ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region GRC__ZEBRAFISH__ALT_DRER_TU_2__20 (TPF updated: 2017-11-20)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DKEY-63J12
alt_ctg20_2_1
zK63J12
AL954679.7
finished
2 CH211-260D9
alt_ctg20_2_1
zC260D9
BX255947.6
finished
  GAP (type-3) length unknown    
4 CH211-215M21
alt_ctg20_2_2
zC215M21
AL928995.20
finished
5 DKEYP-70E6
alt_ctg20_2_2
zKp70E6
BX324115.8
finished
6 DKEYP-95D10
alt_ctg20_2_2
zKp95D10
BX784041.24
finished
  GAP (type-3) length unknown    
8 DKEY-7C18
alt_ctg20_2_3
zK7C18
AL929507.37
finished
9 CH211-150A17
alt_ctg20_2_3
zC150A17
CT476803.10
finished
10 DKEY-246E3
alt_ctg20_2_3
zK246E3
CR391946.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 116290 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL954679.7 15929 132218 -
116291 264180 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 BX255947.6 2 147891 +
264181 314180 3 N 50000 contig no
314181 358478 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 AL928995.20 1 44298 +
358479 561025 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 BX324115.8 1 202547 -
561026 592005 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 6 BX784041.24 3281 34260 +
592006 642005 7 N 50000 contig no
642006 803479 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 AL929507.37 52931 214404 -
803480 893211 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 CT476803.10 1 89732 +
893212 894478 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 10 CR391946.4 1 1267 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-3
2
Total clones
8
Clone HTGS Phases
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
173,194
Total finished length of fin clones w/ overlap
967,672
Total finished length of fin clones w/o overlap
794,478
Total overlap length of fin+unfin clones
173,194
Total finished length of fin+unfin clones w/ overlap
967,672
Total finished length of fin+unfin clones w/o overlap
794,478

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