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 BX571801.6 1 24616 +
2125910 2290436 42 N 164527 contig yes
2290437 2293572 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 BX936457.5 1 3136 +
2293573 2297927 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 BX942838.5 2001 6355 +
2297928 2325044 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 BX248321.5 2001 29117 +
2325045 2398665 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 BX247900.8 2001 75621 +
2398666 2448611 47 N 49946 contig yes
2448612 2497065 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX088580.11 1 48454 +
2497066 2553911 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX470206.6 2001 58846 +
2553912 2668231 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX248310.3 2001 116320 +
2668232 2704823 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX119958.10 2001 38592 +
2704824 2812824 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX005439.8 2001 110001 +
2812825 2815164 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX682535.3 2001 4340 +
2815165 2855602 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX248516.6 2001 42438 +
2855603 2893762 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX248519.7 2001 40160 +
2893763 2908447 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX248305.13 2001 16685 +
2908448 2975456 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX511262.7 2001 69009 +
2975457 3027602 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 58 BX248244.7 2001 54146 +
3027603 3042384 59 N 14782 contig yes
3042385 3080986 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 60 - 60 BX248133.10 1 38602 +
3080987 3142117 61 N 61131 contig yes
3142118 3178614 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 BX005460.8 1 36497 +
3178615 3201784 63 N 23170 contig yes
3201785 3253626 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 BX005143.8 1 51842 +
3253627 3262014 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 CR753822.3 2001 10388 +
3262015 3356349 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 66 BX679671.7 2001 96335 +
3356350 3433405 67 N 77056 contig yes
3433406 3513468 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX284686.9 1 80063 +
3513469 3620228 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX284927.5 2001 108760 +
3620229 3645994 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX119999.11 272 26037 +
3645995 3740054 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX255945.6 2001 96060 +
3740055 3847736 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX120007.9 2001 109682 +
3847737 3914421 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX571807.5 2001 68685 +
3914422 3923554 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX649210.7 2001 11133 +
3923555 4009291 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX296568.4 2002 87738 +
4009292 4132078 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX248406.4 2001 124787 +
4132079 4134499 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX927131.1 101 2521 +
4134500 4209245 78 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX296564.7 101 74846 +
4209246 4227181 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX682530.4 2001 19936 +
4227182 4339757 80 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 80 BX088556.11 2001 114576 +
4339758 4359982 81 F BX664702.5
Double 5-prime join to 'BX664702.5'
1 20225 -
4359983 4364982 82 N 5000 Bad overlap - double 5 prime join    
4364983 4442025 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 84 BX005422.5 20424 97466 +
4442026 4504405 84 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 84 BX120009.10 2001 64380 +
4504406 4534213 85 N 29808 contig yes
4534214 4563801 86 FClick to retrieve finished assembled sequence in green bar: rank(s) 86 - 86 BX248309.8 1 29588 +
4563802 4585551 87 N 21750 contig yes
4585552 4647504 88 FClick to retrieve finished assembled sequence in green bar: rank(s) 88 - 88 BX248408.4 1 61953 +
4647505 4698362 89 N 50858 contig yes
4698363 4707793 90 FClick to retrieve finished assembled sequence in green bar: rank(s) 90 - 90 BX571808.6 1 9431 +
4707794 4760044 91 N 52251 contig yes
4760045 4852562 92 FClick to retrieve finished assembled sequence in green bar: rank(s) 92 - 92 BX088650.9 1 92518 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
16
Gap types
type-2
16
Total clones
75
Clone HTGS Phases
finished
75
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
104,796
Total finished length of fin clones w/ overlap
4,265,640
Total finished length of fin clones w/o overlap
4,160,844
Total overlap length of fin+unfin clones
104,796
Total finished length of fin+unfin clones w/ overlap
4,265,640
Total finished length of fin+unfin clones w/o overlap
4,160,844

AGP errors

# rank accession seq_start seq_end strand error date
1 82 BX664702.5 1 20,225 -1 Double 5-prime join to 'BX664702.5' Fri, 28 Aug 2015 23:49

Dovetails

# rank accession status length date
1 75 BX296568.4 unfinished 1 Fri, 28 Aug 2015 23:49
2 82 BX005422.5 unfinished 20,297 Fri, 28 Aug 2015 23:49

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Other links

* quick link - http://q.sanger.ac.uk/4mya5t6b