ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_3__11 (TPF updated: 2017-09-19)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 DKEY-27D5
alt_ctg11_3_1
zK27D5
BX000700.38
finished
2 CH211-278L13
alt_ctg11_3_1
zC278L13
BX470258.4
finished
3 CH211-209F22
alt_ctg11_3_1
zC209F22
CR450764.3
finished
  GAP (type-3) length unknown    
5 CH73-20D8
alt_ctg11_3_2
zH20D8
CU074418.11
finished
6 CH211-196D14
alt_ctg11_3_2
zC196D14
AL772274.8
finished
7 CH211-205H10
alt_ctg11_3_2
zC205H10
BX640470.7
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 149399 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX000700.38 1 149399 +
149400 329380 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 BX470258.4 1 179981 +
329381 477473 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CR450764.3 4723 152815 +
477474 527473 4 N 50000 contig no
527474 635669 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU074418.11 14076 122271 -
635670 816801 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 AL772274.8 1 181132 +
816802 899883 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 BX640470.7 1 83082 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
154,678
Total finished length of fin clones w/ overlap
1,004,561
Total finished length of fin clones w/o overlap
849,883
Total overlap length of fin+unfin clones
154,678
Total finished length of fin+unfin clones w/ overlap
1,004,561
Total finished length of fin+unfin clones w/o overlap
849,883

Search

Search Project, Accession or International clone name:

Select region

Other links

Short-link